data_6D3
# 
_chem_comp.id                                    6D3 
_chem_comp.name                                  
"(2S)-2-amino-4-[(3-{4-[(2S)-2-amino-2-carboxyethyl]-1H-1,2,3-triazol-1-yl}propyl){[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl}amino]butanoic acid (non-preferred name)" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H33 N11 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-03-16 
_chem_comp.pdbx_modified_date                    2017-03-10 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        563.567 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     6D3 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5IS9 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
6D3 O1  O    O 0 1 N N N 55.111 34.345 136.221 -1.026  -4.590 -0.304 O1  6D3 1  
6D3 C1  C    C 0 1 N N N 53.889 34.625 136.236 -0.233  -3.835 0.206  C1  6D3 2  
6D3 C2  CA   C 0 1 N N S 53.409 35.728 135.331 0.503   -2.831 -0.643 C2  6D3 3  
6D3 N1  N    N 0 1 N N N 54.387 36.729 135.298 0.469   -3.258 -2.048 N1  6D3 4  
6D3 C3  CB   C 0 1 N N N 53.209 35.182 133.915 -0.167  -1.462 -0.510 C3  6D3 5  
6D3 C4  CG   C 0 1 N N N 51.717 34.848 133.615 0.652   -0.417 -1.270 C4  6D3 6  
6D3 N2  NL   N 0 1 N N N 51.472 34.417 132.284 0.100   0.920  -1.013 N2  6D3 7  
6D3 C5  C5*  C 0 1 N N N 51.712 35.427 131.309 1.081   1.965  -1.336 C5  6D3 8  
6D3 C6  C4*  C 0 1 N N R 50.857 36.677 131.440 2.055   2.129  -0.167 C6  6D3 9  
6D3 O2  O4*  O 0 1 N N N 51.224 37.573 130.356 2.829   0.929  -0.004 O2  6D3 10 
6D3 C7  C1*  C 0 1 N N R 50.022 38.198 129.891 4.142   1.331  0.441  C7  6D3 11 
6D3 C8  C2*  C 0 1 N N R 48.965 37.175 130.059 4.435   2.601  -0.398 C8  6D3 12 
6D3 O3  O2*  O 0 1 N N N 47.705 37.795 130.242 5.378   3.445  0.266  O3  6D3 13 
6D3 C9  C3*  C 0 1 N N S 49.394 36.444 131.291 3.040   3.277  -0.463 C9  6D3 14 
6D3 O4  O3*  O 0 1 N N N 48.718 36.998 132.416 2.933   4.300  0.528  O4  6D3 15 
6D3 N3  N9   N 0 1 Y N N 50.249 38.603 128.552 5.126   0.285  0.153  N3  6D3 16 
6D3 C10 C8   C 0 1 Y N N 50.396 37.817 127.481 4.984   -0.731 -0.745 C10 6D3 17 
6D3 N4  N7   N 0 1 Y N N 50.616 38.560 126.385 6.050   -1.477 -0.745 N4  6D3 18 
6D3 C11 C5   C 0 1 Y N N 50.623 39.865 126.767 6.942   -0.989 0.150  C11 6D3 19 
6D3 C12 C6   C 0 1 Y N N 50.808 41.098 126.090 8.229   -1.366 0.569  C12 6D3 20 
6D3 N5  N6   N 0 1 N N N 51.041 41.118 124.717 8.853   -2.476 0.026  N5  6D3 21 
6D3 C13 C4   C 0 1 Y N N 50.395 39.900 128.158 6.362   0.151  0.733  C13 6D3 22 
6D3 N6  N3   N 0 1 Y N N 50.363 41.105 128.785 7.043   0.822  1.656  N6  6D3 23 
6D3 C14 C2   C 0 1 Y N N 50.538 42.239 128.110 8.245   0.428  2.020  C14 6D3 24 
6D3 N7  N1   N 0 1 Y N N 50.756 42.247 126.809 8.833   -0.633 1.498  N7  6D3 25 
6D3 O5  OXT  O 0 1 N N N 53.052 34.035 136.968 -0.011  -3.887 1.528  O5  6D3 26 
6D3 C15 CL1  C 0 1 N N N 52.309 33.263 131.986 -1.151  1.125  -1.755 C15 6D3 27 
6D3 C16 CL2  C 0 1 N N N 51.629 32.328 130.969 -2.332  0.656  -0.903 C16 6D3 28 
6D3 C17 CL3  C 0 1 N N N 52.612 31.425 130.217 -3.641  0.969  -1.630 C17 6D3 29 
6D3 N8  NL4  N 0 1 Y N N 52.167 30.007 130.194 -4.772  0.521  -0.813 N8  6D3 30 
6D3 C18 CL5  C 0 1 Y N N 52.305 29.159 129.145 -5.816  1.285  -0.417 C18 6D3 31 
6D3 C19 CL6  C 0 1 Y N N 51.735 27.887 129.543 -6.620  0.476  0.312  C19 6D3 32 
6D3 N9  NL61 N 0 1 Y N N 51.307 28.073 130.819 -6.036  -0.728 0.326  N9  6D3 33 
6D3 N10 NL41 N 0 1 Y N N 51.568 29.325 131.164 -4.946  -0.669 -0.354 N10 6D3 34 
6D3 C20 CL7  C 0 1 N N N 51.669 26.596 128.701 -7.918  0.857  0.977  C20 6D3 35 
6D3 C21 CL8  C 0 1 N N S 50.375 26.316 127.974 -9.028  -0.085 0.506  C21 6D3 36 
6D3 N11 NL8  N 0 1 N N N 50.322 26.964 126.703 -9.257  0.109  -0.932 N11 6D3 37 
6D3 C22 CL9  C 0 1 N N N 49.207 26.743 128.878 -10.296 0.216  1.262  C22 6D3 38 
6D3 O6  OL91 O 0 1 N N N 48.237 27.400 128.376 -11.161 0.887  0.749  O6  6D3 39 
6D3 O7  OL92 O 0 1 N N N 49.267 26.398 130.127 -10.466 -0.261 2.505  O7  6D3 40 
6D3 H1  HA   H 0 1 N N N 52.453 36.121 135.706 1.539   -2.763 -0.309 H1  6D3 41 
6D3 H2  H    H 0 1 N N N 54.524 37.092 136.220 0.962   -4.129 -2.174 H2  6D3 42 
6D3 H3  H2   H 0 1 N N N 55.246 36.345 134.960 -0.481  -3.329 -2.381 H3  6D3 43 
6D3 H5  HB2  H 0 1 N N N 53.806 34.265 133.802 -1.173  -1.508 -0.925 H5  6D3 44 
6D3 H6  HB3  H 0 1 N N N 53.555 35.936 133.193 -0.221  -1.185 0.543  H6  6D3 45 
6D3 H7  HG2  H 0 1 N N N 51.117 35.751 133.801 1.689   -0.453 -0.935 H7  6D3 46 
6D3 H8  HG3  H 0 1 N N N 51.398 34.049 134.300 0.609   -0.629 -2.339 H8  6D3 47 
6D3 H10 H5*2 H 0 1 N N N 51.526 34.991 130.316 1.633   1.682  -2.232 H10 6D3 48 
6D3 H11 H5*1 H 0 1 N N N 52.767 35.728 131.385 0.562   2.908  -1.511 H11 6D3 49 
6D3 H12 H4*1 H 0 1 N N N 51.059 37.154 132.411 1.503   2.341  0.748  H12 6D3 50 
6D3 H13 H1*1 H 0 1 N N N 49.786 39.071 130.517 4.132   1.568  1.505  H13 6D3 51 
6D3 H14 H2*1 H 0 1 N N N 48.953 36.491 129.197 4.787   2.336  -1.395 H14 6D3 52 
6D3 H15 H2*2 H 0 1 N N N 47.036 37.129 130.348 5.593   4.253  -0.220 H15 6D3 53 
6D3 H16 H3*1 H 0 1 N N N 49.186 35.369 131.188 2.860   3.686  -1.457 H16 6D3 54 
6D3 H17 H3*2 H 0 1 N N N 48.985 36.539 133.204 3.572   5.018  0.422  H17 6D3 55 
6D3 H18 H81  H 0 1 N N N 50.345 36.738 127.495 4.114   -0.893 -1.365 H18 6D3 56 
6D3 H19 H62  H 0 1 N N N 51.150 42.064 124.411 8.402   -3.003 -0.652 H19 6D3 57 
6D3 H20 H61  H 0 1 N N N 51.874 40.604 124.513 9.742   -2.726 0.324  H20 6D3 58 
6D3 H21 H21  H 0 1 N N N 50.500 43.178 128.642 8.772   0.997  2.773  H21 6D3 59 
6D3 H22 H3   H 0 1 N N N 53.494 33.370 137.483 -0.510  -4.545 2.032  H22 6D3 60 
6D3 H23 HL12 H 0 1 N N N 52.496 32.706 132.916 -1.267  2.183  -1.987 H23 6D3 61 
6D3 H24 HL11 H 0 1 N N N 53.265 33.612 131.569 -1.122  0.551  -2.682 H24 6D3 62 
6D3 H25 HL22 H 0 1 N N N 51.091 32.945 130.234 -2.256  -0.418 -0.736 H25 6D3 63 
6D3 H26 HL21 H 0 1 N N N 50.912 31.690 131.507 -2.316  1.175  0.056  H26 6D3 64 
6D3 H27 HL31 H 0 1 N N N 53.593 31.480 130.711 -3.717  2.043  -1.796 H27 6D3 65 
6D3 H28 HL32 H 0 1 N N N 52.702 31.785 129.181 -3.657  0.450  -2.588 H28 6D3 66 
6D3 H29 HL51 H 0 1 N N N 52.756 29.389 128.191 -5.976  2.330  -0.638 H29 6D3 67 
6D3 H30 HL72 H 0 1 N N N 51.860 25.749 129.377 -7.808  0.777  2.059  H30 6D3 68 
6D3 H31 HL71 H 0 1 N N N 52.468 26.651 127.947 -8.175  1.882  0.713  H31 6D3 69 
6D3 H32 HL81 H 0 1 N N N 50.299 25.229 127.825 -8.731  -1.117 0.691  H32 6D3 70 
6D3 H33 HL83 H 0 1 N N N 49.452 26.753 126.257 -9.941  -0.546 -1.281 H33 6D3 71 
6D3 H34 HL82 H 0 1 N N N 50.401 27.953 126.830 -9.533  1.059  -1.129 H34 6D3 72 
6D3 H36 H4   H 0 1 N N N 48.492 26.710 130.580 -11.296 -0.041 2.950  H36 6D3 73 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
6D3 N5  C12 SING N N 1  
6D3 C12 C11 DOUB Y N 2  
6D3 C12 N7  SING Y N 3  
6D3 N4  C11 SING Y N 4  
6D3 N4  C10 DOUB Y N 5  
6D3 N11 C21 SING N N 6  
6D3 C11 C13 SING Y N 7  
6D3 N7  C14 DOUB Y N 8  
6D3 C10 N3  SING Y N 9  
6D3 C21 C20 SING N N 10 
6D3 C21 C22 SING N N 11 
6D3 C14 N6  SING Y N 12 
6D3 C13 N3  SING Y N 13 
6D3 C13 N6  DOUB Y N 14 
6D3 O6  C22 DOUB N N 15 
6D3 N3  C7  SING N N 16 
6D3 C20 C19 SING N N 17 
6D3 C22 O7  SING N N 18 
6D3 C18 C19 DOUB Y N 19 
6D3 C18 N8  SING Y N 20 
6D3 C19 N9  SING Y N 21 
6D3 C7  C8  SING N N 22 
6D3 C7  O2  SING N N 23 
6D3 C8  O3  SING N N 24 
6D3 C8  C9  SING N N 25 
6D3 N8  C17 SING N N 26 
6D3 N8  N10 SING Y N 27 
6D3 C17 C16 SING N N 28 
6D3 O2  C6  SING N N 29 
6D3 N9  N10 DOUB Y N 30 
6D3 C16 C15 SING N N 31 
6D3 C9  C6  SING N N 32 
6D3 C9  O4  SING N N 33 
6D3 C5  C6  SING N N 34 
6D3 C5  N2  SING N N 35 
6D3 C15 N2  SING N N 36 
6D3 N2  C4  SING N N 37 
6D3 C4  C3  SING N N 38 
6D3 C3  C2  SING N N 39 
6D3 N1  C2  SING N N 40 
6D3 C2  C1  SING N N 41 
6D3 O1  C1  DOUB N N 42 
6D3 C1  O5  SING N N 43 
6D3 C2  H1  SING N N 44 
6D3 N1  H2  SING N N 45 
6D3 N1  H3  SING N N 46 
6D3 C3  H5  SING N N 47 
6D3 C3  H6  SING N N 48 
6D3 C4  H7  SING N N 49 
6D3 C4  H8  SING N N 50 
6D3 C5  H10 SING N N 51 
6D3 C5  H11 SING N N 52 
6D3 C6  H12 SING N N 53 
6D3 C7  H13 SING N N 54 
6D3 C8  H14 SING N N 55 
6D3 O3  H15 SING N N 56 
6D3 C9  H16 SING N N 57 
6D3 O4  H17 SING N N 58 
6D3 C10 H18 SING N N 59 
6D3 N5  H19 SING N N 60 
6D3 N5  H20 SING N N 61 
6D3 C14 H21 SING N N 62 
6D3 O5  H22 SING N N 63 
6D3 C15 H23 SING N N 64 
6D3 C15 H24 SING N N 65 
6D3 C16 H25 SING N N 66 
6D3 C16 H26 SING N N 67 
6D3 C17 H27 SING N N 68 
6D3 C17 H28 SING N N 69 
6D3 C18 H29 SING N N 70 
6D3 C20 H30 SING N N 71 
6D3 C20 H31 SING N N 72 
6D3 C21 H32 SING N N 73 
6D3 N11 H33 SING N N 74 
6D3 N11 H34 SING N N 75 
6D3 O7  H36 SING N N 76 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
6D3 SMILES           ACDLabs              12.01 "O=C(O)C(N)CCN(CC1OC(C(O)C1O)n2cnc3c2ncnc3N)CCCn4nnc(c4)CC(C(O)=O)N" 
6D3 InChI            InChI                1.03  
"InChI=1S/C22H33N11O7/c23-12(21(36)37)2-5-31(3-1-4-32-7-11(29-30-32)6-13(24)22(38)39)8-14-16(34)17(35)20(40-14)33-10-28-15-18(25)26-9-27-19(15)33/h7,9-10,12-14,16-17,20,34-35H,1-6,8,23-24H2,(H,36,37)(H,38,39)(H2,25,26,27)/t12-,13-,14+,16+,17+,20+/m0/s1" 
6D3 InChIKey         InChI                1.03  ADSMXCDKXYTNGH-WPWKUSFZSA-N 
6D3 SMILES_CANONICAL CACTVS               3.385 "N[C@@H](CCN(CCCn1cc(C[C@H](N)C(O)=O)nn1)C[C@H]2O[C@H]([C@H](O)[C@@H]2O)n3cnc4c(N)ncnc34)C(O)=O" 
6D3 SMILES           CACTVS               3.385 "N[CH](CCN(CCCn1cc(C[CH](N)C(O)=O)nn1)C[CH]2O[CH]([CH](O)[CH]2O)n3cnc4c(N)ncnc34)C(O)=O" 
6D3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "c1c(nnn1CCCN(CC[C@@H](C(=O)O)N)C[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O)C[C@@H](C(=O)O)N" 
6D3 SMILES           "OpenEye OEToolkits" 2.0.4 "c1c(nnn1CCCN(CCC(C(=O)O)N)CC2C(C(C(O2)n3cnc4c3ncnc4N)O)O)CC(C(=O)O)N" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
6D3 "SYSTEMATIC NAME" ACDLabs              12.01 
"(2S)-2-amino-4-[(3-{4-[(2S)-2-amino-2-carboxyethyl]-1H-1,2,3-triazol-1-yl}propyl){[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl}amino]butanoic acid (non-preferred name)"       
6D3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 
"(2~{S})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[3-[4-[(2~{S})-2-azanyl-3-oxidanyl-3-oxidanylidene-propyl]-1,2,3-triazol-1-yl]propyl]amino]-2-azanyl-butanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
6D3 "Create component" 2016-03-16 EBI  
6D3 "Initial release"  2017-03-15 RCSB 
# 
