data_IV3
# 
_chem_comp.id                                    IV3 
_chem_comp.name                                  ivosidenib 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C28 H22 Cl F3 N6 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "N-{(1S)-1-(2-chlorophenyl)-2-[(3,3-difluorocyclobutyl)amino]-2-oxoethyl}-1-(4-cyanopyridin-2-yl)-N-(5-fluoropyridin-3-yl)-5-oxo-L-prolinamide" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-07-04 
_chem_comp.pdbx_modified_date                    2024-08-23 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        582.961 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     IV3 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8T7O 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
IV3 N1  N1  N  0 1 N N N N N N 26.033 -10.492 4.431  -0.041 0.764  0.403  N1  IV3 1  
IV3 N3  N2  N  0 1 N N N N N N 28.662 -9.945  6.929  -3.695 1.087  0.418  N3  IV3 2  
IV3 C4  C1  C  0 1 N N S N N N 25.628 -10.094 3.058  0.970  -0.208 0.827  C4  IV3 3  
IV3 C5  C2  C  0 1 Y N N N N N 24.871 -11.164 2.282  0.717  -1.527 0.142  C5  IV3 4  
IV3 C6  C3  C  0 1 Y N N N N N 23.513 -11.006 2.013  0.097  -1.556 -1.093 C6  IV3 5  
IV3 C7  C4  C  0 1 Y N N N N N 22.801 -11.962 1.305  -0.135 -2.766 -1.721 C7  IV3 6  
IV3 C8  C5  C  0 1 Y N N N N N 23.428 -13.095 0.850  0.251  -3.946 -1.114 C8  IV3 7  
IV3 C10 C6  C  0 1 Y N N N N N 25.478 -12.325 1.802  1.109  -2.707 0.747  C10 IV3 8  
IV3 C13 C7  C  0 1 Y N N N N N 23.654 -13.114 6.590  1.052  3.979  -1.934 C13 IV3 9  
IV3 C15 C8  C  0 1 Y N N N N N 25.555 -12.772 5.186  0.500  3.119  0.228  C15 IV3 10 
IV3 C17 C9  C  0 1 N N S N N N 27.237 -9.852  6.504  -2.345 1.662  0.442  C17 IV3 11 
IV3 C20 C10 C  0 1 N N N N N N 29.089 -8.793  7.541  -4.573 1.875  1.063  C20 IV3 12 
IV3 C21 C11 C  0 1 Y N N N N N 29.452 -11.100 6.665  -4.026 -0.118 -0.199 C21 IV3 13 
IV3 C22 C12 C  0 1 Y N N N N N 29.434 -13.277 5.937  -3.360 -1.936 -1.461 C22 IV3 14 
IV3 C24 C13 C  0 1 Y N N N N N 31.532 -12.225 6.307  -5.644 -1.804 -0.747 C24 IV3 15 
IV3 C26 C14 C  0 1 Y N N N N N 30.854 -11.073 6.701  -5.329 -0.594 -0.123 C26 IV3 16 
IV3 N5  N3  N  0 1 N N N N N N 34.117 -12.201 6.208  -8.029 -2.753 -0.654 N5  IV3 17 
IV3 C25 C15 C  0 1 N N N N N N 32.974 -12.228 6.247  -6.974 -2.333 -0.695 C25 IV3 18 
IV3 C23 C16 C  0 1 Y N N N N N 30.810 -13.348 5.921  -4.628 -2.479 -1.434 C23 IV3 19 
IV3 N4  N4  N  0 1 Y N N N N N 28.745 -12.187 6.302  -3.097 -0.794 -0.855 N4  IV3 20 
IV3 O2  O1  O  0 1 N N N N N N 30.247 -8.407  7.598  -5.757 1.640  1.187  O2  IV3 21 
IV3 C19 C17 C  0 1 N N N N N N 27.874 -8.091  8.052  -3.870 3.097  1.612  C19 IV3 22 
IV3 C18 C18 C  0 1 N N N N N N 26.787 -8.489  7.068  -2.370 2.725  1.563  C18 IV3 23 
IV3 C16 C19 C  0 1 N N N N N N 27.125 -9.884  4.976  -1.330 0.595  0.759  C16 IV3 24 
IV3 O1  O2  O  0 1 N N N N N N 27.988 -9.376  4.279  -1.672 -0.417 1.334  O1  IV3 25 
IV3 C11 C20 C  0 1 Y N N N N N 25.227 -11.420 5.169  0.333  1.872  -0.366 C11 IV3 26 
IV3 C14 C21 C  0 1 Y N N N N N 24.729 -13.598 5.896  0.872  4.187  -0.577 C14 IV3 27 
IV3 F2  F1  F  0 1 N N N N N N 24.947 -14.938 5.850  1.056  5.414  -0.043 F2  IV3 28 
IV3 N2  N5  N  0 1 Y N N N N N 23.338 -11.816 6.592  0.876  2.785  -2.465 N2  IV3 29 
IV3 C12 C22 C  0 1 Y N N N N N 24.113 -10.995 5.882  0.528  1.745  -1.736 C12 IV3 30 
IV3 C3  C23 C  0 1 N N N N N N 24.937 -8.719  3.106  2.340  0.296  0.454  C3  IV3 31 
IV3 O   O3  O  0 1 N N N N N N 24.475 -8.284  4.160  2.473  1.416  0.006  O   IV3 32 
IV3 N   N6  N  0 1 N N N N N N 24.895 -8.034  1.961  3.418  -0.496 0.618  N   IV3 33 
IV3 C2  C24 C  0 1 N N N N N N 24.362 -6.677  1.861  4.750  -0.005 0.255  C2  IV3 34 
IV3 C1  C25 C  0 1 N N N N N N 25.191 -5.544  2.488  5.891  -0.701 1.016  C1  IV3 35 
IV3 C27 C26 C  0 1 N N N N N N 24.481 -5.959  0.507  5.316  -0.647 -1.023 C27 IV3 36 
IV3 C   C27 C  0 1 N N N N N N 25.592 -5.068  1.091  6.676  -0.686 -0.306 C   IV3 37 
IV3 F1  F2  F  0 1 N N N N N N 26.874 -5.378  0.702  7.400  -1.860 -0.541 F1  IV3 38 
IV3 F   F3  F  0 1 N N N N N N 25.456 -3.717  0.879  7.440  0.472  -0.491 F   IV3 39 
IV3 CL  CL1 CL 0 0 N N N N N N 27.164 -12.617 2.089  1.893  -2.670 2.296  CL  IV3 40 
IV3 C9  C28 C  0 1 Y N N N N N 24.775 -13.286 1.095  0.871  -3.918 0.121  C9  IV3 41 
IV3 H1  H1  H  0 1 N N N N N N 26.563 -9.932  2.502  0.914  -0.343 1.907  H1  IV3 42 
IV3 H2  H2  H  0 1 N N N N N N 23.004 -10.120 2.363  -0.205 -0.635 -1.568 H2  IV3 43 
IV3 H3  H3  H  0 1 N N N N N N 21.749 -11.815 1.111  -0.620 -2.788 -2.686 H3  IV3 44 
IV3 H4  H4  H  0 1 N N N N N N 22.869 -13.838 0.300  0.066  -4.891 -1.603 H4  IV3 45 
IV3 H5  H5  H  0 1 N N N N N N 23.042 -13.803 7.154  1.337  4.807  -2.567 H5  IV3 46 
IV3 H6  H6  H  0 1 N N N N N N 26.421 -13.151 4.663  0.352  3.252  1.289  H6  IV3 47 
IV3 H7  H7  H  0 1 N N N N N N 26.641 -10.663 6.948  -2.117 2.129  -0.516 H7  IV3 48 
IV3 H8  H8  H  0 1 N N N N N N 28.877 -14.153 5.637  -2.570 -2.454 -1.985 H8  IV3 49 
IV3 H9  H9  H  0 1 N N N N N N 31.389 -10.191 7.022  -6.086 -0.038 0.410  H9  IV3 50 
IV3 H10 H10 H  0 1 N N N N N N 31.314 -14.253 5.616  -4.832 -3.415 -1.933 H10 IV3 51 
IV3 H11 H11 H  0 1 N N N N N N 28.022 -7.001  8.053  -4.068 3.966  0.983  H11 IV3 52 
IV3 H12 H12 H  0 1 N N N N N N 27.625 -8.428  9.069  -4.185 3.290  2.637  H12 IV3 53 
IV3 H13 H13 H  0 1 N N N N N N 26.705 -7.745  6.262  -2.043 2.300  2.512  H13 IV3 54 
IV3 H14 H14 H  0 1 N N N N N N 25.818 -8.584  7.580  -1.762 3.589  1.294  H14 IV3 55 
IV3 H15 H15 H  0 1 N N N N N N 23.861 -9.945  5.860  0.400  0.781  -2.206 H15 IV3 56 
IV3 H16 H16 H  0 1 N N N N N N 25.245 -8.470  1.132  3.312  -1.391 0.975  H16 IV3 57 
IV3 H17 H17 H  0 1 N N N N N N 23.324 -6.630  2.223  4.817  1.082  0.265  H17 IV3 58 
IV3 H18 H18 H  0 1 N N N N N N 26.034 -5.891  3.104  6.336  -0.083 1.795  H18 IV3 59 
IV3 H19 H19 H  0 1 N N N N N N 24.597 -4.815  3.058  5.637  -1.702 1.363  H19 IV3 60 
IV3 H20 H20 H  0 1 N N N N N N 23.576 -5.412  0.206  4.905  -1.635 -1.234 H20 IV3 61 
IV3 H21 H21 H  0 1 N N N N N N 24.810 -6.606  -0.319 5.297  0.014  -1.889 H21 IV3 62 
IV3 H22 H22 H  0 1 N N N N N N 25.274 -14.175 0.739  1.173  -4.840 0.595  H22 IV3 63 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
IV3 C27 C   SING N N 1  
IV3 C27 C2  SING N N 2  
IV3 F1  C   SING N N 3  
IV3 C8  C9  DOUB Y N 4  
IV3 C8  C7  SING Y N 5  
IV3 F   C   SING N N 6  
IV3 C   C1  SING N N 7  
IV3 C9  C10 SING Y N 8  
IV3 C7  C6  DOUB Y N 9  
IV3 C10 CL  SING N N 10 
IV3 C10 C5  DOUB Y N 11 
IV3 C2  N   SING N N 12 
IV3 C2  C1  SING N N 13 
IV3 N   C3  SING N N 14 
IV3 C6  C5  SING Y N 15 
IV3 C5  C4  SING N N 16 
IV3 C4  C3  SING N N 17 
IV3 C4  N1  SING N N 18 
IV3 C3  O   DOUB N N 19 
IV3 O1  C16 DOUB N N 20 
IV3 N1  C16 SING N N 21 
IV3 N1  C11 SING N N 22 
IV3 C16 C17 SING N N 23 
IV3 C11 C15 DOUB Y N 24 
IV3 C11 C12 SING Y N 25 
IV3 C15 C14 SING Y N 26 
IV3 F2  C14 SING N N 27 
IV3 C12 N2  DOUB Y N 28 
IV3 C14 C13 DOUB Y N 29 
IV3 C23 C22 DOUB Y N 30 
IV3 C23 C24 SING Y N 31 
IV3 C22 N4  SING Y N 32 
IV3 N5  C25 TRIP N N 33 
IV3 C25 C24 SING N N 34 
IV3 N4  C21 DOUB Y N 35 
IV3 C24 C26 DOUB Y N 36 
IV3 C17 N3  SING N N 37 
IV3 C17 C18 SING N N 38 
IV3 C13 N2  SING Y N 39 
IV3 C21 C26 SING Y N 40 
IV3 C21 N3  SING N N 41 
IV3 N3  C20 SING N N 42 
IV3 C18 C19 SING N N 43 
IV3 C20 O2  DOUB N N 44 
IV3 C20 C19 SING N N 45 
IV3 C4  H1  SING N N 46 
IV3 C6  H2  SING N N 47 
IV3 C7  H3  SING N N 48 
IV3 C8  H4  SING N N 49 
IV3 C13 H5  SING N N 50 
IV3 C15 H6  SING N N 51 
IV3 C17 H7  SING N N 52 
IV3 C22 H8  SING N N 53 
IV3 C26 H9  SING N N 54 
IV3 C23 H10 SING N N 55 
IV3 C19 H11 SING N N 56 
IV3 C19 H12 SING N N 57 
IV3 C18 H13 SING N N 58 
IV3 C18 H14 SING N N 59 
IV3 C12 H15 SING N N 60 
IV3 N   H16 SING N N 61 
IV3 C2  H17 SING N N 62 
IV3 C1  H18 SING N N 63 
IV3 C1  H19 SING N N 64 
IV3 C27 H20 SING N N 65 
IV3 C27 H21 SING N N 66 
IV3 C9  H22 SING N N 67 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
IV3 SMILES           ACDLabs              12.01 "FC1(F)CC(C1)NC(=O)C(c1ccccc1Cl)N(c1cc(F)cnc1)C(=O)C1CCC(=O)N1c1nccc(C#N)c1"                                                                                                                                               
IV3 InChI            InChI                1.06  "InChI=1S/C28H22ClF3N6O3/c29-21-4-2-1-3-20(21)25(26(40)36-18-11-28(31,32)12-18)37(19-10-17(30)14-34-15-19)27(41)22-5-6-24(39)38(22)23-9-16(13-33)7-8-35-23/h1-4,7-10,14-15,18,22,25H,5-6,11-12H2,(H,36,40)/t22-,25-/m0/s1" 
IV3 InChIKey         InChI                1.06  WIJZXSAJMHAVGX-DHLKQENFSA-N                                                                                                                                                                                                
IV3 SMILES_CANONICAL CACTVS               3.385 "Fc1cncc(c1)N([C@H](C(=O)NC2CC(F)(F)C2)c3ccccc3Cl)C(=O)[C@@H]4CCC(=O)N4c5cc(ccn5)C#N"                                                                                                                                      
IV3 SMILES           CACTVS               3.385 "Fc1cncc(c1)N([CH](C(=O)NC2CC(F)(F)C2)c3ccccc3Cl)C(=O)[CH]4CCC(=O)N4c5cc(ccn5)C#N"                                                                                                                                         
IV3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)[C@@H](C(=O)NC2CC(C2)(F)F)N(c3cc(cnc3)F)C(=O)[C@@H]4CCC(=O)N4c5cc(ccn5)C#N)Cl"                                                                                                                                 
IV3 SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)C(C(=O)NC2CC(C2)(F)F)N(c3cc(cnc3)F)C(=O)C4CCC(=O)N4c5cc(ccn5)C#N)Cl"                                                                                                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
IV3 "SYSTEMATIC NAME" ACDLabs              12.01 "N-{(1S)-1-(2-chlorophenyl)-2-[(3,3-difluorocyclobutyl)amino]-2-oxoethyl}-1-(4-cyanopyridin-2-yl)-N-(5-fluoropyridin-3-yl)-5-oxo-L-prolinamide"                                                            
IV3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-~{N}-[(1~{S})-2-[[3,3-bis(fluoranyl)cyclobutyl]amino]-1-(2-chlorophenyl)-2-oxidanylidene-ethyl]-1-(4-cyanopyridin-2-yl)-~{N}-(5-fluoranylpyridin-3-yl)-5-oxidanylidene-pyrrolidine-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
IV3 "Create component" 2023-07-04 RCSB 
IV3 "Initial release"  2024-08-28 RCSB 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      IV3 
_pdbx_chem_comp_synonyms.name         "N-{(1S)-1-(2-chlorophenyl)-2-[(3,3-difluorocyclobutyl)amino]-2-oxoethyl}-1-(4-cyanopyridin-2-yl)-N-(5-fluoropyridin-3-yl)-5-oxo-L-prolinamide" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         "systematic name" 
# 
