data_9D3
#

_chem_comp.id                                   9D3
_chem_comp.name                                 "N-({4-[(diethylamino)methyl]phenyl}methyl)-4-oxo-3,4-dihydrothieno[2,3-d]pyrimidine-5-carboxamide"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C19 H22 N4 O2 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2018-03-16
_chem_comp.pdbx_modified_date                   2019-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       370.469
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    9D3
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5ZHM
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
9D3  CAA  C1   C  0  1  N  N  N  47.715  123.282  20.650  -5.477   2.978  -0.896  CAA  9D3   1  
9D3  CAK  C2   C  0  1  N  N  N  48.259  122.209  19.676  -5.566   1.482  -1.200  CAK  9D3   2  
9D3  NAZ  N1   N  0  1  N  N  N  47.880  120.804  20.004  -5.915   0.752   0.026  NAZ  9D3   3  
9D3  CAL  C3   C  0  1  N  N  N  48.639  120.260  21.167  -7.269   1.097   0.477  CAL  9D3   4  
9D3  CAB  C4   C  0  1  N  N  N  47.784  120.127  22.440  -7.450   0.660   1.932  CAB  9D3   5  
9D3  CAN  C5   C  0  1  N  N  N  48.196  119.959  18.822  -5.777  -0.698  -0.167  CAN  9D3   6  
9D3  CAU  C6   C  0  1  Y  N  N  47.091  119.213  18.394  -4.317  -1.070  -0.154  CAU  9D3   7  
9D3  CAH  C7   C  0  1  Y  N  N  46.342  119.662  17.297  -3.625  -1.193  -1.344  CAH  9D3   8  
9D3  CAF  C8   C  0  1  Y  N  N  45.213  118.965  16.849  -2.285  -1.535  -1.332  CAF  9D3   9  
9D3  CAG  C9   C  0  1  Y  N  N  46.738  118.016  19.035  -3.669  -1.284   1.049  CAG  9D3  10  
9D3  CAE  C10  C  0  1  Y  N  N  45.612  117.311  18.590  -2.330  -1.625   1.061  CAE  9D3  11  
9D3  CAT  C11  C  0  1  Y  N  N  44.844  117.798  17.515  -1.639  -1.754  -0.130  CAT  9D3  12  
9D3  CAM  C12  C  0  1  N  N  N  43.734  117.105  17.096  -0.179  -2.128  -0.117  CAM  9D3  13  
9D3  NAP  N2   N  0  1  N  N  N  44.175  116.193  16.047   0.636  -0.912  -0.053  NAP  9D3  14  
9D3  CAS  C13  C  0  1  N  N  N  44.017  114.869  16.109   1.981  -1.002  -0.031  CAS  9D3  15  
9D3  OAC  O1   O  0  1  N  N  N  43.511  114.344  17.108   2.518  -2.093  -0.064  OAC  9D3  16  
9D3  CAV  C14  C  0  1  Y  N  N  44.456  114.100  15.069   2.798   0.218   0.034  CAV  9D3  17  
9D3  CAY  C15  C  0  1  Y  N  N  44.841  114.477  13.790   4.257   0.199   0.055  CAY  9D3  18  
9D3  CAW  C16  C  0  1  N  N  N  44.918  115.680  13.132   5.170  -0.896   0.027  CAW  9D3  19  
9D3  OAD  O2   O  0  1  N  N  N  44.601  116.764  13.638   4.763  -2.044  -0.023  OAD  9D3  20  
9D3  NAQ  N3   N  0  1  N  N  N  45.369  115.769  11.769   6.493  -0.636   0.056  NAQ  9D3  21  
9D3  CAI  C17  C  0  1  N  N  N  45.659  114.682  11.086   6.937   0.645   0.112  CAI  9D3  22  
9D3  NAO  N4   N  0  1  N  N  N  45.546  113.464  11.754   6.118   1.655   0.138  NAO  9D3  23  
9D3  CAX  C18  C  0  1  Y  N  N  45.183  113.382  13.043   4.779   1.484   0.111  CAX  9D3  24  
9D3  SAR  S1   S  0  1  Y  N  N  44.971  111.972  13.933   3.469   2.655   0.136  SAR  9D3  25  
9D3  CAJ  C19  C  0  1  Y  N  N  44.435  112.764  15.295   2.272   1.449   0.072  CAJ  9D3  26  
9D3  H1   H1   H  0  1  N  N  N  48.048  124.278  20.323  -5.219   3.520  -1.806  H1   9D3  27  
9D3  H2   H2   H  0  1  N  N  N  46.616  123.247  20.657  -6.440   3.331  -0.525  H2   9D3  28  
9D3  H3   H3   H  0  1  N  N  N  48.094  123.083  21.663  -4.711   3.151  -0.140  H3   9D3  29  
9D3  H4   H4   H  0  1  N  N  N  49.357  122.274  19.676  -6.332   1.309  -1.956  H4   9D3  30  
9D3  H5   H5   H  0  1  N  N  N  47.878  122.438  18.670  -4.603   1.129  -1.571  H5   9D3  31  
9D3  H7   H7   H  0  1  N  N  N  49.024  119.265  20.899  -7.414   2.175   0.401  H7   9D3  32  
9D3  H8   H8   H  0  1  N  N  N  49.482  120.934  21.381  -8.002   0.588  -0.150  H8   9D3  33  
9D3  H9   H9   H  0  1  N  N  N  48.401  119.722  23.256  -8.461   0.900   2.260  H9   9D3  34  
9D3  H10  H10  H  0  1  N  N  N  47.399  121.116  22.728  -7.288  -0.415   2.010  H10  9D3  35  
9D3  H11  H11  H  0  1  N  N  N  46.941  119.448  22.246  -6.730   1.183   2.560  H11  9D3  36  
9D3  H12  H12  H  0  1  N  N  N  49.009  119.267  19.088  -6.293  -1.222   0.638  H12  9D3  37  
9D3  H13  H13  H  0  1  N  N  N  48.524  120.610  17.999  -6.216  -0.980  -1.124  H13  9D3  38  
9D3  H14  H14  H  0  1  N  N  N  46.642  120.565  16.786  -4.130  -1.022  -2.283  H14  9D3  39  
9D3  H15  H15  H  0  1  N  N  N  44.641  119.324  16.006  -1.744  -1.632  -2.261  H15  9D3  40  
9D3  H16  H16  H  0  1  N  N  N  47.326  117.643  19.860  -4.209  -1.183   1.979  H16  9D3  41  
9D3  H17  H17  H  0  1  N  N  N  45.331  116.388  19.075  -1.823  -1.791   2.000  H17  9D3  42  
9D3  H18  H18  H  0  1  N  N  N  42.981  117.802  16.700   0.029  -2.751   0.753  H18  9D3  43  
9D3  H19  H19  H  0  1  N  N  N  43.304  116.538  17.934   0.063  -2.680  -1.025  H19  9D3  44  
9D3  H20  H20  H  0  1  N  N  N  44.619  116.580  15.239   0.208  -0.042  -0.026  H20  9D3  45  
9D3  H21  H21  H  0  1  N  N  N  45.971  114.732  10.053   8.000   0.831   0.135  H21  9D3  46  
9D3  H23  H23  H  0  1  N  N  N  44.121  112.289  16.213   1.211   1.652   0.060  H23  9D3  47  
9D3  H6   H6   H  0  1  N  N  N  45.463  116.666  11.336   7.129  -1.367   0.039  H6   9D3  48  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
9D3  CAI  NAO  DOUB  N  N   1  
9D3  CAI  NAQ  SING  N  N   2  
9D3  NAO  CAX  SING  N  N   3  
9D3  NAQ  CAW  SING  N  N   4  
9D3  CAX  CAY  DOUB  Y  N   5  
9D3  CAX  SAR  SING  Y  N   6  
9D3  CAW  OAD  DOUB  N  N   7  
9D3  CAW  CAY  SING  N  N   8  
9D3  CAY  CAV  SING  Y  N   9  
9D3  SAR  CAJ  SING  Y  N  10  
9D3  CAV  CAJ  DOUB  Y  N  11  
9D3  CAV  CAS  SING  N  N  12  
9D3  NAP  CAS  SING  N  N  13  
9D3  NAP  CAM  SING  N  N  14  
9D3  CAS  OAC  DOUB  N  N  15  
9D3  CAF  CAH  DOUB  Y  N  16  
9D3  CAF  CAT  SING  Y  N  17  
9D3  CAM  CAT  SING  N  N  18  
9D3  CAH  CAU  SING  Y  N  19  
9D3  CAT  CAE  DOUB  Y  N  20  
9D3  CAU  CAN  SING  N  N  21  
9D3  CAU  CAG  DOUB  Y  N  22  
9D3  CAE  CAG  SING  Y  N  23  
9D3  CAN  NAZ  SING  N  N  24  
9D3  CAK  NAZ  SING  N  N  25  
9D3  CAK  CAA  SING  N  N  26  
9D3  NAZ  CAL  SING  N  N  27  
9D3  CAL  CAB  SING  N  N  28  
9D3  CAA  H1   SING  N  N  29  
9D3  CAA  H2   SING  N  N  30  
9D3  CAA  H3   SING  N  N  31  
9D3  CAK  H4   SING  N  N  32  
9D3  CAK  H5   SING  N  N  33  
9D3  CAL  H7   SING  N  N  34  
9D3  CAL  H8   SING  N  N  35  
9D3  CAB  H9   SING  N  N  36  
9D3  CAB  H10  SING  N  N  37  
9D3  CAB  H11  SING  N  N  38  
9D3  CAN  H12  SING  N  N  39  
9D3  CAN  H13  SING  N  N  40  
9D3  CAH  H14  SING  N  N  41  
9D3  CAF  H15  SING  N  N  42  
9D3  CAG  H16  SING  N  N  43  
9D3  CAE  H17  SING  N  N  44  
9D3  CAM  H18  SING  N  N  45  
9D3  CAM  H19  SING  N  N  46  
9D3  NAP  H20  SING  N  N  47  
9D3  CAI  H21  SING  N  N  48  
9D3  CAJ  H23  SING  N  N  49  
9D3  NAQ  H6   SING  N  N  50  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
9D3  SMILES            ACDLabs               12.01  "CCN(CC)Cc1ccc(cc1)CNC(=O)c2csc3c2C(=O)NC=N3"  
9D3  InChI             InChI                 1.03   "InChI=1S/C19H22N4O2S/c1-3-23(4-2)10-14-7-5-13(6-8-14)9-20-17(24)15-11-26-19-16(15)18(25)21-12-22-19/h5-8,11-12H,3-4,9-10H2,1-2H3,(H,20,24)(H,21,22,25)"  
9D3  InChIKey          InChI                 1.03   SNPTXDKRQKLKGA-UHFFFAOYSA-N  
9D3  SMILES_CANONICAL  CACTVS                3.385  "CCN(CC)Cc1ccc(CNC(=O)c2csc3N=CNC(=O)c23)cc1"  
9D3  SMILES            CACTVS                3.385  "CCN(CC)Cc1ccc(CNC(=O)c2csc3N=CNC(=O)c23)cc1"  
9D3  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "CCN(CC)Cc1ccc(cc1)CNC(=O)c2csc3c2C(=O)NC=N3"  
9D3  SMILES            "OpenEye OEToolkits"  2.0.6  "CCN(CC)Cc1ccc(cc1)CNC(=O)c2csc3c2C(=O)NC=N3"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
9D3  "SYSTEMATIC NAME"  ACDLabs               12.01  "N-({4-[(diethylamino)methyl]phenyl}methyl)-4-oxo-3,4-dihydrothieno[2,3-d]pyrimidine-5-carboxamide"  
9D3  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "~{N}-[[4-(diethylaminomethyl)phenyl]methyl]-4-oxidanylidene-3~{H}-thieno[2,3-d]pyrimidine-5-carboxamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
9D3  "Create component"  2018-03-16  RCSB  
9D3  "Initial release"   2019-03-06  RCSB  
##
