data_0L3
# 
_chem_comp.id                                    0L3 
_chem_comp.name                                  "7-{2-deoxy-5-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-beta-D-erythro-pentofuranosyl}-5-{5-[(10-hydroxydecanoyl)amino]pent-1-yn-1-yl}-7H-pyrrolo[2,3-d]pyrimidin-4-amine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H42 N5 O14 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-02-08 
_chem_comp.pdbx_modified_date                    2012-05-11 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        741.558 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     0L3 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4DF4 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
0L3 O1G   O1G O 0 1 N N N 15.292 -13.833 -14.669 7.796   -6.569 -0.968 O1G 0L3 1  
0L3 PG    PG  P 0 1 N N N 16.462 -14.185 -13.781 7.804   -5.411 -1.888 PG  0L3 2  
0L3 O3G   O3G O 0 1 N N N 17.521 -15.056 -14.413 9.322   -5.053 -2.287 O3G 0L3 3  
0L3 O2G   O2G O 0 1 N N N 17.020 -13.005 -13.022 6.971   -5.775 -3.217 O2G 0L3 4  
0L3 O3B   O3B O 0 1 N N N 15.807 -15.117 -12.641 7.127   -4.143 -1.161 O3B 0L3 5  
0L3 PB    PB  P 0 1 N N N 16.475 -16.521 -12.216 5.854   -3.958 -0.193 PB  0L3 6  
0L3 O1B   O1B O 0 1 N N N 15.449 -17.274 -11.406 4.501   -4.070 -1.058 O1B 0L3 7  
0L3 O2B   O2B O 0 1 N N N 17.098 -17.199 -13.419 5.865   -5.013 0.844  O2B 0L3 8  
0L3 O3A   O3A O 0 1 N N N 17.626 -16.031 -11.200 5.922   -2.512 0.511  O3A 0L3 9  
0L3 PA    PA  P 0 1 N N N 19.148 -16.503 -11.417 5.246   -1.875 1.827  PA  0L3 10 
0L3 O2A   O2A O 0 1 N N N 19.388 -16.699 -12.897 3.843   -2.335 1.932  O2A 0L3 11 
0L3 O1A   O1A O 0 1 N N N 20.035 -15.568 -10.632 6.064   -2.346 3.131  O1A 0L3 12 
0L3 "O5'" O5* O 0 1 N N N 19.121 -17.919 -10.658 5.278   -0.269 1.724  O5* 0L3 13 
0L3 "C5'" C5* C 0 1 N N N 19.267 -19.144 -11.369 4.661   0.585  2.688  C5* 0L3 14 
0L3 "C4'" C4* C 0 1 N N R 18.602 -20.232 -10.543 4.879   2.046  2.289  C4* 0L3 15 
0L3 "C3'" C3* C 0 1 N N S 17.222 -19.796 -10.085 4.329   2.990  3.382  C3* 0L3 16 
0L3 "O3'" O3* O 0 1 N N N 16.202 -20.151 -11.022 5.385   3.441  4.232  O3* 0L3 17 
0L3 "C2'" C2* C 0 1 N N N 17.034 -20.520 -8.768  3.729   4.172  2.589  C2* 0L3 18 
0L3 "O4'" O4* O 0 1 N N N 19.341 -20.475 -9.344  4.114   2.365  1.107  O4* 0L3 19 
0L3 "C1'" C1* C 0 1 N N R 18.450 -20.741 -8.259  3.987   3.803  1.111  C1* 0L3 20 
0L3 N9    N9  N 0 1 Y N N 18.682 -19.757 -7.175  2.857   4.219  0.277  N9  0L3 21 
0L3 C4    C4  C 0 1 Y N N 18.377 -19.981 -5.875  2.695   5.471  -0.253 C4  0L3 22 
0L3 N3    N3  N 0 1 Y N N 17.855 -21.029 -5.192  3.406   6.597  -0.204 N3  0L3 23 
0L3 C2    C2  C 0 1 Y N N 17.663 -20.973 -3.860  2.994   7.679  -0.829 C2  0L3 24 
0L3 N1    N1  N 0 1 Y N N 17.962 -19.902 -3.101  1.874   7.716  -1.528 N1  0L3 25 
0L3 C6    C6  C 0 1 Y N N 18.490 -18.777 -3.634  1.098   6.642  -1.635 C6  0L3 26 
0L3 N6    N6  N 0 1 N N N 18.792 -17.697 -2.870  -0.075  6.684  -2.368 N6  0L3 27 
0L3 C5    C5  C 0 1 Y N N 18.723 -18.779 -5.097  1.496   5.466  -0.986 C5  0L3 28 
0L3 C8    C8  C 0 1 Y N N 19.194 -18.516 -7.374  1.818   3.410  -0.089 C8  0L3 29 
0L3 C7    C7  C 0 1 Y N N 19.234 -17.892 -6.148  0.944   4.110  -0.859 C7  0L3 30 
0L3 C31   C31 C 0 1 N N N 19.692 -16.656 -5.932  -0.270  3.621  -1.439 C31 0L3 31 
0L3 C32   C32 C 0 1 N N N 20.084 -15.556 -5.738  -1.266  3.219  -1.914 C32 0L3 32 
0L3 C33   C33 C 0 1 N N N 20.596 -14.204 -5.460  -2.514  2.716  -2.510 C33 0L3 33 
0L3 C34   C34 C 0 1 N N N 21.403 -13.653 -6.624  -3.452  2.237  -1.401 C34 0L3 34 
0L3 C35   C35 C 0 1 N N N 20.772 -13.969 -7.974  -4.750  1.714  -2.020 C35 0L3 35 
0L3 N36   N36 N 0 1 N N N 21.348 -13.193 -9.062  -5.648  1.255  -0.958 N36 0L3 36 
0L3 C37   C37 C 0 1 N N N 21.053 -11.904 -9.225  -6.858  0.750  -1.270 C37 0L3 37 
0L3 O38   O38 O 0 1 N N N 20.106 -11.371 -8.674  -7.203  0.676  -2.430 O38 0L3 38 
0L3 C39   C39 C 0 1 N N N 21.943 -11.098 -10.142 -7.782  0.277  -0.177 C39 0L3 39 
0L3 C40   C40 C 0 1 N N N 21.467 -11.215 -11.586 -9.079  -0.245 -0.797 C40 0L3 40 
0L3 C41   C41 C 0 1 N N N 22.084 -10.115 -12.442 -10.017 -0.725 0.313  C41 0L3 41 
0L3 C42   C42 C 0 1 N N N 22.217 -10.562 -13.893 -11.315 -1.248 -0.307 C42 0L3 42 
0L3 C43   C43 C 0 1 N N N 20.862 -10.650 -14.582 -12.253 -1.727 0.803  C43 0L3 43 
0L3 C44   C44 C 0 1 N N N 20.972 -11.436 -15.883 -13.550 -2.250 0.183  C44 0L3 44 
0L3 C45   C45 C 0 1 N N N 19.743 -11.220 -16.759 -14.488 -2.730 1.293  C45 0L3 45 
0L3 C46   C46 C 0 1 N N N 19.662 -9.767  -17.213 -15.786 -3.253 0.673  C46 0L3 46 
0L3 C47   C47 C 0 1 N N N 18.254 -9.399  -17.667 -16.724 -3.732 1.783  C47 0L3 47 
0L3 O48   O48 O 0 1 N N N 18.251 -8.060  -18.173 -17.936 -4.220 1.204  O48 0L3 48 
0L3 H1    H1  H 0 1 N N N 17.441 -15.943 -14.082 9.792   -5.772 -2.730 H1  0L3 49 
0L3 H2    H2  H 0 1 N N N 16.525 -12.224 -13.241 6.935   -5.060 -3.867 H2  0L3 50 
0L3 H3    H3  H 0 1 N N N 15.318 -18.136 -11.783 4.426   -3.407 -1.759 H3  0L3 51 
0L3 H4    H4  H 0 1 N N N 20.686 -15.188 -11.210 6.994   -2.078 3.130  H4  0L3 52 
0L3 H5    H5  H 0 1 N N N 18.780 -19.068 -12.352 3.592   0.375  2.728  H5  0L3 53 
0L3 H6    H6  H 0 1 N N N 20.334 -19.375 -11.505 5.102   0.406  3.668  H6  0L3 54 
0L3 H7    H7  H 0 1 N N N 18.518 -21.150 -11.143 5.939   2.238  2.121  H7  0L3 55 
0L3 H8    H8  H 0 1 N N N 17.223 -18.710 -9.908  3.556   2.489  3.965  H8  0L3 56 
0L3 H9    H9  H 0 1 N N N 15.358 -19.861 -10.697 5.095   4.037  4.936  H9  0L3 57 
0L3 H10   H10 H 0 1 N N N 16.458 -19.903 -8.063  2.659   4.256  2.780  H10 0L3 58 
0L3 H11   H11 H 0 1 N N N 16.520 -21.480 -8.921  4.238   5.102  2.845  H11 0L3 59 
0L3 H12   H12 H 0 1 N N N 18.564 -21.769 -7.884  4.910   4.266  0.761  H12 0L3 60 
0L3 H13   H13 H 0 1 N N N 17.244 -21.840 -3.371  3.596   8.574  -0.767 H13 0L3 61 
0L3 H14   H14 H 0 1 N N N 18.563 -17.889 -1.916  -0.340  7.505  -2.812 H14 0L3 62 
0L3 H15   H15 H 0 1 N N N 19.769 -17.498 -2.945  -0.632  5.894  -2.438 H15 0L3 63 
0L3 H16   H16 H 0 1 N N N 19.511 -18.097 -8.318  1.707   2.373  0.193  H16 0L3 64 
0L3 H17   H17 H 0 1 N N N 21.239 -14.244 -4.569  -2.996  3.516  -3.073 H17 0L3 65 
0L3 H18   H18 H 0 1 N N N 19.745 -13.534 -5.269  -2.289  1.886  -3.179 H18 0L3 66 
0L3 H19   H19 H 0 1 N N N 22.411 -14.093 -6.594  -2.970  1.437  -0.838 H19 0L3 67 
0L3 H20   H20 H 0 1 N N N 21.477 -12.561 -6.516  -3.678  3.067  -0.732 H20 0L3 68 
0L3 H21   H21 H 0 1 N N N 19.695 -13.751 -7.918  -5.232  2.513  -2.583 H21 0L3 69 
0L3 H22   H22 H 0 1 N N N 20.919 -15.038 -8.189  -4.524  0.884  -2.689 H22 0L3 70 
0L3 H23   H23 H 0 1 N N N 21.978 -13.636 -9.700  -5.372  1.314  -0.030 H23 0L3 71 
0L3 H24   H24 H 0 1 N N N 22.974 -11.475 -10.069 -7.300  -0.522 0.386  H24 0L3 72 
0L3 H25   H25 H 0 1 N N N 21.916 -10.042 -9.836  -8.007  1.108  0.492  H25 0L3 73 
0L3 H26   H26 H 0 1 N N N 20.371 -11.124 -11.614 -9.561  0.554  -1.359 H26 0L3 74 
0L3 H27   H27 H 0 1 N N N 21.764 -12.195 -11.987 -8.854  -1.076 -1.466 H27 0L3 75 
0L3 H28   H28 H 0 1 N N N 23.081 -9.870  -12.048 -9.535  -1.525 0.876  H28 0L3 76 
0L3 H29   H29 H 0 1 N N N 21.443 -9.222  -12.398 -10.243 0.105  0.982  H29 0L3 77 
0L3 H30   H30 H 0 1 N N N 22.695 -11.552 -13.918 -11.797 -0.448 -0.869 H30 0L3 78 
0L3 H31   H31 H 0 1 N N N 22.845 -9.838  -14.433 -11.089 -2.078 -0.976 H31 0L3 79 
0L3 H32   H32 H 0 1 N N N 20.502 -9.634  -14.803 -11.771 -2.527 1.366  H32 0L3 80 
0L3 H33   H33 H 0 1 N N N 20.149 -11.155 -13.914 -12.479 -0.897 1.472  H33 0L3 81 
0L3 H34   H34 H 0 1 N N N 21.063 -12.507 -15.649 -14.032 -1.451 -0.380 H34 0L3 82 
0L3 H35   H35 H 0 1 N N N 21.866 -11.103 -16.430 -13.325 -3.080 -0.486 H35 0L3 83 
0L3 H36   H36 H 0 1 N N N 18.839 -11.471 -16.184 -14.007 -3.529 1.856  H36 0L3 84 
0L3 H37   H37 H 0 1 N N N 19.808 -11.872 -17.642 -14.714 -1.900 1.962  H37 0L3 85 
0L3 H38   H38 H 0 1 N N N 20.358 -9.615  -18.051 -16.268 -2.453 0.110  H38 0L3 86 
0L3 H39   H39 H 0 1 N N N 19.949 -9.115  -16.375 -15.560 -4.083 0.004  H39 0L3 87 
0L3 H40   H40 H 0 1 N N N 17.563 -9.470  -16.814 -16.242 -4.532 2.345  H40 0L3 88 
0L3 H41   H41 H 0 1 N N N 17.931 -10.091 -18.459 -16.949 -2.902 2.452  H41 0L3 89 
0L3 H42   H42 H 0 1 N N N 17.374 -7.830  -18.456 -18.579 -4.542 1.851  H42 0L3 90 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
0L3 O48   C47   SING N N 1  
0L3 C47   C46   SING N N 2  
0L3 C46   C45   SING N N 3  
0L3 C45   C44   SING N N 4  
0L3 C44   C43   SING N N 5  
0L3 O1G   PG    DOUB N N 6  
0L3 C43   C42   SING N N 7  
0L3 O3G   PG    SING N N 8  
0L3 C42   C41   SING N N 9  
0L3 PG    O2G   SING N N 10 
0L3 PG    O3B   SING N N 11 
0L3 O2B   PB    DOUB N N 12 
0L3 O2A   PA    DOUB N N 13 
0L3 O3B   PB    SING N N 14 
0L3 C41   C40   SING N N 15 
0L3 PB    O1B   SING N N 16 
0L3 PB    O3A   SING N N 17 
0L3 C40   C39   SING N N 18 
0L3 PA    O3A   SING N N 19 
0L3 PA    "O5'" SING N N 20 
0L3 PA    O1A   SING N N 21 
0L3 "C5'" "O5'" SING N N 22 
0L3 "C5'" "C4'" SING N N 23 
0L3 "O3'" "C3'" SING N N 24 
0L3 "C4'" "C3'" SING N N 25 
0L3 "C4'" "O4'" SING N N 26 
0L3 C39   C37   SING N N 27 
0L3 "C3'" "C2'" SING N N 28 
0L3 "O4'" "C1'" SING N N 29 
0L3 C37   N36   SING N N 30 
0L3 C37   O38   DOUB N N 31 
0L3 N36   C35   SING N N 32 
0L3 "C2'" "C1'" SING N N 33 
0L3 "C1'" N9    SING N N 34 
0L3 C35   C34   SING N N 35 
0L3 C8    N9    SING Y N 36 
0L3 C8    C7    DOUB Y N 37 
0L3 N9    C4    SING Y N 38 
0L3 C34   C33   SING N N 39 
0L3 C7    C31   SING N N 40 
0L3 C7    C5    SING Y N 41 
0L3 C31   C32   TRIP N N 42 
0L3 C4    N3    DOUB Y N 43 
0L3 C4    C5    SING Y N 44 
0L3 C32   C33   SING N N 45 
0L3 N3    C2    SING Y N 46 
0L3 C5    C6    DOUB Y N 47 
0L3 C2    N1    DOUB Y N 48 
0L3 C6    N1    SING Y N 49 
0L3 C6    N6    SING N N 50 
0L3 O3G   H1    SING N N 51 
0L3 O2G   H2    SING N N 52 
0L3 O1B   H3    SING N N 53 
0L3 O1A   H4    SING N N 54 
0L3 "C5'" H5    SING N N 55 
0L3 "C5'" H6    SING N N 56 
0L3 "C4'" H7    SING N N 57 
0L3 "C3'" H8    SING N N 58 
0L3 "O3'" H9    SING N N 59 
0L3 "C2'" H10   SING N N 60 
0L3 "C2'" H11   SING N N 61 
0L3 "C1'" H12   SING N N 62 
0L3 C2    H13   SING N N 63 
0L3 N6    H14   SING N N 64 
0L3 N6    H15   SING N N 65 
0L3 C8    H16   SING N N 66 
0L3 C33   H17   SING N N 67 
0L3 C33   H18   SING N N 68 
0L3 C34   H19   SING N N 69 
0L3 C34   H20   SING N N 70 
0L3 C35   H21   SING N N 71 
0L3 C35   H22   SING N N 72 
0L3 N36   H23   SING N N 73 
0L3 C39   H24   SING N N 74 
0L3 C39   H25   SING N N 75 
0L3 C40   H26   SING N N 76 
0L3 C40   H27   SING N N 77 
0L3 C41   H28   SING N N 78 
0L3 C41   H29   SING N N 79 
0L3 C42   H30   SING N N 80 
0L3 C42   H31   SING N N 81 
0L3 C43   H32   SING N N 82 
0L3 C43   H33   SING N N 83 
0L3 C44   H34   SING N N 84 
0L3 C44   H35   SING N N 85 
0L3 C45   H36   SING N N 86 
0L3 C45   H37   SING N N 87 
0L3 C46   H38   SING N N 88 
0L3 C46   H39   SING N N 89 
0L3 C47   H40   SING N N 90 
0L3 C47   H41   SING N N 91 
0L3 O48   H42   SING N N 92 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
0L3 SMILES           ACDLabs              12.01 "O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC3OC(n2cc(C#CCCCNC(=O)CCCCCCCCCO)c1c(ncnc12)N)CC3O" 
0L3 InChI            InChI                1.03  
;InChI=1S/C26H42N5O14P3/c27-25-24-19(11-7-6-9-13-28-22(34)12-8-4-2-1-3-5-10-14-32)16-31(26(24)30-18-29-25)23-15-20(33)21(43-23)17-42-47(38,39)45-48(40,41)44-46(35,36)37/h16,18,20-21,23,32-33H,1-6,8-10,12-15,17H2,(H,28,34)(H,38,39)(H,40,41)(H2,27,29,30)(H2,35,36,37)/t20-,21+,23+/m0/s1
;
0L3 InChIKey         InChI                1.03  JQTQPUSSMXPQMW-QZNHQXDQSA-N 
0L3 SMILES_CANONICAL CACTVS               3.370 "Nc1ncnc2n(cc(C#CCCCNC(=O)CCCCCCCCCO)c12)[C@H]3C[C@H](O)[C@@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O3" 
0L3 SMILES           CACTVS               3.370 "Nc1ncnc2n(cc(C#CCCCNC(=O)CCCCCCCCCO)c12)[CH]3C[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O3" 
0L3 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1c(c2c(ncnc2n1[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)N)C#CCCCNC(=O)CCCCCCCCCO" 
0L3 SMILES           "OpenEye OEToolkits" 1.7.6 "c1c(c2c(ncnc2n1C3CC(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)N)C#CCCCNC(=O)CCCCCCCCCO" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
0L3 "SYSTEMATIC NAME" ACDLabs              12.01 "7-{2-deoxy-5-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-beta-D-erythro-pentofuranosyl}-5-{5-[(10-hydroxydecanoyl)amino]pent-1-yn-1-yl}-7H-pyrrolo[2,3-d]pyrimidin-4-amine" 
0L3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[[(2R,3S,5R)-5-[4-azanyl-5-[5-(10-oxidanyldecanoylamino)pent-1-ynyl]pyrrolo[2,3-d]pyrimidin-7-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate"                 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
0L3 "Create component" 2012-02-08 RCSB 
# 
