data_3V3
# 
_chem_comp.id                                    3V3 
_chem_comp.name                                  "1-amino-3,6,9,12-tetraoxapentadecan-15-oic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C11 H23 N O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-11-09 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        265.303 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     3V3 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4WVP 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
3V3 C1  C1  C 0 1 N N N Y N N -48.872 112.373 -6.857 6.284  1.178  1.517  C1  3V3 1  
3V3 C2  C2  C 0 1 N N N Y N N -49.011 113.711 -6.145 5.317  1.817  0.519  C2  3V3 2  
3V3 C4  C4  C 0 1 N N N Y N N -47.939 115.016 -4.477 3.689  1.285  -1.158 C4  3V3 3  
3V3 O3  O3  O 0 1 N N N Y N N -48.194 113.695 -4.967 4.623  0.792  -0.195 O3  3V3 4  
3V3 C5  C5  C 0 1 N N N Y N N -47.136 114.900 -3.216 3.009  0.106  -1.859 C5  3V3 5  
3V3 C7  C7  C 0 1 N N N Y N N -44.948 114.274 -2.542 1.546  -1.751 -1.466 C7  3V3 6  
3V3 C8  C8  C 0 1 N N N Y N N -43.731 113.412 -2.844 0.744  -2.453 -0.369 C8  3V3 7  
3V3 C10 C10 C 0 1 N N N Y N N -44.256 111.351 -1.653 -1.100 -2.144 1.132  C10 3V3 8  
3V3 O6  O6  O 0 1 N N N Y N N -45.944 114.212 -3.554 2.227  -0.623 -0.912 O6  3V3 9  
3V3 C11 C11 C 0 1 N N N Y N N -42.993 110.796 -1.093 -2.164 -1.129 1.554  C11 3V3 10 
3V3 C13 C13 C 0 1 N N N Y N N -41.224 109.378 -1.684 -4.091 0.049  0.751  C13 3V3 11 
3V3 C14 C14 C 0 1 N N N Y N N -40.794 108.354 -2.700 -4.978 0.227  -0.483 C14 3V3 12 
3V3 C   C15 C 0 1 N N N Y N Y -41.665 107.128 -2.619 -6.072 1.217  -0.177 C15 3V3 13 
3V3 N   N1  N 0 1 N N N Y Y N -47.550 112.244 -7.545 7.325  0.441  0.787  N1  3V3 14 
3V3 O9  O9  O 0 1 N N N Y N N -44.015 112.016 -2.895 -0.287 -1.581 0.099  O9  3V3 15 
3V3 O12 O12 O 0 1 N N N Y N N -42.525 109.795 -2.004 -3.053 -0.889 0.461  O12 3V3 16 
3V3 O   O16 O 0 1 N N N Y N Y -41.838 106.622 -1.517 -6.136 1.728  0.916  O16 3V3 17 
3V3 H1  H1  H 0 1 N N N Y N N -49.673 112.283 -7.605 6.748  1.956  2.123  H1  3V3 18 
3V3 H22 H2  H 0 1 N N N Y N N -48.969 111.564 -6.117 5.738  0.490  2.164  H2  3V3 19 
3V3 H3  H3  H 0 1 N N N Y N N -48.681 114.521 -6.812 4.597  2.436  1.056  H3  3V3 20 
3V3 H4  H4  H 0 1 N N N Y N N -50.062 113.873 -5.864 5.875  2.435  -0.183 H4  3V3 21 
3V3 H5  H5  H 0 1 N N N Y N N -47.374 115.589 -5.227 2.936  1.892  -0.656 H5  3V3 22 
3V3 H6  H6  H 0 1 N N N Y N N -48.891 115.526 -4.267 4.214  1.892  -1.895 H6  3V3 23 
3V3 H7  H7  H 0 1 N N N Y N N -46.898 115.900 -2.825 2.363  0.480  -2.653 H7  3V3 24 
3V3 H8  H8  H 0 1 N N N Y N N -47.699 114.334 -2.459 3.768  -0.550 -2.285 H8  3V3 25 
3V3 H9  H9  H 0 1 N N N Y N N -44.619 115.319 -2.439 2.274  -2.445 -1.885 H9  3V3 26 
3V3 H10 H10 H 0 1 N N N Y N N -45.391 113.934 -1.594 0.869  -1.416 -2.253 H10 3V3 27 
3V3 H11 H11 H 0 1 N N N Y N N -42.980 113.585 -2.059 0.296  -3.362 -0.771 H11 3V3 28 
3V3 H12 H12 H 0 1 N N N Y N N -43.321 113.719 -3.818 1.406  -2.709 0.458  H12 3V3 29 
3V3 H13 H13 H 0 1 N N N Y N N -44.682 112.069 -0.937 -0.475 -2.393 1.990  H13 3V3 30 
3V3 H14 H14 H 0 1 N N N Y N N -44.969 110.529 -1.817 -1.585 -3.046 0.761  H14 3V3 31 
3V3 H15 H15 H 0 1 N N N Y N N -43.184 110.347 -0.107 -2.726 -1.522 2.400  H15 3V3 32 
3V3 H16 H16 H 0 1 N N N Y N N -42.243 111.594 -0.994 -1.681 -0.194 1.840  H16 3V3 33 
3V3 H17 H17 H 0 1 N N N Y N N -41.213 108.932 -0.678 -3.648 1.008  1.021  H17 3V3 34 
3V3 H18 H18 H 0 1 N N N Y N N -40.540 110.239 -1.711 -4.693 -0.320 1.581  H18 3V3 35 
3V3 H19 H19 H 0 1 N N N Y N N -39.750 108.069 -2.506 -4.376 0.596  -1.313 H19 3V3 36 
3V3 H20 H20 H 0 1 N N N Y N N -40.874 108.788 -3.707 -5.420 -0.732 -0.753 H20 3V3 37 
3V3 OXT O1  O 0 1 N Y N Y N Y -42.102 106.727 -3.464 -6.976 1.531  -1.119 O1  3V3 38 
3V3 H   H22 H 0 1 N N N Y Y N -47.496 111.355 -8.000 7.802  1.043  0.133  H22 3V3 39 
3V3 H2  H23 H 0 1 N Y N Y Y N -47.455 112.972 -8.224 7.977  0.009  1.424  H23 3V3 40 
3V3 HXT H21 H 0 1 N Y N Y N Y -42.612 105.962 -3.225 -7.659 2.171  -0.876 H21 3V3 41 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
3V3 N   C1  SING N N 1  
3V3 C1  C2  SING N N 2  
3V3 C2  O3  SING N N 3  
3V3 O3  C4  SING N N 4  
3V3 C4  C5  SING N N 5  
3V3 O6  C5  SING N N 6  
3V3 O6  C7  SING N N 7  
3V3 O9  C8  SING N N 8  
3V3 O9  C10 SING N N 9  
3V3 C8  C7  SING N N 10 
3V3 C14 C   SING N N 11 
3V3 C14 C13 SING N N 12 
3V3 C   O   DOUB N N 13 
3V3 O12 C13 SING N N 14 
3V3 O12 C11 SING N N 15 
3V3 C10 C11 SING N N 16 
3V3 C1  H1  SING N N 17 
3V3 C1  H22 SING N N 18 
3V3 C2  H3  SING N N 19 
3V3 C2  H4  SING N N 20 
3V3 C4  H5  SING N N 21 
3V3 C4  H6  SING N N 22 
3V3 C5  H7  SING N N 23 
3V3 C5  H8  SING N N 24 
3V3 C7  H9  SING N N 25 
3V3 C7  H10 SING N N 26 
3V3 C8  H11 SING N N 27 
3V3 C8  H12 SING N N 28 
3V3 C10 H13 SING N N 29 
3V3 C10 H14 SING N N 30 
3V3 C11 H15 SING N N 31 
3V3 C11 H16 SING N N 32 
3V3 C13 H17 SING N N 33 
3V3 C13 H18 SING N N 34 
3V3 C14 H19 SING N N 35 
3V3 C14 H20 SING N N 36 
3V3 C   OXT SING N N 37 
3V3 N   H   SING N N 38 
3V3 N   H2  SING N N 39 
3V3 OXT HXT SING N N 40 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
3V3 SMILES           ACDLabs              12.01 "O=C(O)CCOCCOCCOCCOCCN"                                                                 
3V3 InChI            InChI                1.03  "InChI=1S/C11H23NO6/c12-2-4-16-6-8-18-10-9-17-7-5-15-3-1-11(13)14/h1-10,12H2,(H,13,14)" 
3V3 InChIKey         InChI                1.03  DKUZHSDZSMQOGQ-UHFFFAOYSA-N                                                             
3V3 SMILES_CANONICAL CACTVS               3.385 "NCCOCCOCCOCCOCCC(O)=O"                                                                 
3V3 SMILES           CACTVS               3.385 "NCCOCCOCCOCCOCCC(O)=O"                                                                 
3V3 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "C(COCCOCCOCCOCCN)C(=O)O"                                                               
3V3 SMILES           "OpenEye OEToolkits" 1.9.2 "C(COCCOCCOCCOCCN)C(=O)O"                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
3V3 "SYSTEMATIC NAME" ACDLabs              12.01 "1-amino-3,6,9,12-tetraoxapentadecan-15-oic acid"                
3V3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "3-[2-[2-[2-(2-azanylethoxy)ethoxy]ethoxy]ethoxy]propanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
3V3 "Create component" 2014-11-09 RCSB 
3V3 "Initial release"  2015-02-11 RCSB 
3V3 "Modify backbone"  2023-11-03 PDBE 
3V3 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            3V3 
_pdbx_chem_comp_pcm.modified_residue_id                ? 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Non-standard residue" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain and backbone" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
