data_OK3
# 
_chem_comp.id                                    OK3 
_chem_comp.name                                  "(4~{R})-4-[[4-(aminomethyl)phenyl]carbonylamino]-3,3-bis(oxidanyl)-2-oxa-3-boranuidabicyclo[4.4.0]deca-1(10),6,8-triene-10-carboxylic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H18 B N2 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    -1 
_chem_comp.pdbx_initial_date                     2015-12-08 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        357.146 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     OK3 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5FQB 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
OK3 N01  N01  N 0  1 N N N N N N 53.672 10.370 29.728 7.886  0.945  1.119  N01  OK3 1  
OK3 C02  C02  C 0  1 N N N N N N 54.290 11.592 29.356 7.482  -0.319 0.489  C02  OK3 2  
OK3 C03  C03  C 0  1 Y N N N N N 55.370 11.329 28.307 6.021  -0.254 0.124  C03  OK3 3  
OK3 C04  C04  C 0  1 Y N N N N N 55.043 11.274 26.959 5.642  0.220  -1.119 C04  OK3 4  
OK3 C05  C05  C 0  1 Y N N N N N 56.039 11.025 25.998 4.307  0.282  -1.460 C05  OK3 5  
OK3 C06  C06  C 0  1 Y N N N N N 57.367 10.861 26.389 3.337  -0.134 -0.546 C06  OK3 6  
OK3 C07  C07  C 0  1 Y N N N N N 57.665 10.884 27.739 3.726  -0.612 0.706  C07  OK3 7  
OK3 C08  C08  C 0  1 Y N N N N N 56.697 11.133 28.702 5.065  -0.673 1.032  C08  OK3 8  
OK3 C09  C09  C 0  1 N N N N N N 58.440 10.540 25.329 1.904  -0.070 -0.904 C09  OK3 9  
OK3 O10  O10  O 0  1 N N N N N N 58.216 10.738 24.139 1.568  0.346  -1.996 O10  OK3 10 
OK3 N11  N11  N 0  1 N N N N N N 59.705 9.933  25.685 0.970  -0.473 -0.020 N11  OK3 11 
OK3 C12  C12  C 0  1 N N R N N N 60.650 9.529  24.663 -0.450 -0.410 -0.375 C12  OK3 12 
OK3 C13  C13  C 0  1 N N N N N N 61.689 10.492 24.247 -1.148 -1.711 0.037  C13  OK3 13 
OK3 C14  C14  C 0  1 Y N N N N N 62.960 10.326 25.057 -2.641 -1.494 0.028  C14  OK3 14 
OK3 C15  C15  C 0  1 Y N N N N N 63.394 9.080  25.463 -3.189 -0.225 0.006  C15  OK3 15 
OK3 O16  O16  O 0  1 N N N N N N 62.627 7.890  25.072 -2.440 0.902  -0.019 O16  OK3 16 
OK3 B17  B17  B -1 1 N N N N N N 61.244 8.112  25.308 -1.155 0.791  0.417  B17  OK3 17 
OK3 O18  O18  O 0  1 N N N N N N 60.447 6.774  24.677 -0.485 1.957  0.174  O18  OK3 18 
OK3 O19  O19  O 0  1 N N N N N N 61.093 8.042  26.964 -1.146 0.523  1.758  O19  OK3 19 
OK3 C20  C20  C 0  1 Y N N N N N 64.568 8.934  26.215 -4.590 -0.080 0.005  C20  OK3 20 
OK3 C21  C21  C 0  1 Y N N N N N 65.271 10.074 26.587 -5.409 -1.210 0.022  C21  OK3 21 
OK3 C22  C22  C 0  1 Y N N N N N 64.831 11.348 26.174 -4.843 -2.466 0.039  C22  OK3 22 
OK3 C23  C23  C 0  1 Y N N N N N 63.664 11.477 25.398 -3.466 -2.606 0.042  C23  OK3 23 
OK3 C24  C24  C 0  1 N N N N N N 64.970 7.551  26.687 -5.192 1.265  -0.012 C24  OK3 24 
OK3 O25  O25  O 0  1 N N N N N N 65.493 7.475  27.829 -4.479 2.249  -0.026 O25  OK3 25 
OK3 O26  O26  O 0  1 N N N N N N 64.724 6.488  26.051 -6.532 1.404  -0.013 O26  OK3 26 
OK3 H011 H011 H 0  0 N N N N N N 52.967 10.548 30.414 8.863  0.926  1.373  H011 OK3 27 
OK3 H012 H012 H 0  0 N N N N N N 53.255 9.949  28.923 7.684  1.730  0.517  H012 OK3 28 
OK3 H021 H021 H 0  0 N N N N N N 53.533 12.271 28.938 8.074  -0.482 -0.411 H021 OK3 29 
OK3 H022 H022 H 0  0 N N N N N N 54.748 12.054 30.243 7.646  -1.141 1.186  H022 OK3 30 
OK3 H04  H04  H 0  1 N N N N N N 54.020 11.423 26.647 6.394  0.543  -1.825 H04  OK3 31 
OK3 H08  H08  H 0  1 N N N N N N 56.966 11.175 29.747 5.368  -1.046 2.000  H08  OK3 32 
OK3 H05  H05  H 0  1 N N N N N N 55.774 10.961 24.953 4.013  0.652  -2.431 H05  OK3 33 
OK3 H07  H07  H 0  1 N N N N N N 58.682 10.703 28.054 2.980  -0.935 1.418  H07  OK3 34 
OK3 H11  H11  H 0  1 N N N N N N 59.930 9.791  26.649 1.238  -0.806 0.851  H11  OK3 35 
OK3 H12  H12  H 0  1 N N N N N N 60.083 9.236  23.767 -0.556 -0.258 -1.449 H12  OK3 36 
OK3 H131 H131 H 0  0 N N N N N N 61.920 10.331 23.184 -0.890 -2.502 -0.667 H131 OK3 37 
OK3 H132 H132 H 0  0 N N N N N N 61.306 11.513 24.389 -0.827 -1.995 1.040  H132 OK3 38 
OK3 H23  H23  H 0  1 N N N N N N 63.322 12.449 25.074 -3.030 -3.594 0.056  H23  OK3 39 
OK3 H18  H18  H 0  1 N N N N N N 60.804 5.982  25.061 -0.859 2.727  0.624  H18  OK3 40 
OK3 H19  H19  H 0  1 N N N N N N 61.445 7.218  27.280 -1.559 1.211  2.299  H19  OK3 41 
OK3 H21  H21  H 0  1 N N N N N N 66.159 9.983  27.195 -6.483 -1.100 0.021  H21  OK3 42 
OK3 H22  H22  H 0  1 N N N N N N 65.391 12.228 26.454 -5.475 -3.342 0.051  H22  OK3 43 
OK3 H26  H26  H 0  1 N N N N N N 64.991 5.739  26.570 -6.880 2.306  -0.024 H26  OK3 44 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
OK3 N01 C02  SING N N 1  
OK3 C02 C03  SING N N 2  
OK3 C03 C04  SING Y N 3  
OK3 C03 C08  DOUB Y N 4  
OK3 C04 C05  DOUB Y N 5  
OK3 C05 C06  SING Y N 6  
OK3 C06 C07  DOUB Y N 7  
OK3 C06 C09  SING N N 8  
OK3 C07 C08  SING Y N 9  
OK3 C09 O10  DOUB N N 10 
OK3 C09 N11  SING N N 11 
OK3 N11 C12  SING N N 12 
OK3 C12 C13  SING N N 13 
OK3 C12 B17  SING N N 14 
OK3 C13 C14  SING N N 15 
OK3 C14 C15  SING Y N 16 
OK3 C14 C23  DOUB Y N 17 
OK3 C15 O16  SING N N 18 
OK3 C15 C20  DOUB Y N 19 
OK3 O16 B17  SING N N 20 
OK3 B17 O18  SING N N 21 
OK3 B17 O19  SING N N 22 
OK3 C20 C21  SING Y N 23 
OK3 C20 C24  SING N N 24 
OK3 C21 C22  DOUB Y N 25 
OK3 C22 C23  SING Y N 26 
OK3 C24 O25  DOUB N N 27 
OK3 C24 O26  SING N N 28 
OK3 N01 H011 SING N N 29 
OK3 N01 H012 SING N N 30 
OK3 C02 H021 SING N N 31 
OK3 C02 H022 SING N N 32 
OK3 C04 H04  SING N N 33 
OK3 C08 H08  SING N N 34 
OK3 C05 H05  SING N N 35 
OK3 C07 H07  SING N N 36 
OK3 N11 H11  SING N N 37 
OK3 C12 H12  SING N N 38 
OK3 C13 H131 SING N N 39 
OK3 C13 H132 SING N N 40 
OK3 C23 H23  SING N N 41 
OK3 O18 H18  SING N N 42 
OK3 O19 H19  SING N N 43 
OK3 C21 H21  SING N N 44 
OK3 C22 H22  SING N N 45 
OK3 O26 H26  SING N N 46 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
OK3 InChI            InChI                1.03  "InChI=1S/C17H18BN2O6/c19-9-10-4-6-11(7-5-10)16(21)20-14-8-12-2-1-3-13(17(22)23)15(12)26-18(14,24)25/h1-7,14,24-25H,8-9,19H2,(H,20,21)(H,22,23)/q-1/t14-/m0/s1" 
OK3 InChIKey         InChI                1.03  QLXKUYDHLJOWQG-AWEZNQCLSA-N                                                                                                                                     
OK3 SMILES_CANONICAL CACTVS               3.385 "NCc1ccc(cc1)C(=O)N[C@H]2Cc3cccc(C(O)=O)c3O[B-]2(O)O"                                                                                                           
OK3 SMILES           CACTVS               3.385 "NCc1ccc(cc1)C(=O)N[CH]2Cc3cccc(C(O)=O)c3O[B-]2(O)O"                                                                                                            
OK3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[B-]1([C@H](Cc2cccc(c2O1)C(=O)O)NC(=O)c3ccc(cc3)CN)(O)O"                                                                                                       
OK3 SMILES           "OpenEye OEToolkits" 2.0.7 "[B-]1(C(Cc2cccc(c2O1)C(=O)O)NC(=O)c3ccc(cc3)CN)(O)O"                                                                                                           
# 
_pdbx_chem_comp_identifier.comp_id           OK3 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(4~{R})-4-[[4-(aminomethyl)phenyl]carbonylamino]-3,3-bis(oxidanyl)-2-oxa-3-boranuidabicyclo[4.4.0]deca-1(10),6,8-triene-10-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
OK3 "Create component"   2015-12-08 EBI  
OK3 "Initial release"    2016-08-10 RCSB 
OK3 "Other modification" 2019-10-18 PDBE 
OK3 "Modify PCM"         2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            OK3 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               B17 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
