data_VN2
# 
_chem_comp.id                                    VN2 
_chem_comp.name                                  "N-[(1S)-2-oxo-1-[3-(trifluoromethyl)phenyl]-2-({4-[4-(trifluoromethyl)phenyl]pyridin-3-yl}amino)ethyl]-4-[4-(trifluoromethyl)phenyl]pyridine-3-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C34 H21 F9 N4 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-09-02 
_chem_comp.pdbx_modified_date                    2023-04-28 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        688.542 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VN2 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8EAB 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VN2 C11 C1  C 0 1 Y N N 13.240 -19.332 21.227 5.493  4.201  1.802  C11 VN2 1  
VN2 C12 C2  C 0 1 Y N N 12.835 -18.133 20.657 5.602  2.825  1.804  C12 VN2 2  
VN2 C13 C3  C 0 1 Y N N 11.482 -17.936 20.388 4.552  2.060  1.290  C13 VN2 3  
VN2 C14 C4  C 0 1 Y N N 11.096 -16.677 19.764 4.625  0.579  1.273  C14 VN2 4  
VN2 C15 C5  C 0 1 Y N N 11.591 -15.470 20.261 5.749  -0.060 0.754  C15 VN2 5  
VN2 C16 C6  C 0 1 Y N N 11.245 -14.259 19.664 5.812  -1.438 0.741  C16 VN2 6  
VN2 C17 C7  C 0 1 Y N N 10.396 -14.239 18.556 4.761  -2.186 1.241  C17 VN2 7  
VN2 C18 C8  C 0 1 Y N N 9.905  -15.447 18.056 3.642  -1.557 1.757  C18 VN2 8  
VN2 C19 C9  C 0 1 Y N N 10.251 -16.660 18.654 3.571  -0.179 1.781  C19 VN2 9  
VN2 C2  C10 C 0 1 N N N 5.040  -18.926 21.798 -2.488 1.832  0.199  C2  VN2 10 
VN2 C20 C11 C 0 1 N N N 10.036 -12.949 17.910 4.835  -3.691 1.224  C20 VN2 11 
VN2 C24 C12 C 0 1 Y N N 6.690  -16.990 20.007 0.093  1.395  -1.594 C24 VN2 12 
VN2 C25 C13 C 0 1 Y N N 6.577  -15.685 20.506 -0.222 2.346  -2.547 C25 VN2 13 
VN2 C26 C14 C 0 1 Y N N 6.230  -14.621 19.669 -0.067 2.057  -3.890 C26 VN2 14 
VN2 C27 C15 C 0 1 Y N N 5.994  -14.851 18.313 0.403  0.816  -4.280 C27 VN2 15 
VN2 C28 C16 C 0 1 Y N N 6.107  -16.146 17.802 0.717  -0.135 -3.327 C28 VN2 16 
VN2 C29 C17 C 0 1 Y N N 6.451  -17.202 18.647 0.568  0.157  -1.984 C29 VN2 17 
VN2 C30 C18 C 0 1 N N N 5.865  -16.436 16.365 1.228  -1.487 -3.753 C30 VN2 18 
VN2 C34 C19 C 0 1 Y N N 4.005  -18.880 22.834 -3.732 2.602  0.396  C34 VN2 19 
VN2 C35 C20 C 0 1 Y N N 4.348  -19.071 24.158 -3.727 3.994  0.307  C35 VN2 20 
VN2 C37 C21 C 0 1 Y N N 2.148  -18.894 24.805 -5.991 4.098  0.747  C37 VN2 21 
VN2 C38 C22 C 0 1 Y N N 1.716  -18.691 23.504 -6.092 2.726  0.849  C38 VN2 22 
VN2 C39 C23 C 0 1 Y N N 2.667  -18.686 22.492 -4.949 1.944  0.672  C39 VN2 23 
VN2 C4  C24 C 0 1 N N S 7.067  -18.168 20.885 -0.077 1.710  -0.130 C4  VN2 24 
VN2 C40 C25 C 0 1 Y N N 2.220  -18.444 21.138 -5.012 0.467  0.771  C40 VN2 25 
VN2 C41 C26 C 0 1 Y N N 1.280  -19.289 20.546 -4.207 -0.208 1.688  C41 VN2 26 
VN2 C42 C27 C 0 1 Y N N 0.855  -19.048 19.240 -4.270 -1.584 1.776  C42 VN2 27 
VN2 C43 C28 C 0 1 Y N N 1.379  -17.972 18.528 -5.130 -2.293 0.956  C43 VN2 28 
VN2 C44 C29 C 0 1 Y N N 2.318  -17.128 19.119 -5.931 -1.628 0.045  C44 VN2 29 
VN2 C45 C30 C 0 1 Y N N 2.735  -17.361 20.427 -5.881 -0.253 -0.048 C45 VN2 30 
VN2 C46 C31 C 0 1 N N N 0.929  -17.701 17.141 -5.189 -3.796 1.053  C46 VN2 31 
VN2 C5  C32 C 0 1 N N N 8.493  -18.119 21.337 1.099  2.523  0.348  C5  VN2 32 
VN2 C8  C33 C 0 1 Y N N 10.611 -18.981 20.707 3.425  2.733  0.792  C8  VN2 33 
VN2 C9  C34 C 0 1 Y N N 11.106 -20.150 21.248 3.402  4.119  0.829  C9  VN2 34 
VN2 F21 F1  F 0 1 N N N 9.463  -12.048 18.751 5.417  -4.143 2.413  F21 VN2 35 
VN2 F22 F2  F 0 1 N N N 11.144 -12.336 17.399 3.546  -4.220 1.105  F22 VN2 36 
VN2 F23 F3  F 0 1 N N N 9.171  -13.102 16.867 5.612  -4.107 0.137  F23 VN2 37 
VN2 F31 F4  F 0 1 N N N 5.145  -15.472 15.735 1.298  -1.541 -5.149 F31 VN2 38 
VN2 F32 F5  F 0 1 N N N 7.020  -16.561 15.662 2.502  -1.695 -3.213 F32 VN2 39 
VN2 F33 F6  F 0 1 N N N 5.195  -17.603 16.173 0.359  -2.481 -3.290 F33 VN2 40 
VN2 F47 F7  F 0 1 N N N 0.971  -18.796 16.342 -6.473 -4.234 0.710  F47 VN2 41 
VN2 F48 F8  F 0 1 N N N -0.369 -17.296 17.148 -4.255 -4.357 0.175  F48 VN2 42 
VN2 F49 F9  F 0 1 N N N 1.645  -16.703 16.543 -4.895 -4.191 2.362  F49 VN2 43 
VN2 N10 N1  N 0 1 Y N N 12.408 -20.356 21.523 4.418  4.798  1.324  N10 VN2 44 
VN2 N3  N2  N 0 1 N N N 6.245  -18.351 22.048 -1.311 2.475  0.065  N3  VN2 45 
VN2 N36 N3  N 0 1 Y N N 3.443  -19.073 25.160 -4.836 4.682  0.482  N36 VN2 46 
VN2 N7  N4  N 0 1 N N N 9.239  -18.983 20.547 2.345  2.018  0.266  N7  VN2 47 
VN2 O1  O1  O 0 1 N N N 4.745  -19.436 20.734 -2.525 0.617  0.159  O1  VN2 48 
VN2 O6  O2  O 0 1 N N N 8.886  -17.262 22.115 0.923  3.632  0.806  O6  VN2 49 
VN2 H1  H1  H 0 1 N N N 14.290 -19.455 21.449 6.299  4.798  2.201  H1  VN2 50 
VN2 H2  H2  H 0 1 N N N 13.558 -17.364 20.425 6.486  2.346  2.197  H2  VN2 51 
VN2 H3  H3  H 0 1 N N N 12.249 -15.475 21.117 6.570  0.523  0.363  H3  VN2 52 
VN2 H4  H4  H 0 1 N N N 11.635 -13.333 20.060 6.683  -1.934 0.340  H4  VN2 53 
VN2 H5  H5  H 0 1 N N N 9.250  -15.443 17.197 2.824  -2.146 2.145  H5  VN2 54 
VN2 H6  H6  H 0 1 N N N 9.864  -17.587 18.257 2.697  0.311  2.184  H6  VN2 55 
VN2 H7  H7  H 0 1 N N N 6.761  -15.499 21.554 -0.589 3.315  -2.243 H7  VN2 56 
VN2 H8  H8  H 0 1 N N N 6.145  -13.622 20.071 -0.313 2.799  -4.634 H8  VN2 57 
VN2 H9  H9  H 0 1 N N N 5.725  -14.032 17.662 0.524  0.590  -5.329 H9  VN2 58 
VN2 H10 H10 H 0 1 N N N 6.534  -18.200 18.243 0.813  -0.586 -1.240 H10 VN2 59 
VN2 H11 H11 H 0 1 N N N 5.388  -19.226 24.403 -2.805 4.513  0.092  H11 VN2 60 
VN2 H12 H12 H 0 1 N N N 1.403  -18.911 25.587 -6.873 4.707  0.883  H12 VN2 61 
VN2 H13 H13 H 0 1 N N N 0.669  -18.541 23.283 -7.043 2.263  1.066  H13 VN2 62 
VN2 H14 H14 H 0 1 N N N 6.963  -19.068 20.262 -0.131 0.781  0.437  H14 VN2 63 
VN2 H15 H15 H 0 1 N N N 0.883  -20.128 21.098 -3.535 0.345  2.328  H15 VN2 64 
VN2 H16 H16 H 0 1 N N N 0.121  -19.694 18.782 -3.647 -2.108 2.485  H16 VN2 65 
VN2 H17 H17 H 0 1 N N N 2.721  -16.295 18.563 -6.600 -2.188 -0.592 H17 VN2 66 
VN2 H18 H18 H 0 1 N N N 3.456  -16.704 20.890 -6.507 0.265  -0.760 H18 VN2 67 
VN2 H19 H19 H 0 1 N N N 10.409 -20.946 21.463 2.541  4.649  0.449  H19 VN2 68 
VN2 H20 H20 H 0 1 N N N 6.535  -18.078 22.965 -1.281 3.444  0.097  H20 VN2 69 
VN2 H21 H21 H 0 1 N N N 8.797  -19.587 19.884 2.493  1.158  -0.159 H21 VN2 70 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VN2 F32 C30 SING N N 1  
VN2 F31 C30 SING N N 2  
VN2 F33 C30 SING N N 3  
VN2 F47 C46 SING N N 4  
VN2 C30 C28 SING N N 5  
VN2 F49 C46 SING N N 6  
VN2 F23 C20 SING N N 7  
VN2 C46 F48 SING N N 8  
VN2 C46 C43 SING N N 9  
VN2 F22 C20 SING N N 10 
VN2 C28 C27 DOUB Y N 11 
VN2 C28 C29 SING Y N 12 
VN2 C20 C17 SING N N 13 
VN2 C20 F21 SING N N 14 
VN2 C18 C17 DOUB Y N 15 
VN2 C18 C19 SING Y N 16 
VN2 C27 C26 SING Y N 17 
VN2 C43 C44 DOUB Y N 18 
VN2 C43 C42 SING Y N 19 
VN2 C17 C16 SING Y N 20 
VN2 C29 C24 DOUB Y N 21 
VN2 C19 C14 DOUB Y N 22 
VN2 C44 C45 SING Y N 23 
VN2 C42 C41 DOUB Y N 24 
VN2 C16 C15 DOUB Y N 25 
VN2 C26 C25 DOUB Y N 26 
VN2 C14 C15 SING Y N 27 
VN2 C14 C13 SING N N 28 
VN2 C24 C25 SING Y N 29 
VN2 C24 C4  SING N N 30 
VN2 C13 C12 DOUB Y N 31 
VN2 C13 C8  SING Y N 32 
VN2 C45 C40 DOUB Y N 33 
VN2 C41 C40 SING Y N 34 
VN2 N7  C8  SING N N 35 
VN2 N7  C5  SING N N 36 
VN2 C12 C11 SING Y N 37 
VN2 C8  C9  DOUB Y N 38 
VN2 O1  C2  DOUB N N 39 
VN2 C4  C5  SING N N 40 
VN2 C4  N3  SING N N 41 
VN2 C40 C39 SING N N 42 
VN2 C11 N10 DOUB Y N 43 
VN2 C9  N10 SING Y N 44 
VN2 C5  O6  DOUB N N 45 
VN2 C2  N3  SING N N 46 
VN2 C2  C34 SING N N 47 
VN2 C39 C34 DOUB Y N 48 
VN2 C39 C38 SING Y N 49 
VN2 C34 C35 SING Y N 50 
VN2 C38 C37 DOUB Y N 51 
VN2 C35 N36 DOUB Y N 52 
VN2 C37 N36 SING Y N 53 
VN2 C11 H1  SING N N 54 
VN2 C12 H2  SING N N 55 
VN2 C15 H3  SING N N 56 
VN2 C16 H4  SING N N 57 
VN2 C18 H5  SING N N 58 
VN2 C19 H6  SING N N 59 
VN2 C25 H7  SING N N 60 
VN2 C26 H8  SING N N 61 
VN2 C27 H9  SING N N 62 
VN2 C29 H10 SING N N 63 
VN2 C35 H11 SING N N 64 
VN2 C37 H12 SING N N 65 
VN2 C38 H13 SING N N 66 
VN2 C4  H14 SING N N 67 
VN2 C41 H15 SING N N 68 
VN2 C42 H16 SING N N 69 
VN2 C44 H17 SING N N 70 
VN2 C45 H18 SING N N 71 
VN2 C9  H19 SING N N 72 
VN2 N3  H20 SING N N 73 
VN2 N7  H21 SING N N 74 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VN2 SMILES           ACDLabs              12.01 "O=C(Nc1cnccc1c1ccc(cc1)C(F)(F)F)C(NC(=O)c1cnccc1c1ccc(cc1)C(F)(F)F)c1cccc(c1)C(F)(F)F"                                                                                                                                   
VN2 InChI            InChI                1.06  "InChI=1S/C34H21F9N4O2/c35-32(36,37)22-8-4-19(5-9-22)25-12-14-44-17-27(25)30(48)47-29(21-2-1-3-24(16-21)34(41,42)43)31(49)46-28-18-45-15-13-26(28)20-6-10-23(11-7-20)33(38,39)40/h1-18,29H,(H,46,49)(H,47,48)/t29-/m0/s1" 
VN2 InChIKey         InChI                1.06  BXBAJPGXWPVCNU-LJAQVGFWSA-N                                                                                                                                                                                               
VN2 SMILES_CANONICAL CACTVS               3.385 "FC(F)(F)c1ccc(cc1)c2ccncc2NC(=O)[C@@H](NC(=O)c3cnccc3c4ccc(cc4)C(F)(F)F)c5cccc(c5)C(F)(F)F"                                                                                                                              
VN2 SMILES           CACTVS               3.385 "FC(F)(F)c1ccc(cc1)c2ccncc2NC(=O)[CH](NC(=O)c3cnccc3c4ccc(cc4)C(F)(F)F)c5cccc(c5)C(F)(F)F"                                                                                                                                
VN2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)C(F)(F)F)[C@@H](C(=O)Nc2cnccc2c3ccc(cc3)C(F)(F)F)NC(=O)c4cnccc4c5ccc(cc5)C(F)(F)F"                                                                                                                            
VN2 SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)C(F)(F)F)C(C(=O)Nc2cnccc2c3ccc(cc3)C(F)(F)F)NC(=O)c4cnccc4c5ccc(cc5)C(F)(F)F"                                                                                                                                 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
VN2 "SYSTEMATIC NAME" ACDLabs              12.01 "N-[(1S)-2-oxo-1-[3-(trifluoromethyl)phenyl]-2-({4-[4-(trifluoromethyl)phenyl]pyridin-3-yl}amino)ethyl]-4-[4-(trifluoromethyl)phenyl]pyridine-3-carboxamide"                 
VN2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(1~{S})-2-oxidanylidene-1-[3-(trifluoromethyl)phenyl]-2-[[4-[4-(trifluoromethyl)phenyl]pyridin-3-yl]amino]ethyl]-4-[4-(trifluoromethyl)phenyl]pyridine-3-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VN2 "Create component" 2022-09-02 RCSB 
VN2 "Initial release"  2023-05-03 RCSB 
# 
