data_YT2
# 
_chem_comp.id                                    YT2 
_chem_comp.name                                  "(1S)-1-{6-[(1S)-1-amino-1,3-dihydrospiro[indene-2,4'-piperidin]-1'-yl]-3-(3,4-dihydro-1,5-naphthyridin-1(2H)-yl)-1H-pyrazolo[3,4-b]pyrazin-5-yl}ethan-1-ol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C28 H32 N8 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-20 
_chem_comp.pdbx_modified_date                    2023-10-06 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        496.607 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YT2 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8T6G 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YT2 C10  C1  C 0 1 N N N 18.473 -26.437 24.677 -3.843 1.197  -1.413 C10  YT2 1  
YT2 C12  C2  C 0 1 N N N 17.059 -25.787 23.205 -6.081 1.122  -0.263 C12  YT2 2  
YT2 C13  C3  C 0 1 Y N N 15.517 -25.760 22.968 -6.938 -0.052 0.167  C13  YT2 3  
YT2 C14  C4  C 0 1 Y N N 14.862 -25.666 24.199 -6.223 -1.228 0.030  C14  YT2 4  
YT2 C15  C5  C 0 1 N N S 15.913 -25.589 25.307 -4.836 -0.926 -0.499 C15  YT2 5  
YT2 C18  C6  C 0 1 Y N N 12.694 -25.688 23.096 -8.109 -2.468 0.839  C18  YT2 6  
YT2 C19  C7  C 0 1 Y N N 13.343 -25.786 21.846 -8.823 -1.292 0.978  C19  YT2 7  
YT2 N21  N1  N 0 1 Y N N 20.315 -23.454 26.723 -0.101 -0.641 -0.266 N21  YT2 8  
YT2 C22  C8  C 0 1 Y N N 20.958 -23.195 27.900 1.186  -0.973 -0.251 C22  YT2 9  
YT2 C23  C9  C 0 1 Y N N 22.192 -23.746 28.151 2.159  0.020  -0.018 C23  YT2 10 
YT2 C29  C10 C 0 1 Y N N 26.178 -24.447 30.221 7.123  -0.268 0.078  C29  YT2 11 
YT2 C32  C11 C 0 1 Y N N 26.588 -23.582 27.614 6.913  -2.977 0.383  C32  YT2 12 
YT2 C33  C12 C 0 1 Y N N 27.601 -24.246 28.364 8.134  -2.335 0.283  C33  YT2 13 
YT2 C01  C13 C 0 1 N N N 23.165 -27.067 25.656 0.390  3.855  -0.854 C01  YT2 14 
YT2 C02  C14 C 0 1 N N S 22.847 -25.700 25.046 0.091  3.028  0.398  C02  YT2 15 
YT2 C03  C15 C 0 1 Y N N 22.137 -24.796 26.060 0.511  1.599  0.168  C03  YT2 16 
YT2 C05  C16 C 0 1 Y N N 20.873 -24.230 25.802 -0.458 0.617  -0.062 C05  YT2 17 
YT2 C07  C17 C 0 1 N N N 18.823 -23.617 24.355 -2.527 0.311  1.020  C07  YT2 18 
YT2 C08  C18 C 0 1 N N N 17.598 -24.204 25.088 -3.964 0.841  1.067  C08  YT2 19 
YT2 C09  C19 C 0 1 N N N 17.294 -25.573 24.697 -4.642 0.582  -0.272 C09  YT2 20 
YT2 C11  C20 C 0 1 N N N 19.762 -25.862 24.083 -2.411 0.655  -1.379 C11  YT2 21 
YT2 C17  C21 C 0 1 Y N N 13.450 -25.625 24.273 -6.812 -2.435 0.366  C17  YT2 22 
YT2 C20  C22 C 0 1 Y N N 14.743 -25.819 21.777 -8.238 -0.087 0.642  C20  YT2 23 
YT2 C24  C23 C 0 1 Y N N 22.591 -23.273 29.459 3.456  -0.659 -0.064 C24  YT2 24 
YT2 C26  C24 C 0 1 N N N 23.630 -23.958 31.592 4.827  1.397  0.244  C26  YT2 25 
YT2 C27  C25 C 0 1 N N N 24.875 -24.200 32.420 6.007  1.848  -0.628 C27  YT2 26 
YT2 C28  C26 C 0 1 N N N 25.986 -24.944 31.696 7.291  1.221  -0.086 C28  YT2 27 
YT2 C30  C27 C 0 1 Y N N 25.125 -23.791 29.543 5.865  -0.843 0.174  C30  YT2 28 
YT2 C31  C28 C 0 1 Y N N 25.338 -23.347 28.210 5.753  -2.223 0.331  C31  YT2 29 
YT2 N04  N2  N 0 1 Y N N 22.770 -24.539 27.224 1.787  1.283  0.185  N04  YT2 30 
YT2 N06  N3  N 0 1 N N N 20.104 -24.446 24.554 -1.803 0.964  -0.078 N06  YT2 31 
YT2 N16  N4  N 0 1 N N N 15.816 -26.763 26.143 -4.757 -1.241 -1.932 N16  YT2 32 
YT2 N25  N5  N 0 1 N N N 23.819 -23.574 30.218 4.707  -0.062 0.115  N25  YT2 33 
YT2 N34  N6  N 0 1 Y N N 27.372 -24.651 29.623 8.204  -1.028 0.137  N34  YT2 34 
YT2 N35  N7  N 0 1 Y N N 21.602 -22.509 29.923 3.231  -1.924 -0.302 N35  YT2 35 
YT2 N36  N8  N 0 1 Y N N 20.596 -22.441 28.985 1.857  -2.153 -0.422 N36  YT2 36 
YT2 O37  O1  O 0 1 N N N 24.047 -25.069 24.696 0.813  3.565  1.508  O37  YT2 37 
YT2 H101 H1  H 0 0 N N N 18.214 -27.334 24.096 -4.307 0.938  -2.365 H101 YT2 38 
YT2 H102 H2  H 0 0 N N N 18.689 -26.724 25.717 -3.825 2.282  -1.302 H102 YT2 39 
YT2 H121 H3  H 0 0 N N N 17.470 -26.759 22.895 -6.367 1.453  -1.261 H121 YT2 40 
YT2 H122 H4  H 0 0 N N N 17.542 -24.984 22.629 -6.174 1.942  0.449  H122 YT2 41 
YT2 H151 H5  H 0 0 N N N 15.757 -24.675 25.899 -4.088 -1.493 0.055  H151 YT2 42 
YT2 H181 H6  H 0 0 N N N 11.615 -25.662 23.144 -8.565 -3.411 1.100  H181 YT2 43 
YT2 H191 H7  H 0 0 N N N 12.759 -25.836 20.939 -9.837 -1.316 1.348  H191 YT2 44 
YT2 H321 H8  H 0 0 N N N 26.779 -23.263 26.600 6.865  -4.049 0.504  H321 YT2 45 
YT2 H331 H9  H 0 0 N N N 28.566 -24.426 27.914 9.044  -2.915 0.321  H331 YT2 46 
YT2 H012 H10 H 0 0 N N N 22.228 -27.572 25.935 1.468  3.891  -1.017 H012 YT2 47 
YT2 H013 H11 H 0 0 N N N 23.706 -27.680 24.920 -0.092 3.396  -1.717 H013 YT2 48 
YT2 H011 H12 H 0 0 N N N 23.789 -26.932 26.552 0.009  4.868  -0.721 H011 YT2 49 
YT2 H021 H13 H 0 0 N N N 22.200 -25.837 24.167 -0.978 3.063  0.609  H021 YT2 50 
YT2 H072 H14 H 0 0 N N N 19.003 -22.600 24.734 -2.029 0.528  1.964  H072 YT2 51 
YT2 H071 H15 H 0 0 N N N 18.599 -23.573 23.279 -2.543 -0.766 0.855  H071 YT2 52 
YT2 H082 H16 H 0 0 N N N 17.797 -24.186 26.170 -4.514 0.330  1.858  H082 YT2 53 
YT2 H081 H17 H 0 0 N N N 16.723 -23.575 24.865 -3.950 1.912  1.268  H081 YT2 54 
YT2 H112 H18 H 0 0 N N N 19.657 -25.844 22.988 -2.427 -0.425 -1.525 H112 YT2 55 
YT2 H111 H19 H 0 0 N N N 20.594 -26.526 24.360 -1.826 1.120  -2.173 H111 YT2 56 
YT2 H171 H20 H 0 0 N N N 12.958 -25.546 25.231 -6.255 -3.354 0.257  H171 YT2 57 
YT2 H201 H21 H 0 0 N N N 15.234 -25.889 20.818 -8.796 0.831  0.751  H201 YT2 58 
YT2 H261 H22 H 0 0 N N N 23.056 -23.158 32.083 5.016  1.661  1.285  H261 YT2 59 
YT2 H262 H23 H 0 0 N N N 23.043 -24.888 31.598 3.910  1.876  -0.098 H262 YT2 60 
YT2 H272 H24 H 0 0 N N N 25.269 -23.224 32.740 5.846  1.522  -1.655 H272 YT2 61 
YT2 H271 H25 H 0 0 N N N 24.589 -24.788 33.305 6.088  2.934  -0.598 H271 YT2 62 
YT2 H282 H26 H 0 0 N N N 25.740 -26.016 31.678 7.530  1.665  0.880  H282 YT2 63 
YT2 H281 H27 H 0 0 N N N 26.927 -24.793 32.245 8.108  1.416  -0.781 H281 YT2 64 
YT2 H311 H28 H 0 0 N N N 24.555 -22.839 27.666 4.783  -2.693 0.409  H311 YT2 65 
YT2 H163 H29 H 0 0 N N N 16.503 -26.714 26.868 -4.930 -2.221 -2.096 H163 YT2 66 
YT2 H161 H30 H 0 0 N N N 14.904 -26.808 26.550 -5.393 -0.666 -2.464 H161 YT2 67 
YT2 H361 H32 H 0 0 N N N 19.743 -21.927 29.080 1.444  -3.012 -0.599 H361 YT2 68 
YT2 H371 H33 H 0 0 N N N 23.859 -24.219 24.316 0.592  4.484  1.713  H371 YT2 69 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YT2 C20 C19  DOUB Y N 1  
YT2 C20 C13  SING Y N 2  
YT2 C19 C18  SING Y N 3  
YT2 C13 C12  SING N N 4  
YT2 C13 C14  DOUB Y N 5  
YT2 C18 C17  DOUB Y N 6  
YT2 C12 C09  SING N N 7  
YT2 C11 N06  SING N N 8  
YT2 C11 C10  SING N N 9  
YT2 C14 C17  SING Y N 10 
YT2 C14 C15  SING N N 11 
YT2 C07 N06  SING N N 12 
YT2 C07 C08  SING N N 13 
YT2 N06 C05  SING N N 14 
YT2 C10 C09  SING N N 15 
YT2 O37 C02  SING N N 16 
YT2 C09 C08  SING N N 17 
YT2 C09 C15  SING N N 18 
YT2 C02 C01  SING N N 19 
YT2 C02 C03  SING N N 20 
YT2 C15 N16  SING N N 21 
YT2 C05 C03  DOUB Y N 22 
YT2 C05 N21  SING Y N 23 
YT2 C03 N04  SING Y N 24 
YT2 N21 C22  DOUB Y N 25 
YT2 N04 C23  DOUB Y N 26 
YT2 C32 C31  DOUB Y N 27 
YT2 C32 C33  SING Y N 28 
YT2 C22 C23  SING Y N 29 
YT2 C22 N36  SING Y N 30 
YT2 C23 C24  SING Y N 31 
YT2 C31 C30  SING Y N 32 
YT2 C33 N34  DOUB Y N 33 
YT2 N36 N35  SING Y N 34 
YT2 C24 N35  DOUB Y N 35 
YT2 C24 N25  SING N N 36 
YT2 C30 N25  SING N N 37 
YT2 C30 C29  DOUB Y N 38 
YT2 N34 C29  SING Y N 39 
YT2 N25 C26  SING N N 40 
YT2 C29 C28  SING N N 41 
YT2 C26 C27  SING N N 42 
YT2 C28 C27  SING N N 43 
YT2 C10 H101 SING N N 44 
YT2 C10 H102 SING N N 45 
YT2 C12 H121 SING N N 46 
YT2 C12 H122 SING N N 47 
YT2 C15 H151 SING N N 48 
YT2 C18 H181 SING N N 49 
YT2 C19 H191 SING N N 50 
YT2 C32 H321 SING N N 51 
YT2 C33 H331 SING N N 52 
YT2 C01 H012 SING N N 53 
YT2 C01 H013 SING N N 54 
YT2 C01 H011 SING N N 55 
YT2 C02 H021 SING N N 56 
YT2 C07 H072 SING N N 57 
YT2 C07 H071 SING N N 58 
YT2 C08 H082 SING N N 59 
YT2 C08 H081 SING N N 60 
YT2 C11 H112 SING N N 61 
YT2 C11 H111 SING N N 62 
YT2 C17 H171 SING N N 63 
YT2 C20 H201 SING N N 64 
YT2 C26 H261 SING N N 65 
YT2 C26 H262 SING N N 66 
YT2 C27 H272 SING N N 67 
YT2 C27 H271 SING N N 68 
YT2 C28 H282 SING N N 69 
YT2 C28 H281 SING N N 70 
YT2 C31 H311 SING N N 71 
YT2 N16 H163 SING N N 72 
YT2 N16 H161 SING N N 73 
YT2 N36 H361 SING N N 74 
YT2 O37 H371 SING N N 75 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YT2 SMILES           ACDLabs              12.01 "NC1c2ccccc2CC21CCN(CC2)c1nc2[NH]nc(c2nc1C(C)O)N1CCCc2ncccc21"                                                                                                                                                                
YT2 InChI            InChI                1.06  "InChI=1S/C28H32N8O/c1-17(37)22-26(35-14-10-28(11-15-35)16-18-6-2-3-7-19(18)24(28)29)32-25-23(31-22)27(34-33-25)36-13-5-8-20-21(36)9-4-12-30-20/h2-4,6-7,9,12,17,24,37H,5,8,10-11,13-16,29H2,1H3,(H,32,33,34)/t17-,24+/m0/s1" 
YT2 InChIKey         InChI                1.06  JSFQOTHYMBHCNB-BXKMTCNYSA-N                                                                                                                                                                                                   
YT2 SMILES_CANONICAL CACTVS               3.385 "C[C@H](O)c1nc2c([nH]nc2N3CCCc4ncccc34)nc1N5CCC6(CC5)Cc7ccccc7[C@H]6N"                                                                                                                                                        
YT2 SMILES           CACTVS               3.385 "C[CH](O)c1nc2c([nH]nc2N3CCCc4ncccc34)nc1N5CCC6(CC5)Cc7ccccc7[CH]6N"                                                                                                                                                          
YT2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](c1c(nc2c(n1)c(n[nH]2)N3CCCc4c3cccn4)N5CCC6(CC5)Cc7ccccc7[C@H]6N)O"                                                                                                                                                   
YT2 SMILES           "OpenEye OEToolkits" 2.0.7 "CC(c1c(nc2c(n1)c(n[nH]2)N3CCCc4c3cccn4)N5CCC6(CC5)Cc7ccccc7C6N)O"                                                                                                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YT2 "SYSTEMATIC NAME" ACDLabs              12.01 "(1S)-1-{6-[(1S)-1-amino-1,3-dihydrospiro[indene-2,4'-piperidin]-1'-yl]-3-(3,4-dihydro-1,5-naphthyridin-1(2H)-yl)-1H-pyrazolo[3,4-b]pyrazin-5-yl}ethan-1-ol"          
YT2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{S})-1-[6-[(1~{S})-1-azanylspiro[1,3-dihydroindene-2,4'-piperidine]-1'-yl]-3-(3,4-dihydro-2~{H}-1,5-naphthyridin-1-yl)-1~{H}-pyrazolo[3,4-b]pyrazin-5-yl]ethanol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YT2 "Create component" 2023-06-20 RCSB 
YT2 "Initial release"  2023-10-11 RCSB 
# 
