data_EF3
# 
_chem_comp.id                                    EF3 
_chem_comp.name                                  "(E)-1-(1-methyl-6-{4-[3-(4-methylpiperazin-1-yl)propoxy]-3-(trifluoromethyl)phenyl}-1H-imidazo[4,5-c]pyridin-4-yl)methanimine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H27 F3 N6 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2010-05-25 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        460.495 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     EF3 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3N4C 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
EF3 C1   C1   C 0 1 Y N N N N N 13.673 3.423  24.018 6.463   -0.689 -0.061 C1   EF3 1  
EF3 C2   C2   C 0 1 Y N N N N N 12.821 4.370  24.596 5.604   -1.807 -0.100 C2   EF3 2  
EF3 N3   N3   N 0 1 Y N N N N N 12.261 3.723  25.671 6.422   -2.912 -0.170 N3   EF3 3  
EF3 C4   C4   C 0 1 Y N N N N N 12.765 2.458  25.716 7.706   -2.461 -0.172 C4   EF3 4  
EF3 N5   N5   N 0 1 Y N N N N N 13.614 2.246  24.739 7.723   -1.160 -0.108 N5   EF3 5  
EF3 C6   C6   C 0 1 Y N N N N N 14.151 8.827  20.533 0.426   1.456  0.055  C6   EF3 6  
EF3 C7   C7   C 0 1 Y N N N N N 13.291 9.825  21.008 -0.447  0.378  0.123  C7   EF3 7  
EF3 C8   C8   C 0 1 Y N N N N N 12.479 9.559  22.113 0.049   -0.919 0.155  C8   EF3 8  
EF3 C9   C9   C 0 1 Y N N N N N 12.520 8.309  22.744 1.409   -1.140 0.118  C9   EF3 9  
EF3 C10  C10  C 0 1 Y N N N N N 13.369 7.287  22.293 2.288   -0.059 0.049  C10  EF3 10 
EF3 C11  C11  C 0 1 Y N N N N N 14.179 7.573  21.180 1.787   1.242  0.018  C11  EF3 11 
EF3 C12  C12  C 0 1 Y N N N N N 13.424 5.962  22.948 3.751   -0.293 0.010  C12  EF3 12 
EF3 C13  C13  C 0 1 Y N N N N N 12.671 5.660  24.083 4.234   -1.598 -0.064 C13  EF3 13 
EF3 C14  C14  C 0 1 Y N N N N N 14.394 3.808  22.881 5.895   0.598  0.008  C14  EF3 14 
EF3 N15  N15  N 0 1 Y N N N N N 14.260 5.067  22.363 4.578   0.744  0.036  N15  EF3 15 
EF3 C16  C16  C 0 1 N N N N N N 11.306 4.276  26.598 5.991   -4.311 -0.230 C16  EF3 16 
EF3 O17  O17  O 0 1 N N N N N N 13.318 11.012 20.331 -1.788  0.593  0.160  O17  EF3 17 
EF3 C18  C18  C 0 1 N N N N N N 12.768 12.163 20.972 -2.628  -0.561 0.230  C18  EF3 18 
EF3 C19  C19  C 0 1 N N N N N N 12.356 13.157 19.888 -4.093  -0.124 0.263  C19  EF3 19 
EF3 C20  C20  C 0 1 N N N N N N 13.584 13.718 19.166 -4.993  -1.360 0.338  C20  EF3 20 
EF3 N21  N21  N 0 1 N N N N N N 14.362 14.658 19.987 -6.400  -0.940 0.370  N21  EF3 21 
EF3 C22  C22  C 0 1 N N N N N N 15.040 9.083  19.341 -0.116  2.862  0.015  C22  EF3 22 
EF3 F23  F23  F 0 1 N N N N N N 15.963 10.062 19.558 0.946   3.770  -0.052 F23  EF3 23 
EF3 F24  F24  F 0 1 N N N N N N 14.350 9.448  18.224 -0.933  3.015  -1.111 F24  EF3 24 
EF3 F25  F25  F 0 1 N N N N N N 15.765 7.987  18.969 -0.866  3.106  1.171  F25  EF3 25 
EF3 C26  C26  C 0 1 N N N N N N 15.330 2.947  22.148 6.768   1.786  0.050  C26  EF3 26 
EF3 N27  N27  N 0 1 N N N N N N 15.468 1.670  22.309 6.249   2.969  0.113  N27  EF3 27 
EF3 C28  C28  C 0 1 N N N N N N 16.506 15.957 20.243 -8.234  0.188  -0.795 C28  EF3 28 
EF3 N29  N29  N 0 1 N N N N N N 15.787 17.242 20.325 -9.115  -0.947 -0.486 N29  EF3 29 
EF3 C30  C30  C 0 1 N N N N N N 14.446 17.007 20.891 -8.726  -1.582 0.781  C30  EF3 30 
EF3 C31  C31  C 0 1 N N N N N N 13.655 15.954 20.083 -7.281  -2.075 0.679  C31  EF3 31 
EF3 C32  C32  C 0 1 N N N N N N 15.718 14.894 19.442 -6.789  -0.305 -0.897 C32  EF3 32 
EF3 C33  C33  C 0 1 N N N N N N 16.531 18.200 21.138 -10.523 -0.527 -0.454 C33  EF3 33 
EF3 H4   H4   H 0 1 N N N N N N 12.499 1.723  26.461 8.583   -3.090 -0.219 H4   EF3 34 
EF3 H8   H8   H 0 1 N N N N N N 11.813 10.324 22.484 -0.632  -1.755 0.208  H8   EF3 35 
EF3 H9   H9   H 0 1 N N N N N N 11.883 8.128  23.597 1.794   -2.148 0.142  H9   EF3 36 
EF3 H11  H11  H 0 1 N N N N N N 14.844 6.808  20.808 2.465   2.081  -0.036 H11  EF3 37 
EF3 H13  H13  H 0 1 N N N N N N 12.010 6.382  24.539 3.551   -2.435 -0.092 H13  EF3 38 
EF3 H16  H16  H 0 1 N N N N N N 11.044 3.518  27.351 5.864   -4.607 -1.271 H16  EF3 39 
EF3 H16A H16A H 0 0 N N N N N N 11.745 5.152  27.098 6.744   -4.943 0.239  H16A EF3 40 
EF3 H16B H16B H 0 0 N N N N N N 10.400 4.580  26.053 5.043   -4.422 0.298  H16B EF3 41 
EF3 H18  H18  H 0 1 N N N N N N 11.891 11.876 21.571 -2.455  -1.190 -0.644 H18  EF3 42 
EF3 H18A H18A H 0 0 N N N N N N 13.519 12.619 21.633 -2.396  -1.125 1.134  H18A EF3 43 
EF3 H19  H19  H 0 1 N N N N N N 11.714 12.644 19.157 -4.266  0.504  1.137  H19  EF3 44 
EF3 H19A H19A H 0 0 N N N N N N 11.804 13.987 20.354 -4.325  0.439  -0.641 H19A EF3 45 
EF3 H20  H20  H 0 1 N N N N N N 14.238 12.876 18.894 -4.820  -1.988 -0.536 H20  EF3 46 
EF3 H20A H20A H 0 0 N N N N N N 13.241 14.250 18.266 -4.761  -1.923 1.242  H20A EF3 47 
EF3 H26  H26  H 0 1 N N N N N N 15.959 3.421  21.409 7.842   1.668  0.027  H26  EF3 48 
EF3 HN27 HN27 H 0 0 N N N N N N 16.165 1.289  21.702 6.823   3.750  0.141  HN27 EF3 49 
EF3 H28  H28  H 0 1 N N N N N N 17.471 16.127 19.743 -8.534  0.633  -1.744 H28  EF3 50 
EF3 H28A H28A H 0 0 N N N N N N 16.665 15.579 21.264 -8.309  0.933  -0.003 H28A EF3 51 
EF3 H30  H30  H 0 1 N N N N N N 14.558 16.646 21.924 -8.807  -0.857 1.591  H30  EF3 52 
EF3 H30A H30A H 0 0 N N N N N N 13.887 17.954 20.877 -9.386  -2.426 0.982  H30A EF3 53 
EF3 H31  H31  H 0 1 N N N N N N 13.501 16.342 19.065 -7.206  -2.820 -0.113 H31  EF3 54 
EF3 H31A H31A H 0 0 N N N N N N 12.689 15.787 20.583 -6.981  -2.520 1.628  H31A EF3 55 
EF3 H32  H32  H 0 1 N N N N N N 16.277 13.947 19.478 -6.130  0.540  -1.098 H32  EF3 56 
EF3 H32A H32A H 0 0 N N N N N N 15.619 15.244 18.404 -6.708  -1.030 -1.707 H32A EF3 57 
EF3 H33  H33  H 0 1 N N N N N N 15.977 19.149 21.185 -10.803 -0.122 -1.427 H33  EF3 58 
EF3 H33A H33A H 0 0 N N N N N N 16.657 17.798 22.154 -11.153 -1.386 -0.223 H33A EF3 59 
EF3 H33B H33B H 0 0 N N N N N N 17.519 18.374 20.687 -10.656 0.238  0.310  H33B EF3 60 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
EF3 C1  C2   DOUB Y N 1  
EF3 C1  N5   SING Y N 2  
EF3 C1  C14  SING Y N 3  
EF3 C2  N3   SING Y N 4  
EF3 C2  C13  SING Y N 5  
EF3 N3  C4   SING Y N 6  
EF3 N3  C16  SING N N 7  
EF3 C4  N5   DOUB Y N 8  
EF3 C6  C7   DOUB Y N 9  
EF3 C6  C11  SING Y N 10 
EF3 C6  C22  SING N N 11 
EF3 C7  C8   SING Y N 12 
EF3 C7  O17  SING N N 13 
EF3 C8  C9   DOUB Y N 14 
EF3 C9  C10  SING Y N 15 
EF3 C10 C11  DOUB Y N 16 
EF3 C10 C12  SING Y N 17 
EF3 C12 C13  DOUB Y N 18 
EF3 C12 N15  SING Y N 19 
EF3 C14 N15  DOUB Y N 20 
EF3 C14 C26  SING N N 21 
EF3 O17 C18  SING N N 22 
EF3 C18 C19  SING N N 23 
EF3 C19 C20  SING N N 24 
EF3 C20 N21  SING N N 25 
EF3 N21 C31  SING N N 26 
EF3 N21 C32  SING N N 27 
EF3 C22 F23  SING N N 28 
EF3 C22 F24  SING N N 29 
EF3 C22 F25  SING N N 30 
EF3 C26 N27  DOUB N N 31 
EF3 C28 N29  SING N N 32 
EF3 C28 C32  SING N N 33 
EF3 N29 C30  SING N N 34 
EF3 N29 C33  SING N N 35 
EF3 C30 C31  SING N N 36 
EF3 C4  H4   SING N N 37 
EF3 C8  H8   SING N N 38 
EF3 C9  H9   SING N N 39 
EF3 C11 H11  SING N N 40 
EF3 C13 H13  SING N N 41 
EF3 C16 H16  SING N N 42 
EF3 C16 H16A SING N N 43 
EF3 C16 H16B SING N N 44 
EF3 C18 H18  SING N N 45 
EF3 C18 H18A SING N N 46 
EF3 C19 H19  SING N N 47 
EF3 C19 H19A SING N N 48 
EF3 C20 H20  SING N N 49 
EF3 C20 H20A SING N N 50 
EF3 C26 H26  SING N N 51 
EF3 N27 HN27 SING N N 52 
EF3 C28 H28  SING N N 53 
EF3 C28 H28A SING N N 54 
EF3 C30 H30  SING N N 55 
EF3 C30 H30A SING N N 56 
EF3 C31 H31  SING N N 57 
EF3 C31 H31A SING N N 58 
EF3 C32 H32  SING N N 59 
EF3 C32 H32A SING N N 60 
EF3 C33 H33  SING N N 61 
EF3 C33 H33A SING N N 62 
EF3 C33 H33B SING N N 63 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
EF3 SMILES           ACDLabs              12.01 "FC(F)(F)c4cc(c1nc(C=[N@H])c2ncn(c2c1)C)ccc4OCCCN3CCN(CC3)C"                                                                                                        
EF3 SMILES_CANONICAL CACTVS               3.370 "CN1CCN(CCCOc2ccc(cc2C(F)(F)F)c3cc4n(C)cnc4c(C=N)n3)CC1"                                                                                                            
EF3 SMILES           CACTVS               3.370 "CN1CCN(CCCOc2ccc(cc2C(F)(F)F)c3cc4n(C)cnc4c(C=N)n3)CC1"                                                                                                            
EF3 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "[H]/N=C/c1c2c(cc(n1)c3ccc(c(c3)C(F)(F)F)OCCCN4CCN(CC4)C)n(cn2)C"                                                                                                   
EF3 SMILES           "OpenEye OEToolkits" 1.7.0 "Cn1cnc2c1cc(nc2C=N)c3ccc(c(c3)C(F)(F)F)OCCCN4CCN(CC4)C"                                                                                                            
EF3 InChI            InChI                1.03  "InChI=1S/C23H27F3N6O/c1-30-7-9-32(10-8-30)6-3-11-33-21-5-4-16(12-17(21)23(24,25)26)18-13-20-22(19(14-27)29-18)28-15-31(20)2/h4-5,12-15,27H,3,6-11H2,1-2H3/b27-14+" 
EF3 InChIKey         InChI                1.03  MZJARPQAOGJEES-MZJWZYIUSA-N                                                                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
EF3 "SYSTEMATIC NAME" ACDLabs              12.01 "(E)-1-(1-methyl-6-{4-[3-(4-methylpiperazin-1-yl)propoxy]-3-(trifluoromethyl)phenyl}-1H-imidazo[4,5-c]pyridin-4-yl)methanimine" 
EF3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "[1-methyl-6-[4-[3-(4-methylpiperazin-1-yl)propoxy]-3-(trifluoromethyl)phenyl]imidazo[4,5-c]pyridin-4-yl]methanimine"           
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
EF3 "Create component"     2010-05-25 RCSB 
EF3 "Modify aromatic_flag" 2011-06-04 RCSB 
EF3 "Modify descriptor"    2011-06-04 RCSB 
EF3 "Modify PCM"           2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            EF3 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C26 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
