data_OM3
# 
_chem_comp.id                                    OM3 
_chem_comp.name                                  "(R)-(4-CARBOXY-1,3-BENZODIOXOL-5-YL)METHYL-[[2-(CYCLOHEXYLMETHYLCARBAMOYL)PHENYL]METHYL]-METHYL-AZANIUM" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H31 N2 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    1 
_chem_comp.pdbx_initial_date                     2011-07-01 
_chem_comp.pdbx_modified_date                    2023-09-23 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        439.524 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     OM3 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3ZSY 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
OM3 C1   C1   C 0 1 Y N N -36.180 33.376 -18.536 2.355  -4.330 -1.517 C1   OM3 1  
OM3 C2   C2   C 0 1 Y N N -36.518 34.533 -17.885 1.301  -5.113 -1.080 C2   OM3 2  
OM3 C3   C3   C 0 1 Y N N -36.084 32.208 -17.804 2.489  -3.034 -1.065 C3   OM3 3  
OM3 C4   C4   C 0 1 Y N N -36.754 34.496 -16.525 0.375  -4.602 -0.188 C4   OM3 4  
OM3 C5   C5   C 0 1 Y N N -33.622 32.780 -11.118 -4.616 -0.745 0.469  C5   OM3 5  
OM3 C6   C6   C 0 1 Y N N -32.683 33.151 -10.168 -5.478 0.104  -0.204 C6   OM3 6  
OM3 C7   C7   C 0 1 Y N N -36.315 32.163 -16.444 1.559  -2.512 -0.165 C7   OM3 7  
OM3 C8   C8   C 0 1 Y N N -32.757 34.386 -12.712 -2.879 0.911  0.343  C8   OM3 8  
OM3 C9   C9   C 0 1 Y N N -36.662 33.333 -15.795 0.498  -3.307 0.272  C9   OM3 9  
OM3 C10  C10  C 0 1 Y N N -33.665 33.379 -12.369 -3.325 -0.352 0.744  C10  OM3 10 
OM3 C11  C11  C 0 1 Y N N -31.805 34.147 -10.518 -5.053 1.358  -0.608 C11  OM3 11 
OM3 C12  C12  C 0 1 Y N N -31.841 34.739 -11.742 -3.750 1.770  -0.337 C12  OM3 12 
OM3 C13  C13  C 0 1 N N N -36.190 30.865 -15.715 1.697  -1.124 0.324  C13  OM3 13 
OM3 C14  C14  C 0 1 N N N -32.723 35.059 -14.051 -1.498 1.337  0.637  C14  OM3 14 
OM3 C15  C15  C 0 1 N N N -31.645 28.869 -12.706 6.663  3.048  0.020  C15  OM3 15 
OM3 C16  C16  C 0 1 N N N -31.656 27.750 -13.720 5.407  3.775  -0.467 C16  OM3 16 
OM3 C17  C17  C 0 1 N N N -33.050 28.942 -12.159 6.589  1.575  -0.388 C17  OM3 17 
OM3 C18  C18  C 0 1 N N N -32.604 28.085 -14.858 4.170  3.132  0.163  C18  OM3 18 
OM3 C19  C19  C 0 1 N N N -33.957 29.444 -13.262 5.352  0.932  0.242  C19  OM3 19 
OM3 C20  C20  C 0 1 N N N -30.249 35.631 -10.573 -4.905 3.542  -1.046 C20  OM3 20 
OM3 C21  C21  C 0 1 N N N -33.995 28.433 -14.379 4.096  1.659  -0.244 C21  OM3 21 
OM3 C22  C22  C 0 1 N N N -36.453 34.338 -12.200 -2.254 -2.760 -0.407 C22  OM3 22 
OM3 C23  C23  C 0 1 N N N -36.944 33.391 -14.330 -0.512 -2.752 1.243  C23  OM3 23 
OM3 C24  C24  C 0 1 N N N -34.727 32.886 -13.308 -2.394 -1.283 1.478  C24  OM3 24 
OM3 C25  C25  C 0 1 N N N -34.949 28.795 -15.508 2.859  1.017  0.386  C25  OM3 25 
OM3 N26  N26  N 0 1 N N N -35.003 30.197 -15.846 2.722  -0.359 -0.099 N26  OM3 26 
OM3 N27  N27  N 1 1 N N N -35.835 33.896 -13.479 -1.482 -1.919 0.518  N27  OM3 27 
OM3 O28  O28  O 0 1 N N N -31.610 35.511 -14.460 -1.198 1.872  1.837  O28  OM3 28 
OM3 O29  O29  O 0 1 N N N -37.077 30.436 -14.998 0.885  -0.672 1.108  O29  OM3 29 
OM3 O30  O30  O 0 1 N N N -33.768 35.102 -14.738 -0.631 1.206  -0.204 O30  OM3 30 
OM3 O31  O31  O 0 1 N N N -30.830 34.649 -9.713  -5.697 2.361  -1.273 O31  OM3 31 
OM3 O32  O32  O 0 1 N N N -30.881 35.705 -11.856 -3.578 3.028  -0.831 O32  OM3 32 
OM3 H1   H1   H 0 1 N N N -35.992 33.377 -19.600 3.077  -4.736 -2.210 H1   OM3 33 
OM3 H2   H2   H 0 1 N N N -36.599 35.463 -18.429 1.201  -6.127 -1.437 H2   OM3 34 
OM3 H3   H3   H 0 1 N N N -35.818 31.295 -18.316 3.313  -2.424 -1.407 H3   OM3 35 
OM3 H4   H4   H 0 1 N N N -37.020 35.411 -16.017 -0.445 -5.218 0.148  H4   OM3 36 
OM3 H5   H5   H 0 1 N N N -34.337 32.007 -10.879 -4.959 -1.720 0.784  H5   OM3 37 
OM3 H6   H6   H 0 1 N N N -32.644 32.679 -9.198  -6.489 -0.214 -0.416 H6   OM3 38 
OM3 H231 H231 H 0 0 N N N -37.812 34.049 -14.179 -1.033 -3.573 1.734  H231 OM3 39 
OM3 H232 H232 H 0 0 N N N -37.192 32.374 -13.993 -0.001 -2.146 1.992  H232 OM3 40 
OM3 H241 H241 H 0 0 N N N -34.271 32.688 -14.289 -1.815 -0.716 2.208  H241 OM3 41 
OM3 H242 H242 H 0 0 N N N -35.153 31.955 -12.907 -2.975 -2.049 1.990  H242 OM3 42 
OM3 H26  H26  H 0 1 N N N -34.186 30.673 -16.171 3.370  -0.719 -0.724 H26  OM3 43 
OM3 H28  H28  H 0 1 N N N -31.714 35.867 -15.335 -0.280 2.135  1.982  H28  OM3 44 
OM3 H151 H151 H 0 0 N N N -30.931 28.648 -11.899 7.544  3.505  -0.429 H151 OM3 45 
OM3 H152 H152 H 0 0 N N N -31.371 29.819 -13.187 6.728  3.122  1.105  H152 OM3 46 
OM3 H161 H161 H 0 0 N N N -30.641 27.613 -14.121 5.460  4.824  -0.176 H161 OM3 47 
OM3 H162 H162 H 0 0 N N N -31.987 26.821 -13.233 5.342  3.701  -1.552 H162 OM3 48 
OM3 H171 H171 H 0 0 N N N -33.376 27.943 -11.833 6.524  1.501  -1.473 H171 OM3 49 
OM3 H172 H172 H 0 0 N N N -33.082 29.635 -11.305 7.484  1.057  -0.041 H172 OM3 50 
OM3 H181 H181 H 0 0 N N N -32.198 28.944 -15.412 4.235  3.206  1.249  H181 OM3 51 
OM3 H182 H182 H 0 0 N N N -32.670 27.215 -15.528 3.276  3.650  -0.183 H182 OM3 52 
OM3 H191 H191 H 0 0 N N N -34.972 29.590 -12.864 5.299  -0.117 -0.048 H191 OM3 53 
OM3 H192 H192 H 0 0 N N N -33.573 30.401 -13.646 5.417  1.006  1.328  H192 OM3 54 
OM3 H21  H21  H 0 1 N N N -34.397 27.511 -13.935 4.031  1.586  -1.330 H21  OM3 55 
OM3 H201 H201 H 0 0 N N N -30.331 36.614 -10.086 -4.927 4.192  -1.921 H201 OM3 56 
OM3 H202 H202 H 0 0 N N N -29.188 35.382 -10.720 -5.257 4.075  -0.163 H202 OM3 57 
OM3 H251 H251 H 0 0 N N N -34.638 28.241 -16.406 2.965  1.011  1.471  H251 OM3 58 
OM3 H252 H252 H 0 0 N N N -35.960 28.478 -15.213 1.973  1.589  0.111  H252 OM3 59 
OM3 H221 H221 H 0 0 N N N -35.672 34.723 -11.529 -2.975 -2.143 -0.943 H221 OM3 60 
OM3 H222 H222 H 0 0 N N N -37.187 35.132 -12.403 -1.577 -3.230 -1.120 H222 OM3 61 
OM3 H223 H223 H 0 0 N N N -36.958 33.485 -11.723 -2.781 -3.530 0.156  H223 OM3 62 
OM3 H227 H227 H 0 0 N N N -35.445 34.701 -13.927 -0.992 -1.208 -0.003 H227 OM3 63 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
OM3 C1  C2   SING Y N 1  
OM3 C1  C3   DOUB Y N 2  
OM3 C2  C4   DOUB Y N 3  
OM3 C3  C7   SING Y N 4  
OM3 C4  C9   SING Y N 5  
OM3 C5  C6   SING Y N 6  
OM3 C5  C10  DOUB Y N 7  
OM3 C6  C11  DOUB Y N 8  
OM3 C7  C9   DOUB Y N 9  
OM3 C7  C13  SING N N 10 
OM3 C8  C10  SING Y N 11 
OM3 C8  C12  DOUB Y N 12 
OM3 C8  C14  SING N N 13 
OM3 C9  C23  SING N N 14 
OM3 C10 C24  SING N N 15 
OM3 C11 C12  SING Y N 16 
OM3 C11 O31  SING N N 17 
OM3 C12 O32  SING N N 18 
OM3 C13 N26  SING N N 19 
OM3 C13 O29  DOUB N N 20 
OM3 C14 O28  SING N N 21 
OM3 C14 O30  DOUB N N 22 
OM3 C15 C16  SING N N 23 
OM3 C15 C17  SING N N 24 
OM3 C16 C18  SING N N 25 
OM3 C17 C19  SING N N 26 
OM3 C18 C21  SING N N 27 
OM3 C19 C21  SING N N 28 
OM3 C20 O31  SING N N 29 
OM3 C20 O32  SING N N 30 
OM3 C21 C25  SING N N 31 
OM3 C22 N27  SING N N 32 
OM3 C23 N27  SING N N 33 
OM3 C24 N27  SING N N 34 
OM3 C25 N26  SING N N 35 
OM3 C1  H1   SING N N 36 
OM3 C2  H2   SING N N 37 
OM3 C3  H3   SING N N 38 
OM3 C4  H4   SING N N 39 
OM3 C5  H5   SING N N 40 
OM3 C6  H6   SING N N 41 
OM3 C23 H231 SING N N 42 
OM3 C23 H232 SING N N 43 
OM3 C24 H241 SING N N 44 
OM3 C24 H242 SING N N 45 
OM3 N26 H26  SING N N 46 
OM3 O28 H28  SING N N 47 
OM3 C15 H151 SING N N 48 
OM3 C15 H152 SING N N 49 
OM3 C16 H161 SING N N 50 
OM3 C16 H162 SING N N 51 
OM3 C17 H171 SING N N 52 
OM3 C17 H172 SING N N 53 
OM3 C18 H181 SING N N 54 
OM3 C18 H182 SING N N 55 
OM3 C19 H191 SING N N 56 
OM3 C19 H192 SING N N 57 
OM3 C21 H21  SING N N 58 
OM3 C20 H201 SING N N 59 
OM3 C20 H202 SING N N 60 
OM3 C25 H251 SING N N 61 
OM3 C25 H252 SING N N 62 
OM3 C22 H221 SING N N 63 
OM3 C22 H222 SING N N 64 
OM3 C22 H223 SING N N 65 
OM3 N27 H227 SING N N 66 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
OM3 InChI            InChI                1.06  "InChI=1S/C25H30N2O5/c1-27(15-19-11-12-21-23(32-16-31-21)22(19)25(29)30)14-18-9-5-6-10-20(18)24(28)26-13-17-7-3-2-4-8-17/h5-6,9-12,17H,2-4,7-8,13-16H2,1H3,(H,26,28)(H,29,30)/p+1" 
OM3 InChIKey         InChI                1.06  STKSSLWZOAVRQS-UHFFFAOYSA-O                                                                                                                                                        
OM3 SMILES_CANONICAL CACTVS               3.385 "C[NH+](Cc1ccccc1C(=O)NCC2CCCCC2)Cc3ccc4OCOc4c3C(O)=O"                                                                                                                             
OM3 SMILES           CACTVS               3.385 "C[NH+](Cc1ccccc1C(=O)NCC2CCCCC2)Cc3ccc4OCOc4c3C(O)=O"                                                                                                                             
OM3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[NH+](Cc1ccccc1C(=O)NCC2CCCCC2)Cc3ccc4c(c3C(=O)O)OCO4"                                                                                                                           
OM3 SMILES           "OpenEye OEToolkits" 2.0.7 "C[NH+](Cc1ccccc1C(=O)NCC2CCCCC2)Cc3ccc4c(c3C(=O)O)OCO4"                                                                                                                           
# 
_pdbx_chem_comp_identifier.comp_id           OM3 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(4-carboxy-1,3-benzodioxol-5-yl)methyl-[[2-(cyclohexylmethylcarbamoyl)phenyl]methyl]-methyl-azanium" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
OM3 "Create component"   2011-07-01 EBI  
OM3 "Other modification" 2011-07-01 EBI  
OM3 "Modify descriptor"  2023-09-23 RCSB 
# 
