data_DL3
# 
_chem_comp.id                                    DL3 
_chem_comp.name                                  "~{N}1-[(4-chlorophenyl)methyl]-~{N}1-cyclopentyl-~{N}4-[[2-(methylamino)pyrimidin-4-yl]methyl]-~{N}4-(piperidin-4-ylmethyl)benzene-1,4-disulfonamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C30 H39 Cl N6 O4 S2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-12-06 
_chem_comp.pdbx_modified_date                    2017-01-26 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        647.251 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     DL3 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5ML3 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
DL3 C4  C1  C  0 1 Y N N -36.501 0.067  -2.578 5.811  -0.390 -0.909 C4  DL3 1  
DL3 C5  C2  C  0 1 Y N N -36.667 0.242  -1.209 6.497  -1.587 -1.044 C5  DL3 2  
DL3 C6  C3  C  0 1 Y N N -36.978 -0.861 -0.413 7.881  -1.557 -1.084 C6  DL3 3  
DL3 N1  N1  N  0 1 Y N N -37.096 -2.124 -0.948 8.505  -0.394 -0.992 N1  DL3 4  
DL3 N3  N2  N  0 1 Y N N -36.617 -1.191 -3.038 6.496  0.739  -0.822 N3  DL3 5  
DL3 CBQ C4  C  0 1 N N N -37.473 -4.638 -2.060 9.969  1.945  -0.814 CBQ DL3 6  
DL3 NBP N3  N  0 1 N N N -37.015 -3.462 -2.821 8.505  1.932  -0.770 NBP DL3 7  
DL3 C2  C5  C  0 1 Y N N -36.905 -2.265 -2.271 7.820  0.733  -0.864 C2  DL3 8  
DL3 CAA C6  C  0 1 N N N -36.181 1.173  -3.439 4.305  -0.373 -0.867 CAA DL3 9  
DL3 NAH N4  N  0 1 N N N -37.277 2.205  -3.565 3.856  -0.352 0.528  NAH DL3 10 
DL3 CAI C7  C  0 1 N N N -37.897 2.513  -4.862 3.777  -1.600 1.291  CAI DL3 11 
DL3 CAJ C8  C  0 1 N N N -39.161 1.728  -5.210 2.727  -2.517 0.661  CAJ DL3 12 
DL3 CAK C9  C  0 1 N N N -40.011 2.539  -6.104 1.355  -1.839 0.717  CAK DL3 13 
DL3 CAL C10 C  0 1 N N N -41.036 1.600  -6.690 0.299  -2.786 0.141  CAL DL3 14 
DL3 NAM N5  N  0 1 N N N -41.745 0.812  -5.648 0.281  -4.031 0.919  NAM DL3 15 
DL3 CAN C11 C  0 1 N N N -41.468 1.258  -4.260 1.573  -4.724 0.842  CAN DL3 16 
DL3 CAO C12 C  0 1 N N N -39.980 1.452  -3.954 2.667  -3.835 1.438  CAO DL3 17 
DL3 SAP S1  S  0 1 N N N -36.930 3.810  -2.944 3.437  1.083  1.241  SAP DL3 18 
DL3 OAQ O1  O  0 1 N N N -36.221 3.541  -1.643 3.589  0.895  2.641  OAQ DL3 19 
DL3 OAR O2  O  0 1 N N N -38.194 4.589  -2.964 4.110  2.103  0.516  OAR DL3 20 
DL3 CAS C13 C  0 1 Y N N -35.815 4.675  -4.000 1.714  1.323  0.956  CAS DL3 21 
DL3 CAX C14 C  0 1 Y N N -36.247 5.607  -4.943 1.288  1.992  -0.177 CAX DL3 22 
DL3 CAW C15 C  0 1 Y N N -35.314 6.251  -5.757 -0.063 2.176  -0.403 CAW DL3 23 
DL3 CAT C16 C  0 1 Y N N -34.475 4.402  -3.857 0.790  0.839  1.862  CAT DL3 24 
DL3 CAU C17 C  0 1 Y N N -33.539 5.035  -4.651 -0.561 1.028  1.638  CAU DL3 25 
DL3 CAV C18 C  0 1 Y N N -33.958 5.965  -5.604 -0.988 1.691  0.503  CAV DL3 26 
DL3 SAY S2  S  0 1 N N N -32.750 6.769  -6.541 -2.710 1.927  0.215  SAY DL3 27 
DL3 OAZ O3  O  0 1 N N N -33.494 7.430  -7.663 -3.344 1.850  1.485  OAZ DL3 28 
DL3 OBA O4  O  0 1 N N N -31.700 5.794  -6.941 -2.823 3.054  -0.643 OBA DL3 29 
DL3 NBB N6  N  0 1 N N N -31.928 7.985  -5.668 -3.245 0.622  -0.654 NBB DL3 30 
DL3 CBE C19 C  0 1 N N N -32.346 8.898  -4.556 -3.217 0.656  -2.118 CBE DL3 31 
DL3 CBF C20 C  0 1 N N N -33.472 8.591  -3.636 -4.652 0.633  -2.673 CBF DL3 32 
DL3 CBG C21 C  0 1 N N N -33.223 9.820  -2.728 -4.770 -0.641 -3.535 CBG DL3 33 
DL3 CBH C22 C  0 1 N N N -32.420 10.869 -3.532 -3.673 -1.581 -2.977 CBH DL3 34 
DL3 CBI C23 C  0 1 N N N -32.418 10.308 -4.950 -2.513 -0.603 -2.663 CBI DL3 35 
DL3 CBC C24 C  0 1 N N N -30.533 7.656  -5.226 -3.745 -0.566 0.042  CBC DL3 36 
DL3 CBD C25 C  0 1 Y N N -29.589 8.148  -6.169 -5.237 -0.452 0.221  CBD DL3 37 
DL3 CBJ C26 C  0 1 Y N N -29.953 8.601  -7.445 -5.753 0.281  1.274  CBJ DL3 38 
DL3 CBK C27 C  0 1 Y N N -28.997 9.036  -8.358 -7.121 0.391  1.435  CBK DL3 39 
DL3 CBL C28 C  0 1 Y N N -27.668 9.024  -7.976 -7.975 -0.234 0.543  CBL DL3 40 
DL3 CL  CL1 CL 0 0 N N N -26.464 9.538  -9.078 -9.694 -0.096 0.744  CL  DL3 41 
DL3 CBM C29 C  0 1 Y N N -27.294 8.573  -6.717 -7.458 -0.967 -0.511 CBM DL3 42 
DL3 CBN C30 C  0 1 Y N N -28.255 8.137  -5.821 -6.090 -1.076 -0.671 CBN DL3 43 
DL3 H1  H1  H  0 1 N N N -36.556 1.221  -0.766 5.963  -2.523 -1.116 H1  DL3 44 
DL3 H2  H2  H  0 1 N N N -37.130 -0.721 0.647  8.445  -2.473 -1.188 H2  DL3 45 
DL3 H3  H3  H  0 1 N N N -37.486 -5.519 -2.718 10.363 1.352  0.011  H3  DL3 46 
DL3 H4  H4  H  0 1 N N N -36.788 -4.819 -1.218 10.308 1.522  -1.760 H4  DL3 47 
DL3 H5  H5  H  0 1 N N N -38.487 -4.453 -1.675 10.326 2.972  -0.727 H5  DL3 48 
DL3 H6  H6  H  0 1 N N N -37.651 -3.360 -3.586 8.015  2.764  -0.676 H6  DL3 49 
DL3 H7  H7  H  0 1 N N N -35.965 0.777  -4.442 3.937  0.515  -1.381 H7  DL3 50 
DL3 H8  H8  H  0 1 N N N -35.284 1.671  -3.041 3.918  -1.265 -1.360 H8  DL3 51 
DL3 H9  H9  H  0 1 N N N -37.152 2.313  -5.646 4.747  -2.096 1.278  H9  DL3 52 
DL3 H10 H10 H  0 1 N N N -38.155 3.582  -4.865 3.496  -1.379 2.321  H10 DL3 53 
DL3 H11 H11 H  0 1 N N N -38.888 0.779  -5.694 2.993  -2.718 -0.376 H11 DL3 54 
DL3 H12 H12 H  0 1 N N N -39.403 2.985  -6.905 1.107  -1.603 1.752  H12 DL3 55 
DL3 H13 H13 H  0 1 N N N -40.509 3.337  -5.534 1.380  -0.920 0.130  H13 DL3 56 
DL3 H14 H14 H  0 1 N N N -41.776 2.190  -7.251 -0.680 -2.311 0.192  H14 DL3 57 
DL3 H15 H15 H  0 1 N N N -40.527 0.904  -7.374 0.540  -3.010 -0.898 H15 DL3 58 
DL3 H16 H16 H  0 1 N N N -42.729 0.887  -5.812 0.022  -3.855 1.878  H16 DL3 59 
DL3 H18 H18 H  0 1 N N N -41.983 2.216  -4.095 1.519  -5.658 1.402  H18 DL3 60 
DL3 H19 H19 H  0 1 N N N -41.868 0.503  -3.568 1.808  -4.939 -0.200 H19 DL3 61 
DL3 H20 H20 H  0 1 N N N -39.596 0.539  -3.475 3.628  -4.344 1.367  H20 DL3 62 
DL3 H21 H21 H  0 1 N N N -39.869 2.303  -3.265 2.440  -3.631 2.485  H21 DL3 63 
DL3 H22 H22 H  0 1 N N N -37.299 5.830  -5.043 2.010  2.370  -0.885 H22 DL3 64 
DL3 H23 H23 H  0 1 N N N -35.640 6.965  -6.499 -0.396 2.698  -1.287 H23 DL3 65 
DL3 H24 H24 H  0 1 N N N -34.151 3.686  -3.117 1.123  0.313  2.744  H24 DL3 66 
DL3 H25 H25 H  0 1 N N N -32.489 4.812  -4.535 -1.284 0.649  2.346  H25 DL3 67 
DL3 H26 H26 H  0 1 N N N -31.474 8.875  -3.886 -2.699 1.552  -2.461 H26 DL3 68 
DL3 H27 H27 H  0 1 N N N -34.453 8.613  -4.133 -5.369 0.596  -1.853 H27 DL3 69 
DL3 H28 H28 H  0 1 N N N -33.350 7.633  -3.109 -4.830 1.516  -3.286 H28 DL3 70 
DL3 H29 H29 H  0 1 N N N -34.185 10.250 -2.414 -5.755 -1.092 -3.417 H29 DL3 71 
DL3 H30 H30 H  0 1 N N N -32.650 9.515  -1.840 -4.580 -0.410 -4.584 H30 DL3 72 
DL3 H31 H31 H  0 1 N N N -31.395 10.961 -3.144 -4.015 -2.078 -2.070 H31 DL3 73 
DL3 H32 H32 H  0 1 N N N -32.914 11.851 -3.499 -3.372 -2.312 -3.727 H32 DL3 74 
DL3 H33 H33 H  0 1 N N N -31.544 10.631 -5.534 -1.957 -0.367 -3.570 H33 DL3 75 
DL3 H34 H34 H  0 1 N N N -33.338 10.548 -5.503 -1.851 -1.027 -1.907 H34 DL3 76 
DL3 H35 H35 H  0 1 N N N -30.427 6.564  -5.142 -3.517 -1.454 -0.546 H35 DL3 77 
DL3 H36 H36 H  0 1 N N N -30.343 8.120  -4.247 -3.267 -0.643 1.019  H36 DL3 78 
DL3 H37 H37 H  0 1 N N N -30.996 8.613  -7.725 -5.087 0.768  1.970  H37 DL3 79 
DL3 H38 H38 H  0 1 N N N -29.286 9.375  -9.342 -7.524 0.963  2.258  H38 DL3 80 
DL3 H39 H39 H  0 1 N N N -26.251 8.562  -6.436 -8.124 -1.454 -1.207 H39 DL3 81 
DL3 H40 H40 H  0 1 N N N -27.958 7.786  -4.844 -5.686 -1.644 -1.496 H40 DL3 82 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DL3 CL  CBL SING N N 1  
DL3 CBK CBL DOUB Y N 2  
DL3 CBK CBJ SING Y N 3  
DL3 CBL CBM SING Y N 4  
DL3 OAZ SAY DOUB N N 5  
DL3 CBJ CBD DOUB Y N 6  
DL3 OBA SAY DOUB N N 7  
DL3 CBM CBN DOUB Y N 8  
DL3 CAL CAK SING N N 9  
DL3 CAL NAM SING N N 10 
DL3 SAY NBB SING N N 11 
DL3 SAY CAV SING N N 12 
DL3 CBD CBN SING Y N 13 
DL3 CBD CBC SING N N 14 
DL3 CAK CAJ SING N N 15 
DL3 CAW CAV DOUB Y N 16 
DL3 CAW CAX SING Y N 17 
DL3 NBB CBC SING N N 18 
DL3 NBB CBE SING N N 19 
DL3 NAM CAN SING N N 20 
DL3 CAV CAU SING Y N 21 
DL3 CAJ CAI SING N N 22 
DL3 CAJ CAO SING N N 23 
DL3 CBI CBE SING N N 24 
DL3 CBI CBH SING N N 25 
DL3 CAX CAS DOUB Y N 26 
DL3 CAI NAH SING N N 27 
DL3 CAU CAT DOUB Y N 28 
DL3 CBE CBF SING N N 29 
DL3 CAN CAO SING N N 30 
DL3 CAS CAT SING Y N 31 
DL3 CAS SAP SING N N 32 
DL3 CBF CBG SING N N 33 
DL3 NAH CAA SING N N 34 
DL3 NAH SAP SING N N 35 
DL3 CBH CBG SING N N 36 
DL3 CAA C4  SING N N 37 
DL3 N3  C4  DOUB Y N 38 
DL3 N3  C2  SING Y N 39 
DL3 OAR SAP DOUB N N 40 
DL3 SAP OAQ DOUB N N 41 
DL3 NBP C2  SING N N 42 
DL3 NBP CBQ SING N N 43 
DL3 C4  C5  SING Y N 44 
DL3 C2  N1  DOUB Y N 45 
DL3 C5  C6  DOUB Y N 46 
DL3 N1  C6  SING Y N 47 
DL3 C5  H1  SING N N 48 
DL3 C6  H2  SING N N 49 
DL3 CBQ H3  SING N N 50 
DL3 CBQ H4  SING N N 51 
DL3 CBQ H5  SING N N 52 
DL3 NBP H6  SING N N 53 
DL3 CAA H7  SING N N 54 
DL3 CAA H8  SING N N 55 
DL3 CAI H9  SING N N 56 
DL3 CAI H10 SING N N 57 
DL3 CAJ H11 SING N N 58 
DL3 CAK H12 SING N N 59 
DL3 CAK H13 SING N N 60 
DL3 CAL H14 SING N N 61 
DL3 CAL H15 SING N N 62 
DL3 NAM H16 SING N N 63 
DL3 CAN H18 SING N N 64 
DL3 CAN H19 SING N N 65 
DL3 CAO H20 SING N N 66 
DL3 CAO H21 SING N N 67 
DL3 CAX H22 SING N N 68 
DL3 CAW H23 SING N N 69 
DL3 CAT H24 SING N N 70 
DL3 CAU H25 SING N N 71 
DL3 CBE H26 SING N N 72 
DL3 CBF H27 SING N N 73 
DL3 CBF H28 SING N N 74 
DL3 CBG H29 SING N N 75 
DL3 CBG H30 SING N N 76 
DL3 CBH H31 SING N N 77 
DL3 CBH H32 SING N N 78 
DL3 CBI H33 SING N N 79 
DL3 CBI H34 SING N N 80 
DL3 CBC H35 SING N N 81 
DL3 CBC H36 SING N N 82 
DL3 CBJ H37 SING N N 83 
DL3 CBK H38 SING N N 84 
DL3 CBM H39 SING N N 85 
DL3 CBN H40 SING N N 86 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
DL3 InChI            InChI                1.03  
"InChI=1S/C30H39ClN6O4S2/c1-32-30-34-19-16-26(35-30)22-36(20-24-14-17-33-18-15-24)42(38,39)28-10-12-29(13-11-28)43(40,41)37(27-4-2-3-5-27)21-23-6-8-25(31)9-7-23/h6-13,16,19,24,27,33H,2-5,14-15,17-18,20-22H2,1H3,(H,32,34,35)" 
DL3 InChIKey         InChI                1.03  FWBBCSKXUXMTJY-UHFFFAOYSA-N 
DL3 SMILES_CANONICAL CACTVS               3.385 "CNc1nccc(CN(CC2CCNCC2)[S](=O)(=O)c3ccc(cc3)[S](=O)(=O)N(Cc4ccc(Cl)cc4)C5CCCC5)n1" 
DL3 SMILES           CACTVS               3.385 "CNc1nccc(CN(CC2CCNCC2)[S](=O)(=O)c3ccc(cc3)[S](=O)(=O)N(Cc4ccc(Cl)cc4)C5CCCC5)n1" 
DL3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CNc1nccc(n1)CN(CC2CCNCC2)S(=O)(=O)c3ccc(cc3)S(=O)(=O)N(Cc4ccc(cc4)Cl)C5CCCC5" 
DL3 SMILES           "OpenEye OEToolkits" 2.0.6 "CNc1nccc(n1)CN(CC2CCNCC2)S(=O)(=O)c3ccc(cc3)S(=O)(=O)N(Cc4ccc(cc4)Cl)C5CCCC5" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
DL3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "~{N}1-[(4-chlorophenyl)methyl]-~{N}1-cyclopentyl-~{N}4-[[2-(methylamino)pyrimidin-4-yl]methyl]-~{N}4-(piperidin-4-ylmethyl)benzene-1,4-disulfonamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
DL3 "Create component" 2016-12-06 RCSB 
DL3 "Initial release"  2017-02-01 RCSB 
# 
