data_DV3
# 
_chem_comp.id                                    DV3 
_chem_comp.name                                  1,4-anhydro-2-deoxy-5-O-thiophosphono-D-erythro-pentitol 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C5 H11 O5 P S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-11-22 
_chem_comp.pdbx_modified_date                    2018-08-10 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        214.177 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     DV3 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6BOS 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
DV3 "O5'" O1  O 0 1 N N N -2.914 -39.567 2.045  -0.644 -0.323 -0.572 "O5'" DV3 1  
DV3 P     P1  P 0 1 N N N -2.104 -39.152 3.463  -2.203 -0.375 -0.174 P     DV3 2  
DV3 SP3   S1  S 0 1 N N N -1.883 -37.079 3.601  -2.706 1.360  0.936  SP3   DV3 3  
DV3 OP2   O2  O 0 1 N N N -0.752 -39.799 3.453  -2.463 -1.578 0.647  OP2   DV3 4  
DV3 OP3   O3  O 0 1 N N N -2.911 -39.645 4.624  -3.097 -0.434 -1.511 OP3   DV3 5  
DV3 "C2'" C1  C 0 1 N N N -3.596 -40.103 -1.854 3.735  0.832  0.549  "C2'" DV3 6  
DV3 "C5'" C2  C 0 1 N N N -3.033 -38.606 1.008  0.408  -0.369 0.394  "C5'" DV3 7  
DV3 "C4'" C3  C 0 1 N N R -4.265 -38.934 0.119  1.760  -0.301 -0.320 "C4'" DV3 8  
DV3 "O4'" O4  O 0 1 N N N -4.278 -38.098 -0.869 1.921  0.987  -0.939 "O4'" DV3 9  
DV3 "C1'" C4  C 0 1 N N N -4.188 -38.958 -2.227 3.324  1.318  -0.864 "C1'" DV3 10 
DV3 "C3'" C5  C 0 1 N N S -4.108 -40.389 -0.477 2.901  -0.464 0.702  "C3'" DV3 11 
DV3 "O3'" O5  O 0 1 N N N -5.357 -40.969 -0.595 3.695  -1.609 0.386  "O3'" DV3 12 
DV3 H1    H1  H 0 1 N N N -0.590 -36.947 3.640  -2.424 2.359  0.080  H1    DV3 13 
DV3 H2    H2  H 0 1 N N N -2.400 -40.272 5.122  -4.049 -0.467 -1.347 H2    DV3 14 
DV3 H3    H3  H 0 1 N N N -3.867 -40.918 -2.542 4.802  0.615  0.591  H3    DV3 15 
DV3 H4    H4  H 0 1 N N N -2.503 -39.984 -1.840 3.459  1.564  1.309  H4    DV3 16 
DV3 H5    H5  H 0 1 N N N -2.123 -38.622 0.390  0.314  0.477  1.074  H5    DV3 17 
DV3 H6    H6  H 0 1 N N N -3.158 -37.607 1.450  0.343  -1.299 0.958  H6    DV3 18 
DV3 H7    H7  H 0 1 N N N -5.176 -38.896 0.734  1.820  -1.084 -1.075 H7    DV3 19 
DV3 H8    H8  H 0 1 N N N -3.583 -38.434 -2.981 3.470  2.395  -0.957 H8    DV3 20 
DV3 H9    H9  H 0 1 N N N -5.192 -39.152 -2.633 3.886  0.786  -1.632 H9    DV3 21 
DV3 H10   H10 H 0 1 N N N -3.394 -40.980 0.115  2.500  -0.543 1.712  H10   DV3 22 
DV3 H11   H11 H 0 1 N N N -5.701 -41.159 0.270  4.462  -1.727 0.963  H11   DV3 23 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DV3 "C1'" "C2'" SING N N 1  
DV3 "C1'" "O4'" SING N N 2  
DV3 "C2'" "C3'" SING N N 3  
DV3 "O4'" "C4'" SING N N 4  
DV3 "O3'" "C3'" SING N N 5  
DV3 "C3'" "C4'" SING N N 6  
DV3 "C4'" "C5'" SING N N 7  
DV3 "C5'" "O5'" SING N N 8  
DV3 "O5'" P     SING N N 9  
DV3 OP2   P     DOUB N N 10 
DV3 P     SP3   SING N N 11 
DV3 P     OP3   SING N N 12 
DV3 SP3   H1    SING N N 13 
DV3 OP3   H2    SING N N 14 
DV3 "C2'" H3    SING N N 15 
DV3 "C2'" H4    SING N N 16 
DV3 "C5'" H5    SING N N 17 
DV3 "C5'" H6    SING N N 18 
DV3 "C4'" H7    SING N N 19 
DV3 "C1'" H8    SING N N 20 
DV3 "C1'" H9    SING N N 21 
DV3 "C3'" H10   SING N N 22 
DV3 "O3'" H11   SING N N 23 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
DV3 SMILES           ACDLabs              12.01 "O(P(S)(O)=O)CC1OCCC1O"                                                                 
DV3 InChI            InChI                1.03  "InChI=1S/C5H11O5PS/c6-4-1-2-9-5(4)3-10-11(7,8)12/h4-6H,1-3H2,(H2,7,8,12)/t4-,5+/m0/s1" 
DV3 InChIKey         InChI                1.03  PPLIRDZWRNAVLB-CRCLSJGQSA-N                                                             
DV3 SMILES_CANONICAL CACTVS               3.385 "O[C@H]1CCO[C@@H]1CO[P](O)(S)=O"                                                        
DV3 SMILES           CACTVS               3.385 "O[CH]1CCO[CH]1CO[P](O)(S)=O"                                                           
DV3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C1CO[C@@H]([C@H]1O)COP(=O)(O)S"                                                        
DV3 SMILES           "OpenEye OEToolkits" 2.0.6 "C1COC(C1O)COP(=O)(O)S"                                                                 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
DV3 "SYSTEMATIC NAME" ACDLabs              12.01 1,4-anhydro-2-deoxy-5-O-thiophosphono-D-erythro-pentitol                
DV3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[(2~{R},3~{S})-3-oxidanyloxolan-2-yl]methoxy-sulfanyl-phosphinic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
DV3 "Create component" 2017-11-22 RCSB 
DV3 "Initial release"  2018-08-15 RCSB 
# 
