data_5D3
# 
_chem_comp.id                                    5D3 
_chem_comp.name                                  "10-(4-ethylphenyl)sulfonyl-~{N}-(thiophen-2-ylmethyl)-5-thia-1,8,11,12-tetrazatricyclo[7.3.0.0^{2,6}]dodeca-2(6),3,7,9,11-pentaen-7-amine" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H17 N5 O2 S3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-07-08 
_chem_comp.pdbx_modified_date                    2023-09-29 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        455.576 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     5D3 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7P2A 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5D3 CAA C1  C 0 1 Y N N 117.390 138.232 112.988 -3.333 -0.435 -0.529 CAA 5D3 1  
5D3 CAB C2  C 0 1 Y N N 117.881 138.930 114.082 -4.614 -0.034 -0.197 CAB 5D3 2  
5D3 CAC C3  C 0 1 Y N N 119.033 139.691 113.971 -5.318 -0.709 0.783  CAC 5D3 3  
5D3 CAD C4  C 0 1 Y N N 119.706 139.750 112.760 -4.741 -1.785 1.431  CAD 5D3 4  
5D3 CAE C5  C 0 1 Y N N 119.217 139.049 111.664 -3.460 -2.186 1.099  CAE 5D3 5  
5D3 CAF C6  C 0 1 Y N N 118.062 138.282 111.775 -2.756 -1.511 0.120  CAF 5D3 6  
5D3 CAG C7  C 0 1 N N N 120.863 140.512 112.638 -5.507 -2.520 2.500  CAG 5D3 7  
5D3 CAH C8  C 0 1 N N N 121.461 140.794 114.019 -6.306 -3.659 1.863  CAH 5D3 8  
5D3 CAK C9  C 0 1 Y N N 114.705 137.752 112.065 -1.547 1.719  -0.994 CAK 5D3 9  
5D3 CAM C10 C 0 1 Y N N 113.688 138.539 112.335 -0.265 1.625  -0.481 CAM 5D3 10 
5D3 CAR C11 C 0 1 Y N N 112.115 139.859 113.346 1.806  0.796  0.137  CAR 5D3 11 
5D3 CAS C12 C 0 1 Y N N 111.455 139.989 112.198 2.167  2.055  0.681  CAS 5D3 12 
5D3 CAT C13 C 0 1 Y N N 111.891 139.361 111.094 1.265  3.103  0.626  CAT 5D3 13 
5D3 CAV C14 C 0 1 Y N N 110.038 140.336 110.235 2.987  4.205  1.695  CAV 5D3 14 
5D3 CAW C15 C 0 1 Y N N 111.104 139.560 110.021 1.756  4.275  1.198  CAW 5D3 15 
5D3 CAY C16 C 0 1 N N N 112.425 140.544 115.638 2.336  -1.559 -0.373 CAY 5D3 16 
5D3 CAZ C17 C 0 1 Y N N 111.870 139.601 116.689 3.479  -2.525 -0.191 CAZ 5D3 17 
5D3 CBA C18 C 0 1 Y N N 111.587 139.936 117.946 3.655  -3.318 0.867  CBA 5D3 18 
5D3 CBB C19 C 0 1 Y N N 111.121 138.908 118.672 4.780  -4.122 0.813  CBB 5D3 19 
5D3 CBC C20 C 0 1 Y N N 111.043 137.767 117.986 5.518  -3.983 -0.290 CBC 5D3 20 
5D3 NAN N1  N 0 1 Y N N 113.009 138.650 111.208 0.029  2.859  0.028  NAN 5D3 21 
5D3 NAO N2  N 0 1 Y N N 113.596 137.990 110.321 -1.094 3.663  -0.197 NAO 5D3 22 
5D3 NAP N3  N 0 1 Y N N 114.643 137.451 110.778 -1.988 2.955  -0.796 NAP 5D3 23 
5D3 NAQ N4  N 0 1 Y N N 113.260 139.176 113.425 0.625  0.622  -0.417 NAQ 5D3 24 
5D3 NAX N5  N 0 1 N N N 111.661 140.540 114.387 2.703  -0.257 0.188  NAX 5D3 25 
5D3 OAJ O1  O 0 1 N N N 116.279 135.828 113.021 -1.467 -0.492 -2.276 OAJ 5D3 26 
5D3 OAL O2  O 0 1 N N N 115.418 137.519 114.617 -3.409 1.046  -2.612 OAL 5D3 27 
5D3 SAI S1  S 0 1 N N N 115.946 137.303 113.204 -2.439 0.420  -1.783 SAI 5D3 28 
5D3 SAU S2  S 0 1 Y N N 110.096 140.778 111.815 3.644  2.592  1.471  SAU 5D3 29 
5D3 SBD S3  S 0 1 Y N N 111.569 138.087 116.448 4.782  -2.783 -1.344 SBD 5D3 30 
5D3 H1  H1  H 0 1 N N N 117.361 138.880 115.027 -5.065 0.806  -0.704 H1  5D3 31 
5D3 H2  H2  H 0 1 N N N 119.406 140.237 114.825 -6.318 -0.395 1.042  H2  5D3 32 
5D3 H3  H3  H 0 1 N N N 119.738 139.100 110.719 -3.009 -3.026 1.606  H3  5D3 33 
5D3 H4  H4  H 0 1 N N N 117.691 137.730 110.924 -1.755 -1.824 -0.139 H4  5D3 34 
5D3 H11 H11 H 0 1 N N N 109.287 140.617 109.512 3.508  5.024  2.169  H11 5D3 35 
5D3 H13 H13 H 0 1 N N N 111.319 139.124 109.057 1.173  5.183  1.234  H13 5D3 36 
5D3 H14 H14 H 0 1 N N N 112.417 141.565 116.047 2.119  -1.450 -1.436 H14 5D3 37 
5D3 H15 H15 H 0 1 N N N 113.460 140.246 115.415 1.454  -1.941 0.141  H15 5D3 38 
5D3 H17 H17 H 0 1 N N N 111.719 140.933 118.341 2.971  -3.331 1.703  H17 5D3 39 
5D3 H18 H18 H 0 1 N N N 110.837 138.996 119.710 5.041  -4.811 1.603  H18 5D3 40 
5D3 H20 H20 H 0 1 N N N 110.701 136.814 118.362 6.427  -4.525 -0.503 H20 5D3 41 
5D3 H22 H22 H 0 1 N N N 111.575 141.493 114.096 3.575  -0.132 0.595  H22 5D3 42 
5D3 H5  H5  H 0 1 N N N 121.597 139.963 112.030 -4.810 -2.929 3.231  H5  5D3 43 
5D3 H6  H6  H 0 1 N N N 120.620 141.465 112.146 -6.191 -1.830 2.996  H6  5D3 44 
5D3 H7  H7  H 0 1 N N N 122.374 141.397 113.907 -5.622 -4.348 1.367  H7  5D3 45 
5D3 H8  H8  H 0 1 N N N 120.730 141.345 114.629 -6.860 -4.191 2.637  H8  5D3 46 
5D3 H9  H9  H 0 1 N N N 121.708 139.843 114.513 -7.003 -3.250 1.132  H9  5D3 47 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5D3 CAA CAB DOUB Y N 1  
5D3 CAA CAF SING Y N 2  
5D3 CAA SAI SING N N 3  
5D3 CAB CAC SING Y N 4  
5D3 CAC CAD DOUB Y N 5  
5D3 CAD CAE SING Y N 6  
5D3 CAD CAG SING N N 7  
5D3 CAE CAF DOUB Y N 8  
5D3 CAG CAH SING N N 9  
5D3 CAK CAM DOUB Y N 10 
5D3 CAK NAP SING Y N 11 
5D3 CAK SAI SING N N 12 
5D3 CAM NAN SING Y N 13 
5D3 CAM NAQ SING Y N 14 
5D3 CAR CAS SING Y N 15 
5D3 CAR NAQ DOUB Y N 16 
5D3 CAR NAX SING N N 17 
5D3 CAS CAT DOUB Y N 18 
5D3 CAS SAU SING Y N 19 
5D3 CAT CAW SING Y N 20 
5D3 CAT NAN SING Y N 21 
5D3 CAV CAW DOUB Y N 22 
5D3 CAV SAU SING Y N 23 
5D3 CAY CAZ SING N N 24 
5D3 CAY NAX SING N N 25 
5D3 CAZ CBA DOUB Y N 26 
5D3 CAZ SBD SING Y N 27 
5D3 CBA CBB SING Y N 28 
5D3 CBB CBC DOUB Y N 29 
5D3 CBC SBD SING Y N 30 
5D3 NAN NAO SING Y N 31 
5D3 NAO NAP DOUB Y N 32 
5D3 OAJ SAI DOUB N N 33 
5D3 OAL SAI DOUB N N 34 
5D3 CAB H1  SING N N 35 
5D3 CAC H2  SING N N 36 
5D3 CAE H3  SING N N 37 
5D3 CAF H4  SING N N 38 
5D3 CAV H11 SING N N 39 
5D3 CAW H13 SING N N 40 
5D3 CAY H14 SING N N 41 
5D3 CAY H15 SING N N 42 
5D3 CBA H17 SING N N 43 
5D3 CBB H18 SING N N 44 
5D3 CBC H20 SING N N 45 
5D3 NAX H22 SING N N 46 
5D3 CAG H5  SING N N 47 
5D3 CAG H6  SING N N 48 
5D3 CAH H7  SING N N 49 
5D3 CAH H8  SING N N 50 
5D3 CAH H9  SING N N 51 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5D3 InChI            InChI                1.03  "InChI=1S/C20H17N5O2S3/c1-2-13-5-7-15(8-6-13)30(26,27)20-19-22-18(21-12-14-4-3-10-28-14)17-16(9-11-29-17)25(19)24-23-20/h3-11H,2,12H2,1H3,(H,21,22)" 
5D3 InChIKey         InChI                1.03  UYFZCWXRMHSLTC-UHFFFAOYSA-N                                                                                                                          
5D3 SMILES_CANONICAL CACTVS               3.385 "CCc1ccc(cc1)[S](=O)(=O)c2nnn3c4ccsc4c(NCc5sccc5)nc23"                                                                                               
5D3 SMILES           CACTVS               3.385 "CCc1ccc(cc1)[S](=O)(=O)c2nnn3c4ccsc4c(NCc5sccc5)nc23"                                                                                               
5D3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCc1ccc(cc1)S(=O)(=O)c2c3nc(c4c(n3nn2)ccs4)NCc5cccs5"                                                                                               
5D3 SMILES           "OpenEye OEToolkits" 2.0.7 "CCc1ccc(cc1)S(=O)(=O)c2c3nc(c4c(n3nn2)ccs4)NCc5cccs5"                                                                                               
# 
_pdbx_chem_comp_identifier.comp_id           5D3 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "10-(4-ethylphenyl)sulfonyl-~{N}-(thiophen-2-ylmethyl)-5-thia-1,8,11,12-tetrazatricyclo[7.3.0.0^{2,6}]dodeca-2(6),3,7,9,11-pentaen-7-amine" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5D3 "Create component" 2021-07-08 PDBE 
5D3 "Initial release"  2023-10-04 RCSB 
# 
