data_UH2
# 
_chem_comp.id                                    UH2 
_chem_comp.name                                  "(2~{S})-2-azanyl-4-[[(2~{S},3~{S},4~{R},5~{R})-5-[4-azanyl-5-[2-(1~{H}-benzimidazol-2-yl)ethynyl]pyrrolo[2,3-d]pyrimidin-7-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanyl]butanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H25 N7 O5 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-02-03 
_chem_comp.pdbx_modified_date                    2023-03-31 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        523.564 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     UH2 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8CES 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
UH2 N   N1  N 0 1 N N N 18.479 13.581 41.541 7.892  -2.857 0.872  N   UH2 1  
UH2 CA  C1  C 0 1 N N S 19.873 13.309 41.032 6.768  -3.365 0.074  CA  UH2 2  
UH2 C   C2  C 0 1 N N N 19.856 12.233 39.932 7.287  -4.299 -0.988 C   UH2 3  
UH2 O   O1  O 0 1 N N N 18.816 12.105 39.261 8.449  -4.253 -1.318 O   UH2 4  
UH2 CB  C3  C 0 1 N N N 20.874 12.854 42.114 6.042  -2.192 -0.589 CB  UH2 5  
UH2 OXT O2  O 0 1 N N N 20.912 11.567 39.775 6.460  -5.182 -1.568 OXT UH2 6  
UH2 C10 C4  C 0 1 Y N N 21.398 22.399 43.831 -2.488 5.221  -1.549 C10 UH2 7  
UH2 C12 C5  C 0 1 Y N N 22.502 20.931 45.072 -1.343 3.408  -0.714 C12 UH2 8  
UH2 C13 C6  C 0 1 Y N N 22.638 21.844 46.129 -2.536 2.668  -0.748 C13 UH2 9  
UH2 C14 C7  C 0 1 Y N N 23.397 21.176 47.150 -2.200 1.326  -0.246 C14 UH2 10 
UH2 C15 C8  C 0 1 N N N 23.850 21.804 48.355 -3.093 0.217  -0.095 C15 UH2 11 
UH2 C16 C9  C 0 1 N N N 24.257 22.428 49.293 -3.825 -0.692 0.028  C16 UH2 12 
UH2 C17 C10 C 0 1 Y N N 24.779 23.284 50.282 -4.718 -1.801 0.179  C17 UH2 13 
UH2 C19 C11 C 0 1 Y N N 25.101 25.129 51.451 -5.510 -3.820 0.641  C19 UH2 14 
UH2 C20 C12 C 0 1 Y N N 25.914 24.101 51.920 -6.542 -3.000 0.151  C20 UH2 15 
UH2 C22 C13 C 0 1 Y N N 26.756 24.332 53.005 -7.834 -3.523 0.026  C22 UH2 16 
UH2 C23 C14 C 0 1 Y N N 26.764 25.589 53.591 -8.081 -4.819 0.379  C23 UH2 17 
UH2 C24 C15 C 0 1 Y N N 25.947 26.607 53.109 -7.062 -5.627 0.863  C24 UH2 18 
UH2 C25 C16 C 0 1 Y N N 25.104 26.390 52.030 -5.781 -5.134 0.995  C25 UH2 19 
UH2 C26 C17 C 0 1 Y N N 23.676 19.919 46.678 -0.868 1.349  0.048  C26 UH2 20 
UH2 C28 C18 C 0 1 N N R 23.238 18.601 44.553 1.038  2.975  -0.038 C28 UH2 21 
UH2 C29 C19 C 0 1 N N R 24.620 17.977 44.448 1.237  3.589  1.365  C29 UH2 22 
UH2 C31 C20 C 0 1 N N S 24.275 16.548 43.997 2.628  3.080  1.804  C31 UH2 23 
UH2 C33 C21 C 0 1 N N S 22.794 16.386 44.362 3.105  2.218  0.614  C33 UH2 24 
UH2 C35 C22 C 0 1 N N N 22.530 15.173 45.236 3.873  0.994  1.117  C35 UH2 25 
UH2 C37 C23 C 0 1 N N N 21.141 13.902 43.185 5.408  -1.310 0.489  C37 UH2 26 
UH2 C8  C24 C 0 1 Y N N 22.070 23.124 45.914 -3.703 3.290  -1.210 C8  UH2 27 
UH2 N11 N2  N 0 1 Y N N 21.886 21.161 43.908 -1.369 4.675  -1.123 N11 UH2 28 
UH2 N18 N3  N 0 1 Y N N 24.384 24.588 50.402 -4.367 -3.041 0.652  N18 UH2 29 
UH2 N21 N4  N 0 1 Y N N 25.697 22.942 51.172 -6.002 -1.786 -0.111 N21 UH2 30 
UH2 N27 N5  N 0 1 Y N N 23.141 19.766 45.419 -0.361 2.584  -0.230 N27 UH2 31 
UH2 N7  N6  N 0 1 N N N 22.123 24.104 46.797 -4.901 2.600  -1.261 N7  UH2 32 
UH2 N9  N7  N 0 1 Y N N 21.451 23.369 44.741 -3.630 4.560  -1.597 N9  UH2 33 
UH2 O30 O3  O 0 1 N N N 25.446 18.644 43.498 1.223  5.017  1.293  O30 UH2 34 
UH2 O32 O4  O 0 1 N N N 24.422 16.412 42.586 3.519  4.178  2.016  O32 UH2 35 
UH2 O34 O5  O 0 1 N N N 22.419 17.582 45.072 1.892  1.810  -0.055 O34 UH2 36 
UH2 S36 S1  S 0 1 N N N 22.606 13.659 44.235 4.547  0.080  -0.297 S36 UH2 37 
UH2 H1  H1  H 0 1 N N N 18.515 14.282 42.253 8.348  -3.605 1.371  H1  UH2 38 
UH2 H2  H2  H 0 1 N N N 17.906 13.901 40.787 8.549  -2.355 0.293  H2  UH2 39 
UH2 H4  H4  H 0 1 N N N 20.261 14.237 40.587 6.075  -3.901 0.722  H4  UH2 40 
UH2 H5  H5  H 0 1 N N N 20.471 11.954 42.602 6.755  -1.604 -1.167 H5  UH2 41 
UH2 H6  H6  H 0 1 N N N 21.828 12.609 41.623 5.264  -2.573 -1.250 H6  UH2 42 
UH2 H7  H7  H 0 1 N N N 20.794 10.949 39.063 6.839  -5.761 -2.244 H7  UH2 43 
UH2 H8  H8  H 0 1 N N N 20.893 22.648 42.909 -2.472 6.253  -1.869 H8  UH2 44 
UH2 H9  H9  H 0 1 N N N 27.392 23.546 53.384 -8.634 -2.902 -0.349 H9  UH2 45 
UH2 H10 H10 H 0 1 N N N 27.413 25.780 54.433 -9.080 -5.219 0.282  H10 UH2 46 
UH2 H11 H11 H 0 1 N N N 25.970 27.578 53.581 -7.274 -6.650 1.138  H11 UH2 47 
UH2 H12 H12 H 0 1 N N N 24.469 27.178 51.652 -4.992 -5.768 1.372  H12 UH2 48 
UH2 H13 H13 H 0 1 N N N 24.232 19.163 47.213 -0.302 0.518  0.441  H13 UH2 49 
UH2 H14 H14 H 0 1 N N N 22.902 18.873 43.541 1.343  3.681  -0.811 H14 UH2 50 
UH2 H15 H15 H 0 1 N N N 25.095 17.948 45.440 0.467  3.235  2.050  H15 UH2 51 
UH2 H16 H16 H 0 1 N N N 24.886 15.817 44.547 2.546  2.474  2.706  H16 UH2 52 
UH2 H17 H17 H 0 1 N N N 22.207 16.296 43.436 3.729  2.809  -0.057 H17 UH2 53 
UH2 H18 H18 H 0 1 N N N 21.531 15.261 45.689 4.689  1.318  1.763  H18 UH2 54 
UH2 H19 H19 H 0 1 N N N 23.290 15.124 46.030 3.199  0.348  1.680  H19 UH2 55 
UH2 H20 H20 H 0 1 N N N 21.253 14.872 42.679 4.695  -1.899 1.067  H20 UH2 56 
UH2 H21 H21 H 0 1 N N N 20.262 13.933 43.845 6.186  -0.929 1.150  H21 UH2 57 
UH2 H22 H22 H 0 1 N N N 23.706 25.059 49.838 -3.484 -3.319 0.940  H22 UH2 58 
UH2 H24 H24 H 0 1 N N N 21.668 24.913 46.425 -4.940 1.674  -0.975 H24 UH2 59 
UH2 H25 H25 H 0 1 N N N 21.663 23.820 47.638 -5.702 3.043  -1.582 H25 UH2 60 
UH2 H26 H26 H 0 1 N N N 25.640 19.521 43.807 1.344  5.455  2.146  H26 UH2 61 
UH2 H27 H27 H 0 1 N N N 25.337 16.511 42.352 3.267  4.752  2.752  H27 UH2 62 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
UH2 O   C   DOUB N N 1  
UH2 OXT C   SING N N 2  
UH2 C   CA  SING N N 3  
UH2 CA  N   SING N N 4  
UH2 CA  CB  SING N N 5  
UH2 CB  C37 SING N N 6  
UH2 O32 C31 SING N N 7  
UH2 C37 S36 SING N N 8  
UH2 O30 C29 SING N N 9  
UH2 C10 N11 DOUB Y N 10 
UH2 C10 N9  SING Y N 11 
UH2 N11 C12 SING Y N 12 
UH2 C31 C33 SING N N 13 
UH2 C31 C29 SING N N 14 
UH2 S36 C35 SING N N 15 
UH2 C33 O34 SING N N 16 
UH2 C33 C35 SING N N 17 
UH2 C29 C28 SING N N 18 
UH2 C28 O34 SING N N 19 
UH2 C28 N27 SING N N 20 
UH2 N9  C8  DOUB Y N 21 
UH2 C12 N27 SING Y N 22 
UH2 C12 C13 DOUB Y N 23 
UH2 N27 C26 SING Y N 24 
UH2 C8  C13 SING Y N 25 
UH2 C8  N7  SING N N 26 
UH2 C13 C14 SING Y N 27 
UH2 C26 C14 DOUB Y N 28 
UH2 C14 C15 SING N N 29 
UH2 C15 C16 TRIP N N 30 
UH2 C16 C17 SING N N 31 
UH2 C17 N18 SING Y N 32 
UH2 C17 N21 DOUB Y N 33 
UH2 N18 C19 SING Y N 34 
UH2 N21 C20 SING Y N 35 
UH2 C19 C20 DOUB Y N 36 
UH2 C19 C25 SING Y N 37 
UH2 C20 C22 SING Y N 38 
UH2 C25 C24 DOUB Y N 39 
UH2 C22 C23 DOUB Y N 40 
UH2 C24 C23 SING Y N 41 
UH2 N   H1  SING N N 42 
UH2 N   H2  SING N N 43 
UH2 CA  H4  SING N N 44 
UH2 CB  H5  SING N N 45 
UH2 CB  H6  SING N N 46 
UH2 OXT H7  SING N N 47 
UH2 C10 H8  SING N N 48 
UH2 C22 H9  SING N N 49 
UH2 C23 H10 SING N N 50 
UH2 C24 H11 SING N N 51 
UH2 C25 H12 SING N N 52 
UH2 C26 H13 SING N N 53 
UH2 C28 H14 SING N N 54 
UH2 C29 H15 SING N N 55 
UH2 C31 H16 SING N N 56 
UH2 C33 H17 SING N N 57 
UH2 C35 H18 SING N N 58 
UH2 C35 H19 SING N N 59 
UH2 C37 H20 SING N N 60 
UH2 C37 H21 SING N N 61 
UH2 N18 H22 SING N N 62 
UH2 N7  H24 SING N N 63 
UH2 N7  H25 SING N N 64 
UH2 O30 H26 SING N N 65 
UH2 O32 H27 SING N N 66 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
UH2 InChI            InChI                1.06  "InChI=1S/C24H25N7O5S/c25-13(24(34)35)7-8-37-10-16-19(32)20(33)23(36-16)31-9-12(18-21(26)27-11-28-22(18)31)5-6-17-29-14-3-1-2-4-15(14)30-17/h1-4,9,11,13,16,19-20,23,32-33H,7-8,10,25H2,(H,29,30)(H,34,35)(H2,26,27,28)/t13-,16+,19+,20+,23+/m0/s1" 
UH2 InChIKey         InChI                1.06  PYEFDSOFRINBSR-IMYLTZEYSA-N                                                                                                                                                                                                                         
UH2 SMILES_CANONICAL CACTVS               3.385 "N[C@@H](CCSC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cc(C#Cc3[nH]c4ccccc4n3)c5c(N)ncnc25)C(O)=O"                                                                                                                                                            
UH2 SMILES           CACTVS               3.385 "N[CH](CCSC[CH]1O[CH]([CH](O)[CH]1O)n2cc(C#Cc3[nH]c4ccccc4n3)c5c(N)ncnc25)C(O)=O"                                                                                                                                                                   
UH2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)[nH]c(n2)C#Cc3cn(c4c3c(ncn4)N)[C@H]5[C@@H]([C@@H]([C@H](O5)CSCC[C@@H](C(=O)O)N)O)O"                                                                                                                                                     
UH2 SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)[nH]c(n2)C#Cc3cn(c4c3c(ncn4)N)C5C(C(C(O5)CSCCC(C(=O)O)N)O)O"                                                                                                                                                                            
# 
_pdbx_chem_comp_identifier.comp_id           UH2 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S})-2-azanyl-4-[[(2~{S},3~{S},4~{R},5~{R})-5-[4-azanyl-5-[2-(1~{H}-benzimidazol-2-yl)ethynyl]pyrrolo[2,3-d]pyrimidin-7-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanyl]butanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
UH2 "Create component" 2023-02-03 PDBE 
UH2 "Initial release"  2023-04-05 RCSB 
# 
