data_7K3
#

_chem_comp.id                                   7K3
_chem_comp.name                                 1-thio-alpha-D-mannopyranose
_chem_comp.type                                 "D-saccharide, alpha linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C6 H12 O5 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;(2~{R},3~{S},4~{S},5~{S},6~{R})-2-(hydroxymethyl)-6-sulfanyl-oxane-3,4,5-triol; 1-thio-alpha-D-mannose;
1-thio-D-mannose; 1-thio-mannose
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2016-11-03
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       196.221
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    7K3
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5M77
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  7K3  "(2~{R},3~{S},4~{S},5~{S},6~{R})-2-(hydroxymethyl)-6-sulfanyl-oxane-3,4,5-triol"  PDB  ?  
2  7K3  1-thio-alpha-D-mannose                                                            PDB  ?  
3  7K3  1-thio-D-mannose                                                                  PDB  ?  
4  7K3  1-thio-mannose                                                                    PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
7K3  C1   C7   C  0  1  N  N  R  7.330  -28.988  -2.596  -0.444  -1.442   0.556  C1   7K3   1  
7K3  C5   C9   C  0  1  N  N  R  5.652  -29.237  -0.857   1.106   0.279  -0.065  C5   7K3   2  
7K3  C2   C12  C  0  1  N  N  S  8.341  -29.760  -1.752  -1.618  -0.460   0.538  C2   7K3   3  
7K3  C6   C13  C  0  1  N  N  N  4.721  -28.364  -0.017   2.418   0.940   0.361  C6   7K3   4  
7K3  O2   O17  O  0  1  N  N  N  9.108  -28.772  -0.970  -1.782   0.111   1.838  O2   7K3   5  
7K3  C3   C11  C  0  1  N  N  S  7.630  -30.788  -0.844  -1.328   0.652  -0.476  C3   7K3   6  
7K3  O3   O16  O  0  1  N  N  N  8.637  -31.336  -0.023  -2.384   1.613  -0.446  O3   7K3   7  
7K3  C4   C10  C  0  1  N  N  S  6.575  -30.091   0.028  -0.005   1.331  -0.107  C4   7K3   8  
7K3  O4   O15  O  0  1  N  N  N  5.792  -31.008   0.808   0.312   2.322  -1.087  O4   7K3   9  
7K3  O6   O14  O  0  1  N  N  N  5.469  -27.464   0.845   3.478  -0.015   0.289  O6   7K3  10  
7K3  O5   O8   O  0  1  N  N  N  6.384  -28.340  -1.729   0.759  -0.740   0.875  O5   7K3  11  
7K3  S1   S1   S  0  1  N  N  N  6.541  -29.987  -3.865  -0.278  -2.216  -1.077  S1   7K3  12  
7K3  H1   H1   H  0  1  N  N  N  7.884  -28.216  -3.151  -0.626  -2.212   1.306  H1   7K3  13  
7K3  H5   H2   H  0  1  N  N  N  5.035  -29.915  -1.465   1.226  -0.163  -1.054  H5   7K3  14  
7K3  H2   H3   H  0  1  N  N  N  9.022  -30.301  -2.425  -2.529  -0.985   0.253  H2   7K3  15  
7K3  H61  H4   H  0  1  N  N  N  4.085  -27.769  -0.689   2.637   1.776  -0.303  H61  7K3  16  
7K3  H62  H5   H  0  1  N  N  N  4.088  -29.013   0.607   2.327   1.304   1.385  H62  7K3  17  
7K3  HO2  H6   H  0  1  N  Y  N  9.749  -29.222  -0.432  -1.964  -0.537   2.532  HO2  7K3  18  
7K3  H3   H7   H  0  1  N  N  N  7.149  -31.559  -1.464  -1.253   0.223  -1.475  H3   7K3  19  
7K3  HO3  H8   H  0  1  N  Y  N  8.254  -31.980   0.561  -3.253   1.250  -0.663  HO3  7K3  20  
7K3  H4   H9   H  0  1  N  N  N  7.105  -29.409   0.709  -0.098   1.803   0.871  H4   7K3  21  
7K3  HO4  H10  H  0  1  N  Y  N  6.367  -31.533   1.352  -0.350   3.021  -1.169  HO4  7K3  22  
7K3  HO6  H11  H  0  1  N  Y  N  4.864  -26.936   1.353   4.342   0.335   0.546  HO6  7K3  23  
7K3  H12  H12  H  0  1  N  N  N  5.747  -29.127  -4.431   0.772  -3.040  -0.915  H12  7K3  24  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
7K3  S1  C1   SING  N  N   1  
7K3  C1  C2   SING  N  N   2  
7K3  C1  O5   SING  N  N   3  
7K3  C2  O2   SING  N  N   4  
7K3  C2  C3   SING  N  N   5  
7K3  O5  C5   SING  N  N   6  
7K3  C5  C6   SING  N  N   7  
7K3  C5  C4   SING  N  N   8  
7K3  C3  O3   SING  N  N   9  
7K3  C3  C4   SING  N  N  10  
7K3  C6  O6   SING  N  N  11  
7K3  C4  O4   SING  N  N  12  
7K3  C1  H1   SING  N  N  13  
7K3  C5  H5   SING  N  N  14  
7K3  C2  H2   SING  N  N  15  
7K3  C6  H61  SING  N  N  16  
7K3  C6  H62  SING  N  N  17  
7K3  O2  HO2  SING  N  N  18  
7K3  C3  H3   SING  N  N  19  
7K3  O3  HO3  SING  N  N  20  
7K3  C4  H4   SING  N  N  21  
7K3  O4  HO4  SING  N  N  22  
7K3  O6  HO6  SING  N  N  23  
7K3  S1  H12  SING  N  N  24  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
7K3  InChI             InChI                 1.03   "InChI=1S/C6H12O5S/c7-1-2-3(8)4(9)5(10)6(12)11-2/h2-10,12H,1H2/t2-,3-,4+,5+,6-/m1/s1"  
7K3  InChIKey          InChI                 1.03   JUSMHIGDXPKSID-RWOPYEJCSA-N  
7K3  SMILES_CANONICAL  CACTVS                3.385  "OC[C@H]1O[C@H](S)[C@@H](O)[C@@H](O)[C@@H]1O"  
7K3  SMILES            CACTVS                3.385  "OC[CH]1O[CH](S)[CH](O)[CH](O)[CH]1O"  
7K3  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "C([C@@H]1[C@H]([C@@H]([C@@H]([C@H](O1)S)O)O)O)O"  
7K3  SMILES            "OpenEye OEToolkits"  2.0.6  "C(C1C(C(C(C(O1)S)O)O)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          7K3
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.6
_pdbx_chem_comp_identifier.identifier       "(2~{R},3~{S},4~{S},5~{S},6~{R})-2-(hydroxymethyl)-6-sulfanyl-oxane-3,4,5-triol"
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
7K3  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
7K3  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
7K3  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
7K3  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
7K3  "Other modification"        2016-11-03  EBI   
7K3  "Initial release"           2017-08-09  RCSB  
7K3  "Other modification"        2020-07-03  RCSB  
7K3  "Modify name"               2020-07-17  RCSB  
7K3  "Modify synonyms"           2020-07-17  RCSB  
7K3  "Modify internal type"      2020-07-17  RCSB  
7K3  "Modify linking type"       2020-07-17  RCSB  
7K3  "Modify atom id"            2020-07-17  RCSB  
7K3  "Modify component atom id"  2020-07-17  RCSB  
7K3  "Modify leaving atom flag"  2020-07-17  RCSB  
##
