data_3K3
# 
_chem_comp.id                                    3K3 
_chem_comp.name                                  "5-({(1R,1aS,6bR)-1-[5-(trifluoromethyl)-1H-benzimidazol-2-yl]-1a,6b-dihydro-1H-cyclopropa[b][1]benzofuran-5-yl}oxy)-3,4-dihydro-1,8-naphthyridin-2(1H)-one" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H17 F3 N4 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-08-28 
_chem_comp.pdbx_modified_date                    2016-02-19 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        478.423 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     3K3 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4R5Y 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
3K3 F2  F2  F 0 1 N N N 17.744 -12.948 -17.473 -6.985 3.398  -0.490 F2  3K3 1  
3K3 C19 C19 C 0 1 N N N 18.371 -12.274 -18.428 -7.688 2.236  -0.154 C19 3K3 2  
3K3 F   F   F 0 1 N N N 17.809 -12.506 -19.607 -8.441 2.464  1.003  F   3K3 3  
3K3 F1  F1  F 0 1 N N N 18.257 -10.983 -18.158 -8.542 1.888  -1.206 F1  3K3 4  
3K3 C18 C18 C 0 1 Y N N 19.836 -12.654 -18.419 -6.713 1.113  0.094  C18 3K3 5  
3K3 C17 C17 C 0 1 Y N N 20.333 -13.765 -19.102 -7.040 0.105  0.990  C17 3K3 6  
3K3 C16 C16 C 0 1 Y N N 21.692 -14.068 -19.056 -6.161 -0.929 1.229  C16 3K3 7  
3K3 C20 C20 C 0 1 Y N N 20.714 -11.849 -17.700 -5.520 1.095  -0.571 C20 3K3 8  
3K3 C21 C21 C 0 1 Y N N 22.069 -12.151 -17.647 -4.613 0.056  -0.345 C21 3K3 9  
3K3 C15 C15 C 0 1 Y N N 22.559 -13.258 -18.327 -4.941 -0.962 0.567  C15 3K3 10 
3K3 N   N   N 0 1 Y N N 23.897 -13.298 -18.102 -3.865 -1.827 0.576  N   3K3 11 
3K3 N1  N1  N 0 1 Y N N 23.110 -11.555 -17.036 -3.381 -0.235 -0.836 N1  3K3 12 
3K3 C14 C14 C 0 1 Y N N 24.237 -12.251 -17.303 -2.942 -1.333 -0.292 C14 3K3 13 
3K3 C13 C13 C 0 1 N N R 25.603 -11.895 -16.809 -1.609 -1.969 -0.589 C13 3K3 14 
3K3 C9  C9  C 0 1 N N S 26.710 -12.550 -17.644 -1.103 -3.035 0.385  C9  3K3 15 
3K3 O2  O2  O 0 1 N N N 28.009 -11.947 -17.451 -0.087 -3.942 -0.043 O2  3K3 16 
3K3 C10 C10 C 0 1 N N R 26.347 -13.111 -16.261 -0.446 -1.644 0.351  C10 3K3 17 
3K3 C11 C11 C 0 1 Y N N 27.458 -12.649 -15.395 0.964  -1.928 -0.117 C11 3K3 18 
3K3 C8  C8  C 0 1 Y N N 28.381 -11.978 -16.134 1.074  -3.294 -0.320 C8  3K3 19 
3K3 C7  C7  C 0 1 Y N N 29.520 -11.435 -15.556 2.291  -3.816 -0.758 C7  3K3 20 
3K3 C6  C6  C 0 1 Y N N 29.694 -11.591 -14.179 3.366  -2.983 -0.985 C6  3K3 21 
3K3 C12 C12 C 0 1 Y N N 27.602 -12.800 -14.015 2.038  -1.092 -0.343 C12 3K3 22 
3K3 C5  C5  C 0 1 Y N N 28.739 -12.257 -13.399 3.247  -1.617 -0.779 C5  3K3 23 
3K3 O1  O1  O 0 1 N N N 28.939 -12.401 -12.041 4.307  -0.796 -1.003 O1  3K3 24 
3K3 C4  C4  C 0 1 Y N N 28.808 -11.353 -11.159 4.877  -0.185 0.067  C4  3K3 25 
3K3 C22 C22 C 0 1 Y N N 28.486 -10.090 -11.633 4.471  -0.492 1.366  C22 3K3 26 
3K3 C23 C23 C 0 1 Y N N 28.346 -9.035  -10.744 5.074  0.151  2.427  C23 3K3 27 
3K3 N2  N2  N 0 1 Y N N 28.508 -9.228  -9.429  6.024  1.046  2.230  N2  3K3 28 
3K3 C24 C24 C 0 1 Y N N 28.809 -10.447 -8.929  6.440  1.367  1.012  C24 3K3 29 
3K3 N3  N3  N 0 1 N N N 28.955 -10.577 -7.590  7.447  2.318  0.848  N3  3K3 30 
3K3 C   C   C 0 1 N N N 29.623 -11.584 -7.036  7.629  2.924  -0.338 C   3K3 31 
3K3 O   O   O 0 1 N N N 29.840 -11.623 -5.835  8.520  3.738  -0.464 O   3K3 32 
3K3 C3  C3  C 0 1 Y N N 28.969 -11.527 -9.787  5.883  0.757  -0.102 C3  3K3 33 
3K3 C2  C2  C 0 1 N N N 29.302 -12.878 -9.201  6.362  1.119  -1.482 C2  3K3 34 
3K3 C1  C1  C 0 1 N N N 30.122 -12.705 -7.925  6.744  2.606  -1.513 C1  3K3 35 
3K3 H1  H1  H 0 1 N N N 19.661 -14.393 -19.669 -7.990 0.132  1.504  H1  3K3 36 
3K3 H2  H2  H 0 1 N N N 22.072 -14.929 -19.585 -6.420 -1.711 1.928  H2  3K3 37 
3K3 H3  H3  H 0 1 N N N 20.339 -10.981 -17.178 -5.278 1.882  -1.269 H3  3K3 38 
3K3 H4  H4  H 0 1 N N N 24.528 -13.984 -18.464 -3.783 -2.637 1.103  H4  3K3 39 
3K3 H6  H6  H 0 1 N N N 25.784 -10.907 -16.361 -1.378 -2.105 -1.646 H6  3K3 40 
3K3 H7  H7  H 0 1 N N N 26.455 -13.115 -18.553 -1.745 -3.353 1.207  H7  3K3 41 
3K3 H8  H8  H 0 1 N N N 25.858 -14.089 -16.142 -0.585 -0.915 1.150  H8  3K3 42 
3K3 H9  H9  H 0 1 N N N 30.250 -10.908 -16.153 2.392  -4.879 -0.921 H9  3K3 43 
3K3 H10 H10 H 0 1 N N N 30.580 -11.192 -13.707 4.304  -3.396 -1.324 H10 3K3 44 
3K3 H11 H11 H 0 1 N N N 26.856 -13.323 -13.435 1.938  -0.029 -0.181 H11 3K3 45 
3K3 H12 H12 H 0 1 N N N 28.345 -9.929  -12.691 3.695  -1.222 1.539  H12 3K3 46 
3K3 H13 H13 H 0 1 N N N 28.104 -8.050  -11.115 4.764  -0.082 3.435  H13 3K3 47 
3K3 H14 H14 H 0 1 N N N 28.544 -9.888  -6.993  8.021  2.544  1.597  H14 3K3 48 
3K3 H15 H15 H 0 1 N N N 28.370 -13.413 -8.966  7.226  0.507  -1.740 H15 3K3 49 
3K3 H16 H16 H 0 1 N N N 29.884 -13.459 -9.932  5.563  0.941  -2.203 H16 3K3 50 
3K3 H17 H17 H 0 1 N N N 30.083 -13.645 -7.355  5.840  3.213  -1.469 H17 3K3 51 
3K3 H18 H18 H 0 1 N N N 31.163 -12.490 -8.206  7.280  2.823  -2.436 H18 3K3 52 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
3K3 F   C19 SING N N 1  
3K3 C17 C16 DOUB Y N 2  
3K3 C17 C18 SING Y N 3  
3K3 C16 C15 SING Y N 4  
3K3 C19 C18 SING N N 5  
3K3 C19 F1  SING N N 6  
3K3 C19 F2  SING N N 7  
3K3 C18 C20 DOUB Y N 8  
3K3 C15 N   SING Y N 9  
3K3 C15 C21 DOUB Y N 10 
3K3 N   C14 SING Y N 11 
3K3 C20 C21 SING Y N 12 
3K3 C21 N1  SING Y N 13 
3K3 C9  O2  SING N N 14 
3K3 C9  C13 SING N N 15 
3K3 C9  C10 SING N N 16 
3K3 O2  C8  SING N N 17 
3K3 C14 N1  DOUB Y N 18 
3K3 C14 C13 SING N N 19 
3K3 C13 C10 SING N N 20 
3K3 C10 C11 SING N N 21 
3K3 C8  C7  DOUB Y N 22 
3K3 C8  C11 SING Y N 23 
3K3 C7  C6  SING Y N 24 
3K3 C11 C12 DOUB Y N 25 
3K3 C6  C5  DOUB Y N 26 
3K3 C12 C5  SING Y N 27 
3K3 C5  O1  SING N N 28 
3K3 O1  C4  SING N N 29 
3K3 C22 C4  DOUB Y N 30 
3K3 C22 C23 SING Y N 31 
3K3 C4  C3  SING Y N 32 
3K3 C23 N2  DOUB Y N 33 
3K3 C3  C2  SING N N 34 
3K3 C3  C24 DOUB Y N 35 
3K3 N2  C24 SING Y N 36 
3K3 C2  C1  SING N N 37 
3K3 C24 N3  SING N N 38 
3K3 C1  C   SING N N 39 
3K3 N3  C   SING N N 40 
3K3 C   O   DOUB N N 41 
3K3 C17 H1  SING N N 42 
3K3 C16 H2  SING N N 43 
3K3 C20 H3  SING N N 44 
3K3 N   H4  SING N N 45 
3K3 C13 H6  SING N N 46 
3K3 C9  H7  SING N N 47 
3K3 C10 H8  SING N N 48 
3K3 C7  H9  SING N N 49 
3K3 C6  H10 SING N N 50 
3K3 C12 H11 SING N N 51 
3K3 C22 H12 SING N N 52 
3K3 C23 H13 SING N N 53 
3K3 N3  H14 SING N N 54 
3K3 C2  H15 SING N N 55 
3K3 C2  H16 SING N N 56 
3K3 C1  H17 SING N N 57 
3K3 C1  H18 SING N N 58 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
3K3 SMILES           ACDLabs              12.01 "FC(F)(F)c1cc2nc(nc2cc1)C4C3c7c(OC34)ccc(Oc6ccnc5NC(=O)CCc56)c7" 
3K3 InChI            InChI                1.03  
"InChI=1S/C25H17F3N4O3/c26-25(27,28)11-1-4-15-16(9-11)31-24(30-15)21-20-14-10-12(2-5-17(14)35-22(20)21)34-18-7-8-29-23-13(18)3-6-19(33)32-23/h1-2,4-5,7-10,20-22H,3,6H2,(H,30,31)(H,29,32,33)/t20-,21-,22-/m0/s1" 
3K3 InChIKey         InChI                1.03  NGFFVZQXSRKHBM-FKBYEOEOSA-N 
3K3 SMILES_CANONICAL CACTVS               3.385 "FC(F)(F)c1ccc2[nH]c(nc2c1)[C@@H]3[C@H]4Oc5ccc(Oc6ccnc7NC(=O)CCc67)cc5[C@@H]34" 
3K3 SMILES           CACTVS               3.385 "FC(F)(F)c1ccc2[nH]c(nc2c1)[CH]3[CH]4Oc5ccc(Oc6ccnc7NC(=O)CCc67)cc5[CH]34" 
3K3 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1cc2c(cc1C(F)(F)F)nc([nH]2)[C@H]3[C@H]4[C@@H]3Oc5c4cc(cc5)Oc6ccnc7c6CCC(=O)N7" 
3K3 SMILES           "OpenEye OEToolkits" 1.7.6 "c1cc2c(cc1C(F)(F)F)nc([nH]2)C3C4C3Oc5c4cc(cc5)Oc6ccnc7c6CCC(=O)N7" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
3K3 "SYSTEMATIC NAME" ACDLabs              12.01 "5-({(1R,1aS,6bR)-1-[5-(trifluoromethyl)-1H-benzimidazol-2-yl]-1a,6b-dihydro-1H-cyclopropa[b][1]benzofuran-5-yl}oxy)-3,4-dihydro-1,8-naphthyridin-2(1H)-one" 
3K3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "5-[[(1R,1aS,6bR)-1-[5-(trifluoromethyl)-1H-benzimidazol-2-yl]-1a,6b-dihydro-1H-cyclopropa[b][1]benzofuran-5-yl]oxy]-3,4-dihydro-1H-1,8-naphthyridin-2-one"  
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
3K3 "Create component" 2014-08-28 RCSB 
3K3 "Initial release"  2016-02-24 RCSB 
# 
