data_JO3
# 
_chem_comp.id                                    JO3 
_chem_comp.name                                  "(2R)-2-methylbutanedioic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C5 H8 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-07-24 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        132.115 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     JO3 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4UU7 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
JO3 OAN  OAN  O 0 1 N Y N N N N -30.754 -26.753 -8.188 2.950  -0.470 0.351  OAN  JO3 1  
JO3 CAM  CAM  C 0 1 N N N N N N -31.520 -27.214 -7.323 1.857  0.270  0.108  CAM  JO3 2  
JO3 OAO  OAO  O 0 1 N Y N N N N -32.397 -28.068 -7.534 1.970  1.435  -0.189 OAO  JO3 3  
JO3 CAL  CAL  C 0 1 N N R N N N -31.379 -26.682 -5.872 0.488  -0.354 0.205  CAL  JO3 4  
JO3 CAQ  CAQ  C 0 1 N N N N N N -32.622 -25.856 -5.508 0.382  -1.509 -0.792 CAQ  JO3 5  
JO3 CAK  CAK  C 0 1 N N N N N N -30.103 -25.841 -5.725 -0.575 0.698  -0.117 CAK  JO3 6  
JO3 CAJ  CAJ  C 0 1 N N N N N N -30.493 -24.511 -5.036 -1.946 0.109  0.099  CAJ  JO3 7  
JO3 OAP  OAP  O 0 1 N Y N N N N -30.505 -23.447 -5.659 -2.060 -1.034 0.473  OAP  JO3 8  
JO3 OAG  OAG  O 0 1 N Y N N N N -30.787 -24.601 -3.732 -3.039 0.855  -0.124 OAG  JO3 9  
JO3 HAL  HAL  H 0 1 N N N N N N -31.315 -27.542 -5.190 0.332  -0.730 1.216  HAL  JO3 10 
JO3 HAQ1 HAQ1 H 0 0 N N N N N N -32.524 -25.478 -4.480 -0.608 -1.960 -0.721 HAQ1 JO3 11 
JO3 HAQ2 HAQ2 H 0 0 N N N N N N -32.715 -25.008 -6.203 0.539  -1.133 -1.803 HAQ2 JO3 12 
JO3 HAQ3 HAQ3 H 0 0 N N N N N N -33.518 -26.490 -5.581 1.140  -2.258 -0.562 HAQ3 JO3 13 
JO3 HAK1 HAK1 H 0 0 N N N N N N -29.368 -26.380 -5.110 -0.443 1.561  0.535  HAK1 JO3 14 
JO3 HAK2 HAK2 H 0 0 N N N N N N -29.672 -25.637 -6.716 -0.474 1.010  -1.157 HAK2 JO3 15 
JO3 HAG  HAG  H 0 1 N N N N N N -30.996 -23.738 -3.394 -3.896 0.434  0.029  HAG  JO3 16 
JO3 HAN  HAN  H 0 1 N N N N N N -30.945 -27.155 -9.027 3.806  -0.026 0.276  HAN  JO3 17 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
JO3 OAN CAM  SING N N 1  
JO3 CAM OAO  DOUB N N 2  
JO3 CAM CAL  SING N N 3  
JO3 CAL CAQ  SING N N 4  
JO3 CAL CAK  SING N N 5  
JO3 CAK CAJ  SING N N 6  
JO3 CAJ OAP  DOUB N N 7  
JO3 CAJ OAG  SING N N 8  
JO3 CAL HAL  SING N N 9  
JO3 CAQ HAQ1 SING N N 10 
JO3 CAQ HAQ2 SING N N 11 
JO3 CAQ HAQ3 SING N N 12 
JO3 CAK HAK1 SING N N 13 
JO3 CAK HAK2 SING N N 14 
JO3 OAG HAG  SING N N 15 
JO3 OAN HAN  SING N N 16 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
JO3 SMILES           ACDLabs              12.01 "O=C(O)CC(C(=O)O)C"                                                       
JO3 InChI            InChI                1.03  "InChI=1S/C5H8O4/c1-3(5(8)9)2-4(6)7/h3H,2H2,1H3,(H,6,7)(H,8,9)/t3-/m1/s1" 
JO3 InChIKey         InChI                1.03  WXUAQHNMJWJLTG-GSVOUGTGSA-N                                               
JO3 SMILES_CANONICAL CACTVS               3.385 "C[C@H](CC(O)=O)C(O)=O"                                                   
JO3 SMILES           CACTVS               3.385 "C[CH](CC(O)=O)C(O)=O"                                                    
JO3 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC(CC(=O)O)C(=O)O"                                                       
JO3 SMILES           "OpenEye OEToolkits" 1.7.6 "CC(CC(=O)O)C(=O)O"                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
JO3 "SYSTEMATIC NAME" ACDLabs              12.01 "(2R)-2-methylbutanedioic acid" 
JO3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "2-methylbutanedioic acid"      
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
JO3 "Create component" 2014-07-24 EBI  
JO3 "Modify name"      2014-08-04 EBI  
JO3 "Initial release"  2014-08-20 RCSB 
JO3 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            JO3 
_pdbx_chem_comp_pcm.modified_residue_id                LYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               CAJ 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   NZ 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
