data_YG2
# 
_chem_comp.id                                    YG2 
_chem_comp.name                                  "[(3aR,6aS)-5-(1H-benzotriazole-5-carbonyl)hexahydropyrrolo[3,4-c]pyrrol-2(1H)-yl][4-(2,2,2-trifluoroethoxy)quinolin-2-yl]methanone" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H21 F3 N6 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-13 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        510.468 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YG2 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7G5U 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YG2 C11 C1  C 0 1 N N N N N N -11.449 12.435 52.712 5.287  1.858  0.249  C11 YG2 1  
YG2 C15 C2  C 0 1 Y N N N N N -8.362  10.547 53.733 6.105  -1.760 0.768  C15 YG2 2  
YG2 C16 C3  C 0 1 Y N N N N N -9.140  13.328 53.349 7.363  0.559  -0.149 C16 YG2 3  
YG2 C17 C4  C 0 1 Y N N N N N -7.816  12.958 53.772 8.068  -0.648 -0.127 C17 YG2 4  
YG2 C18 C5  C 0 1 Y N N N N N -7.446  11.580 53.963 7.428  -1.813 0.336  C18 YG2 5  
YG2 C22 C6  C 0 1 N N N N N N -14.193 8.731  47.483 -1.808 1.843  -0.187 C22 YG2 6  
YG2 C23 C7  C 0 1 Y N N N N N -13.410 8.196  46.286 -2.549 0.559  -0.155 C23 YG2 7  
YG2 C26 C8  C 0 1 Y N N N N N -12.716 6.325  44.933 -4.645 -0.613 -0.034 C26 YG2 8  
YG2 C27 C9  C 0 1 Y N N N N N -13.418 6.777  46.051 -3.946 0.579  -0.064 C27 YG2 9  
YG2 C28 C10 C 0 1 Y N N N N N -12.049 7.220  44.040 -3.908 -1.817 -0.098 C28 YG2 10 
YG2 N1  N1  N 0 1 N N N N N N -11.921 12.072 51.464 3.964  1.852  -0.005 N1  YG2 11 
YG2 C2  C11 C 0 1 N N N N N N -11.086 11.508 50.348 3.088  3.057  -0.157 C2  YG2 12 
YG2 C3  C12 C 0 1 N N N N N N -13.364 12.157 51.076 3.109  0.641  -0.192 C3  YG2 13 
YG2 C4  C13 C 0 1 N N S N N N -13.345 10.749 50.479 1.781  1.180  -0.617 C4  YG2 14 
YG2 C5  C14 C 0 1 N N S N N N -12.235 11.046 49.433 1.726  2.519  0.224  C5  YG2 15 
YG2 C6  C15 C 0 1 N N N N N N -12.236 9.825  48.540 0.419  3.051  -0.323 C6  YG2 16 
YG2 N7  N2  N 0 1 N N N N N N -13.678 9.508  48.499 -0.463 1.842  -0.280 N7  YG2 17 
YG2 C8  C16 C 0 1 N N N N N N -14.442 10.063 49.661 0.414  0.636  -0.359 C8  YG2 18 
YG2 C12 C17 C 0 1 Y N N N N N -10.006 12.271 53.118 6.041  0.588  0.275  C12 YG2 19 
YG2 O13 O1  O 0 1 N N N N N N -12.275 12.851 53.527 5.862  2.910  0.452  O13 YG2 20 
YG2 C14 C18 C 0 1 Y N N N N N -9.619  10.911 53.327 5.421  -0.582 0.739  C14 YG2 21 
YG2 N19 N3  N 0 1 Y N N N N N -6.099  11.600 54.390 8.356  -2.820 0.241  N19 YG2 22 
YG2 N20 N4  N 0 1 Y N N N N N -5.695  12.894 54.431 9.525  -2.243 -0.274 N20 YG2 23 
YG2 N21 N5  N 0 1 Y N N N N N -6.652  13.717 54.083 9.331  -0.987 -0.477 N21 YG2 24 
YG2 O24 O2  O 0 1 N N N N N N -15.410 8.488  47.516 -2.412 2.895  -0.129 O24 YG2 25 
YG2 N25 N6  N 0 1 Y N N N N N -12.802 9.086  45.474 -1.877 -0.575 -0.219 N25 YG2 26 
YG2 C29 C19 C 0 1 Y N N N N N -12.113 8.605  44.371 -2.495 -1.756 -0.195 C29 YG2 27 
YG2 C30 C20 C 0 1 Y N N N N N -11.464 9.578  43.530 -1.763 -2.957 -0.258 C30 YG2 28 
YG2 C31 C21 C 0 1 Y N N N N N -10.771 9.122  42.416 -2.417 -4.149 -0.227 C31 YG2 29 
YG2 C32 C22 C 0 1 Y N N N N N -10.699 7.730  42.087 -3.806 -4.205 -0.132 C32 YG2 30 
YG2 C33 C23 C 0 1 Y N N N N N -11.319 6.796  42.876 -4.549 -3.065 -0.069 C33 YG2 31 
YG2 O34 O3  O 0 1 N N N N N N -12.593 5.014  44.557 -5.998 -0.627 0.059  O34 YG2 32 
YG2 C35 C24 C 0 1 N N N N N N -12.912 4.025  45.532 -6.657 0.640  0.118  C35 YG2 33 
YG2 C36 C25 C 0 1 N N N N N N -12.455 2.695  44.842 -8.168 0.424  0.220  C36 YG2 34 
YG2 F37 F1  F 0 1 N N N N N N -12.884 1.589  45.498 -8.458 -0.307 1.377  F37 YG2 35 
YG2 F38 F2  F 0 1 N N N N N N -12.910 2.611  43.576 -8.814 1.664  0.278  F38 YG2 36 
YG2 F39 F3  F 0 1 N N N N N N -11.119 2.591  44.730 -8.615 -0.282 -0.903 F39 YG2 37 
YG2 H49 H1  H 0 1 N N N N N N -8.090  9.511  53.869 5.618  -2.657 1.122  H49 YG2 38 
YG2 H50 H2  H 0 1 N N N N N N -9.439  14.358 53.220 7.841  1.461  -0.502 H50 YG2 39 
YG2 H52 H3  H 0 1 N N N N N N -13.941 6.096  46.706 -4.474 1.520  -0.017 H52 YG2 40 
YG2 H41 H4  H 0 1 N N N N N N -10.456 12.273 49.871 3.397  3.849  0.526  H41 YG2 41 
YG2 H40 H5  H 0 1 N N N N N N -10.456 10.670 50.681 3.091  3.410  -1.188 H40 YG2 42 
YG2 H42 H6  H 0 1 N N N N N N -14.045 12.263 51.933 3.524  -0.001 -0.968 H42 YG2 43 
YG2 H43 H7  H 0 1 N N N N N N -13.576 12.945 50.339 3.014  0.094  0.746  H43 YG2 44 
YG2 H10 H8  H 0 1 N N N N N N -12.953 10.043 51.226 1.839  1.456  -1.670 H10 YG2 45 
YG2 H9  H9  H 0 1 N N N N N N -12.560 11.910 48.835 1.664  2.323  1.295  H9  YG2 46 
YG2 H45 H10 H 0 1 N N N N N N -11.845 10.057 47.538 0.025  3.841  0.316  H45 YG2 47 
YG2 H44 H11 H 0 1 N N N N N N -11.654 9.002  48.980 0.543  3.404  -1.347 H44 YG2 48 
YG2 H46 H12 H 0 1 N N N N N N -14.926 9.261  50.238 0.100  -0.009 -1.181 H46 YG2 49 
YG2 H47 H13 H 0 1 N N N N N N -15.202 10.786 49.329 0.393  0.089  0.583  H47 YG2 50 
YG2 H48 H14 H 0 1 N N N N N N -10.351 10.135 53.157 4.395  -0.548 1.075  H48 YG2 51 
YG2 H51 H15 H 0 1 N N N N N N -5.543  10.802 54.621 8.227  -3.750 0.483  H51 YG2 52 
YG2 H53 H16 H 0 1 N N N N N N -11.515 10.632 43.759 -0.686 -2.932 -0.333 H53 YG2 53 
YG2 H54 H17 H 0 1 N N N N N N -10.272 9.838  41.780 -1.851 -5.068 -0.276 H54 YG2 54 
YG2 H55 H18 H 0 1 N N N N N N -10.152 7.414  41.211 -4.301 -5.165 -0.110 H55 YG2 55 
YG2 H56 H19 H 0 1 N N N N N N -11.259 5.747  42.625 -5.625 -3.121 0.004  H56 YG2 56 
YG2 H57 H20 H 0 1 N N N N N N -12.358 4.197  46.466 -6.309 1.190  0.992  H57 YG2 57 
YG2 H58 H21 H 0 1 N N N N N N -13.991 4.011  45.743 -6.431 1.210  -0.783 H58 YG2 58 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YG2 N1  C2  SING N N 1  
YG2 N1  C3  SING N N 2  
YG2 N1  C11 SING N N 3  
YG2 C2  C5  SING N N 4  
YG2 C3  C4  SING N N 5  
YG2 C4  C5  SING N N 6  
YG2 C4  C8  SING N N 7  
YG2 C5  C6  SING N N 8  
YG2 C6  N7  SING N N 9  
YG2 N7  C8  SING N N 10 
YG2 N7  C22 SING N N 11 
YG2 C11 C12 SING N N 12 
YG2 C11 O13 DOUB N N 13 
YG2 C12 C14 DOUB Y N 14 
YG2 C12 C16 SING Y N 15 
YG2 C14 C15 SING Y N 16 
YG2 C15 C18 DOUB Y N 17 
YG2 C16 C17 DOUB Y N 18 
YG2 C17 C18 SING Y N 19 
YG2 C17 N21 SING Y N 20 
YG2 C18 N19 SING Y N 21 
YG2 N19 N20 SING Y N 22 
YG2 N20 N21 DOUB Y N 23 
YG2 C22 C23 SING N N 24 
YG2 C22 O24 DOUB N N 25 
YG2 C23 N25 DOUB Y N 26 
YG2 C23 C27 SING Y N 27 
YG2 N25 C29 SING Y N 28 
YG2 C26 C28 SING Y N 29 
YG2 C26 C27 DOUB Y N 30 
YG2 C26 O34 SING N N 31 
YG2 C28 C29 DOUB Y N 32 
YG2 C28 C33 SING Y N 33 
YG2 C29 C30 SING Y N 34 
YG2 C30 C31 DOUB Y N 35 
YG2 C31 C32 SING Y N 36 
YG2 C32 C33 DOUB Y N 37 
YG2 O34 C35 SING N N 38 
YG2 C35 C36 SING N N 39 
YG2 C36 F37 SING N N 40 
YG2 C36 F38 SING N N 41 
YG2 C36 F39 SING N N 42 
YG2 C15 H49 SING N N 43 
YG2 C16 H50 SING N N 44 
YG2 C27 H52 SING N N 45 
YG2 C2  H41 SING N N 46 
YG2 C2  H40 SING N N 47 
YG2 C3  H42 SING N N 48 
YG2 C3  H43 SING N N 49 
YG2 C4  H10 SING N N 50 
YG2 C5  H9  SING N N 51 
YG2 C6  H45 SING N N 52 
YG2 C6  H44 SING N N 53 
YG2 C8  H46 SING N N 54 
YG2 C8  H47 SING N N 55 
YG2 C14 H48 SING N N 56 
YG2 N19 H51 SING N N 57 
YG2 C30 H53 SING N N 58 
YG2 C31 H54 SING N N 59 
YG2 C32 H55 SING N N 60 
YG2 C33 H56 SING N N 61 
YG2 C35 H57 SING N N 62 
YG2 C35 H58 SING N N 63 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YG2 SMILES           ACDLabs              12.01 "FC(F)(F)COc1cc(nc2ccccc12)C(=O)N1CC2CN(CC2C1)C(=O)c1cc2nn[NH]c2cc1"                                                                                                             
YG2 InChI            InChI                1.06  "InChI=1S/C25H21F3N6O3/c26-25(27,28)13-37-22-8-21(29-18-4-2-1-3-17(18)22)24(36)34-11-15-9-33(10-16(15)12-34)23(35)14-5-6-19-20(7-14)31-32-30-19/h1-8,15-16H,9-13H2,(H,30,31,32)" 
YG2 InChIKey         InChI                1.06  PNENDHTYPWTEAK-UHFFFAOYSA-N                                                                                                                                                      
YG2 SMILES_CANONICAL CACTVS               3.385 "FC(F)(F)COc1cc(nc2ccccc12)C(=O)N3C[C@@H]4CN(C[C@H]4C3)C(=O)c5ccc6[nH]nnc6c5"                                                                                                    
YG2 SMILES           CACTVS               3.385 "FC(F)(F)COc1cc(nc2ccccc12)C(=O)N3C[CH]4CN(C[CH]4C3)C(=O)c5ccc6[nH]nnc6c5"                                                                                                       
YG2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)c(cc(n2)C(=O)N3C[C@@H]4CN(C[C@H]4C3)C(=O)c5ccc6c(c5)nn[nH]6)OCC(F)(F)F"                                                                                              
YG2 SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)c(cc(n2)C(=O)N3CC4CN(CC4C3)C(=O)c5ccc6c(c5)nn[nH]6)OCC(F)(F)F"                                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YG2 "SYSTEMATIC NAME" ACDLabs              12.01 "[(3aR,6aS)-5-(1H-benzotriazole-5-carbonyl)hexahydropyrrolo[3,4-c]pyrrol-2(1H)-yl][4-(2,2,2-trifluoroethoxy)quinolin-2-yl]methanone"                                         
YG2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(3~{a}~{S},6~{a}~{S})-5-[4-[2,2,2-tris(fluoranyl)ethoxy]quinolin-2-yl]carbonyl-1,3,3~{a},4,6,6~{a}-hexahydropyrrolo[3,4-c]pyrrol-2-yl]-(1~{H}-benzotriazol-5-yl)methanone" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YG2 "Create component" 2023-06-13 RCSB 
YG2 "Initial release"  2024-12-18 RCSB 
# 
