data_8R3
# 
_chem_comp.id                                    8R3 
_chem_comp.name                                  "3-[2-[(3Z,6R)-6-[(5-chloranyl-2-methoxy-phenyl)methyl]-3-(dimethylhydrazinylidene)-7-oxidanylidene-1,4-diazepan-1-yl]ethanoylamino]benzoic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H28 Cl N5 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-08-29 
_chem_comp.pdbx_modified_date                    2017-11-24 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        501.963 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     8R3 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5Y9L 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
8R3 C1  C1  C  0 1 N N N 18.986 39.582 21.814 -0.739 -0.617 -1.439 C1  8R3 1  
8R3 O2  O1  O  0 1 N N N 17.917 39.588 22.464 -0.243 -0.262 -2.488 O2  8R3 2  
8R3 O32 O2  O  0 1 N N N 16.527 48.014 23.565 9.064  1.079  1.086  O32 8R3 3  
8R3 C31 C2  C  0 1 N N N 17.197 46.962 23.307 8.168  0.184  0.626  C31 8R3 4  
8R3 O33 O3  O  0 1 N N N 17.889 46.902 22.243 8.497  -0.973 0.457  O33 8R3 5  
8R3 C26 C3  C  0 1 Y N N 17.152 45.796 24.272 6.786  0.610  0.327  C26 8R3 6  
8R3 C25 C4  C  0 1 Y N N 17.890 44.631 24.036 5.854  -0.315 -0.143 C25 8R3 7  
8R3 C27 C5  C  0 1 Y N N 16.392 45.836 25.453 6.405  1.940  0.521  C27 8R3 8  
8R3 C28 C6  C  0 1 Y N N 16.371 44.753 26.328 5.112  2.335  0.242  C28 8R3 9  
8R3 C29 C7  C  0 1 Y N N 17.109 43.606 26.062 4.191  1.418  -0.229 C29 8R3 10 
8R3 C21 C8  C  0 1 Y N N 17.887 43.524 24.911 4.558  0.092  -0.421 C21 8R3 11 
8R3 N20 N1  N  0 1 N N N 18.609 42.326 24.712 3.620  -0.833 -0.893 N20 8R3 12 
8R3 C19 C9  C  0 1 N N N 19.451 42.005 23.642 2.320  -0.704 -0.561 C19 8R3 13 
8R3 O30 O4  O  0 1 N N N 19.712 42.695 22.647 1.942  0.283  0.034  O30 8R3 14 
8R3 C17 C10 C  0 1 N N N 20.112 40.619 23.714 1.338  -1.786 -0.928 C17 8R3 15 
8R3 N16 N2  N  0 1 N N N 20.177 40.082 22.352 -0.017 -1.355 -0.576 N16 8R3 16 
8R3 C15 C11 C  0 1 N N N 21.472 40.152 21.647 -0.598 -1.725 0.721  C15 8R3 17 
8R3 C13 C12 C  0 1 N N N 22.062 38.792 21.249 -1.730 -2.697 0.489  C13 8R3 18 
8R3 N14 N3  N  0 1 N N N 23.340 38.624 21.464 -1.557 -3.962 0.688  N14 8R3 19 
8R3 N62 N4  N  0 1 N N N 23.800 37.402 21.072 -2.573 -4.869 0.356  N62 8R3 20 
8R3 C68 C13 C  0 1 N N N 24.215 36.441 22.109 -3.119 -4.891 -1.003 C68 8R3 21 
8R3 C63 C14 C  0 1 N N N 24.766 37.539 19.964 -3.088 -5.793 1.369  C63 8R3 22 
8R3 N12 N5  N  0 1 N N N 21.289 37.794 20.715 -2.962 -2.214 0.059  N12 8R3 23 
8R3 C11 C15 C  0 1 N N N 19.893 37.730 20.398 -3.054 -1.466 -1.199 C11 8R3 24 
8R3 C3  C16 C  0 1 N N R 19.073 39.015 20.387 -2.156 -0.221 -1.111 C3  8R3 25 
8R3 C4  C17 C  0 1 N N N 17.703 38.742 19.721 -2.217 0.355  0.305  C4  8R3 26 
8R3 C5  C18 C  0 1 Y N N 17.704 38.000 18.396 -3.200 1.497  0.340  C5  8R3 27 
8R3 C10 C19 C  0 1 Y N N 17.138 36.699 18.338 -2.778 2.781  0.053  C10 8R3 28 
8R3 C6  C20 C  0 1 Y N N 18.255 38.575 17.216 -4.529 1.259  0.656  C6  8R3 29 
8R3 O23 O5  O  0 1 N N N 18.780 39.850 17.372 -4.947 -0.004 0.935  O23 8R3 30 
8R3 C24 C21 C  0 1 N N N 19.399 40.635 16.339 -6.349 -0.193 1.139  C24 8R3 31 
8R3 C7  C22 C  0 1 Y N N 18.211 37.812 16.020 -5.432 2.312  0.688  C7  8R3 32 
8R3 C8  C23 C  0 1 Y N N 17.635 36.530 15.980 -5.005 3.595  0.406  C8  8R3 33 
8R3 C9  C24 C  0 1 Y N N 17.105 35.964 17.140 -3.680 3.830  0.086  C9  8R3 34 
8R3 CL2 CL1 CL 0 0 N N N 16.416 34.371 17.067 -3.145 5.443  -0.269 CL2 8R3 35 
8R3 H1  H1  H  0 1 N N N 16.653 48.649 22.870 9.957  0.754  1.267  H1  8R3 36 
8R3 H2  H2  H  0 1 N N N 18.491 44.576 23.141 6.142  -1.346 -0.292 H2  8R3 37 
8R3 H3  H3  H  0 1 N N N 15.816 46.719 25.686 7.121  2.659  0.889  H3  8R3 38 
8R3 H4  H4  H  0 1 N N N 15.773 44.805 27.226 4.819  3.364  0.393  H4  8R3 39 
8R3 H5  H5  H  0 1 N N N 17.079 42.775 26.751 3.181  1.733  -0.446 H5  8R3 40 
8R3 H6  H6  H  0 1 N N N 18.506 41.626 25.418 3.905  -1.567 -1.460 H6  8R3 41 
8R3 H7  H7  H  0 1 N N N 19.513 39.952 24.351 1.391  -1.977 -2.000 H7  8R3 42 
8R3 H8  H8  H  0 1 N N N 21.127 40.709 24.129 1.582  -2.698 -0.384 H8  8R3 43 
8R3 H9  H9  H  0 1 N N N 22.193 40.659 22.305 0.165  -2.194 1.342  H9  8R3 44 
8R3 H10 H10 H  0 1 N N N 21.332 40.745 20.731 -0.976 -0.832 1.220  H10 8R3 45 
8R3 H12 H12 H  0 1 N N N 23.447 36.395 22.896 -2.555 -4.204 -1.633 H12 8R3 46 
8R3 H13 H13 H  0 1 N N N 24.337 35.445 21.658 -3.044 -5.901 -1.407 H13 8R3 47 
8R3 H14 H14 H  0 1 N N N 25.170 36.765 22.548 -4.166 -4.587 -0.979 H14 8R3 48 
8R3 H15 H15 H  0 1 N N N 25.124 36.543 19.664 -3.924 -5.330 1.893  H15 8R3 49 
8R3 H16 H16 H  0 1 N N N 24.275 38.026 19.108 -3.426 -6.710 0.885  H16 8R3 50 
8R3 H17 H17 H  0 1 N N N 25.618 38.151 20.294 -2.298 -6.029 2.082  H17 8R3 51 
8R3 H18 H18 H  0 1 N N N 19.427 37.058 21.133 -2.725 -2.098 -2.024 H18 8R3 52 
8R3 H19 H19 H  0 1 N N N 19.811 37.288 19.394 -4.087 -1.159 -1.365 H19 8R3 53 
8R3 H20 H20 H  0 1 N N N 19.605 39.751 19.766 -2.500 0.527  -1.825 H20 8R3 54 
8R3 H21 H21 H  0 1 N N N 17.218 39.715 19.554 -2.538 -0.422 0.999  H21 8R3 55 
8R3 H22 H22 H  0 1 N N N 17.104 38.151 20.429 -1.230 0.715  0.594  H22 8R3 56 
8R3 H23 H23 H  0 1 N N N 16.723 36.264 19.235 -1.744 2.965  -0.198 H23 8R3 57 
8R3 H24 H24 H  0 1 N N N 19.719 41.602 16.755 -6.546 -1.244 1.352  H24 8R3 58 
8R3 H25 H25 H  0 1 N N N 20.274 40.098 15.945 -6.679 0.416  1.980  H25 8R3 59 
8R3 H26 H26 H  0 1 N N N 18.677 40.806 15.527 -6.890 0.103  0.240  H26 8R3 60 
8R3 H27 H27 H  0 1 N N N 18.631 38.227 15.116 -6.468 2.129  0.934  H27 8R3 61 
8R3 H28 H28 H  0 1 N N N 17.603 35.982 15.050 -5.708 4.415  0.431  H28 8R3 62 
8R3 H30 H30 H  0 1 N N N 21.793 36.955 20.508 -3.758 -2.372 0.590  H30 8R3 63 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
8R3 C8  C7  DOUB Y N 1  
8R3 C8  C9  SING Y N 2  
8R3 C7  C6  SING Y N 3  
8R3 C24 O23 SING N N 4  
8R3 CL2 C9  SING N N 5  
8R3 C9  C10 DOUB Y N 6  
8R3 C6  O23 SING N N 7  
8R3 C6  C5  DOUB Y N 8  
8R3 C10 C5  SING Y N 9  
8R3 C5  C4  SING N N 10 
8R3 C4  C3  SING N N 11 
8R3 C63 N62 SING N N 12 
8R3 C3  C11 SING N N 13 
8R3 C3  C1  SING N N 14 
8R3 C11 N12 SING N N 15 
8R3 N12 C13 SING N N 16 
8R3 N62 N14 SING N N 17 
8R3 N62 C68 SING N N 18 
8R3 C13 N14 DOUB N Z 19 
8R3 C13 C15 SING N N 20 
8R3 C15 N16 SING N N 21 
8R3 C1  N16 SING N N 22 
8R3 C1  O2  DOUB N N 23 
8R3 O33 C31 DOUB N N 24 
8R3 N16 C17 SING N N 25 
8R3 O30 C19 DOUB N N 26 
8R3 C31 O32 SING N N 27 
8R3 C31 C26 SING N N 28 
8R3 C19 C17 SING N N 29 
8R3 C19 N20 SING N N 30 
8R3 C25 C26 DOUB Y N 31 
8R3 C25 C21 SING Y N 32 
8R3 C26 C27 SING Y N 33 
8R3 N20 C21 SING N N 34 
8R3 C21 C29 DOUB Y N 35 
8R3 C27 C28 DOUB Y N 36 
8R3 C29 C28 SING Y N 37 
8R3 O32 H1  SING N N 38 
8R3 C25 H2  SING N N 39 
8R3 C27 H3  SING N N 40 
8R3 C28 H4  SING N N 41 
8R3 C29 H5  SING N N 42 
8R3 N20 H6  SING N N 43 
8R3 C17 H7  SING N N 44 
8R3 C17 H8  SING N N 45 
8R3 C15 H9  SING N N 46 
8R3 C15 H10 SING N N 47 
8R3 C68 H12 SING N N 48 
8R3 C68 H13 SING N N 49 
8R3 C68 H14 SING N N 50 
8R3 C63 H15 SING N N 51 
8R3 C63 H16 SING N N 52 
8R3 C63 H17 SING N N 53 
8R3 C11 H18 SING N N 54 
8R3 C11 H19 SING N N 55 
8R3 C3  H20 SING N N 56 
8R3 C4  H21 SING N N 57 
8R3 C4  H22 SING N N 58 
8R3 C10 H23 SING N N 59 
8R3 C24 H24 SING N N 60 
8R3 C24 H25 SING N N 61 
8R3 C24 H26 SING N N 62 
8R3 C7  H27 SING N N 63 
8R3 C8  H28 SING N N 64 
8R3 N12 H30 SING N N 65 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
8R3 InChI            InChI                1.03  "InChI=1S/C24H28ClN5O5/c1-29(2)28-21-13-30(14-22(31)27-19-6-4-5-15(11-19)24(33)34)23(32)17(12-26-21)9-16-10-18(25)7-8-20(16)35-3/h4-8,10-11,17H,9,12-14H2,1-3H3,(H,26,28)(H,27,31)(H,33,34)/t17-/m1/s1" 
8R3 InChIKey         InChI                1.03  STRUTOBZXDUGAL-QGZVFWFLSA-N                                                                                                                                                                             
8R3 SMILES_CANONICAL CACTVS               3.385 "COc1ccc(Cl)cc1C[C@@H]2CNC(/CN(CC(=O)Nc3cccc(c3)C(O)=O)C2=O)=N\N(C)C"                                                                                                                                   
8R3 SMILES           CACTVS               3.385 "COc1ccc(Cl)cc1C[CH]2CNC(CN(CC(=O)Nc3cccc(c3)C(O)=O)C2=O)=NN(C)C"                                                                                                                                       
8R3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CN(C)/N=C\1/CN(C(=O)[C@@H](CN1)Cc2cc(ccc2OC)Cl)CC(=O)Nc3cccc(c3)C(=O)O"                                                                                                                                
8R3 SMILES           "OpenEye OEToolkits" 2.0.6 "CN(C)N=C1CN(C(=O)C(CN1)Cc2cc(ccc2OC)Cl)CC(=O)Nc3cccc(c3)C(=O)O"                                                                                                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
8R3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "3-[2-[(3~{Z},6~{R})-6-[(5-chloranyl-2-methoxy-phenyl)methyl]-3-(dimethylhydrazinylidene)-7-oxidanylidene-1,4-diazepan-1-yl]ethanoylamino]benzoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
8R3 "Create component" 2017-08-29 PDBJ 
8R3 "Initial release"  2017-11-29 RCSB 
# 
