data_S12
#

_chem_comp.id                                   S12
_chem_comp.name                                 "O-[(S)-hydroxy{[(2S)-2-hydroxy-3-(octadec-9-enoyloxy)propyl]oxy}phosphoryl]-L-serine"
_chem_comp.type                                 "L-PEPTIDE LINKING"
_chem_comp.pdbx_type                            ATOMP
_chem_comp.formula                              "C24 H46 N O9 P"
_chem_comp.mon_nstd_parent_comp_id              SER
_chem_comp.pdbx_synonyms                        1-oleoyl-2-hydroxy-sn-glycero-3-phospho-L-serine
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2012-03-29
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       523.597
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    S12
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4EAX
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
S12  C     C     C  0  1  N  N  N   5.641   9.475   -2.115   12.977  -1.245   1.233  C     S12   1  
S12  N     N     N  0  1  N  N  N   5.256   9.744   -4.478   11.896   0.905   0.896  N     S12   2  
S12  P     P     P  0  1  N  N  N   7.702   6.741   -5.451    8.225  -0.914  -0.711  P     S12   3  
S12  OG    OG    O  0  1  N  N  N   7.043   7.828   -4.450    9.451  -0.506   0.249  O1    S12   4  
S12  C2    C2    C  0  1  N  N  N   6.885   6.025   -7.933    5.622  -0.326  -0.858  C2    S12   5  
S12  O2    O2    O  0  1  N  N  N   6.647   6.678   -6.683    6.905  -0.106  -0.266  O2    S12   6  
S12  C3    C3    C  0  1  N  N  S   5.907   6.589   -8.973    4.595   0.602  -0.206  C3    S12   7  
S12  O3    O3    O  0  1  N  N  N   7.738   5.416   -4.734    7.974  -2.368  -0.601  O3    S12   8  
S12  C4    C4    C  0  1  N  N  N   6.046   5.890  -10.342    3.201   0.282  -0.750  C4    S12   9  
S12  O4    O4    O  0  1  N  N  N   9.146   7.455   -6.055    8.591  -0.546  -2.235  O4    S12  10  
S12  C5    C5    C  0  1  N  N  N   4.785   5.778  -12.548    0.929   0.916  -0.407  C5    S12  11  
S12  C6    C6    C  0  1  N  N  N   4.166   6.481  -13.750   -0.153   1.710   0.278  C6    S12  12  
S12  C7    C7    C  0  1  N  N  N   4.952   6.494  -15.057   -1.513   1.337  -0.316  C7    S12  13  
S12  C8    C8    C  0  1  N  N  N   4.370   7.106  -16.110   -2.611   2.143   0.380  C8    S12  14  
S12  C9    C9    C  0  1  N  N  N   4.995   7.241  -17.498   -3.971   1.770  -0.214  C9    S12  15  
S12  CA    CA    C  0  1  N  N  S   5.111   8.824   -3.363   11.663  -0.508   1.224  CA    S12  16  
S12  CB    CB    C  0  1  N  N  N   5.868   7.537   -3.684   10.736  -1.129   0.177  CB    S12  17  
S12  C10   C10   C  0  1  N  N  N   4.069   7.801  -18.582   -5.070   2.576   0.481  C10   S12  18  
S12  C11   C11   C  0  1  N  N  N   4.613   8.185  -19.743   -6.430   2.203  -0.113  C11   S12  19  
S12  O11   O11   O  0  1  N  N  N   6.138   8.009   -9.062    4.922   1.961  -0.506  O11   S12  20  
S12  C12   C12   C  0  1  N  N  N   6.064   8.007  -19.767   -7.529   3.009   0.583  C12   S12  21  
S12  C13   C13   C  0  1  N  N  N   6.809   8.294  -20.735   -8.868   2.642  -0.002  C13   S12  22  
S12  C14   C14   C  0  1  N  N  N   7.598   8.568  -21.677   -9.833   2.228   0.781  C14   S12  23  
S12  O51   O51   O  0  1  N  N  N   4.832   4.555  -12.525    0.643   0.132  -1.281  O51   S12  24  
S12  O52   O52   O  0  1  N  N  N   5.264   6.523  -11.370    2.212   1.079  -0.047  O52   S12  25  
S12  O     O     O  0  1  N  N  N   4.872   9.589   -1.128   13.933  -0.783   0.657  OT1   S12  26  
S12  OXT   OXT   O  0  1  N  Y  N   6.993   9.942   -2.101   13.086  -2.414   1.885  OT2   S12  27  
S12  H     H     H  0  1  N  N  N   4.905   9.317   -5.311   12.325   0.998  -0.013  HN    S12  28  
S12  H2    H2    H  0  1  N  Y  N   4.740  10.580   -4.290   11.039   1.435   0.947  HNA   S12  29  
S12  H2B   H2B   H  0  1  N  N  N   7.919   6.211   -8.258    5.674  -0.117  -1.926  H2    S12  30  
S12  H2A   H2A   H  0  1  N  N  N   6.725   4.942   -7.822    5.324  -1.363  -0.704  H2A   S12  31  
S12  H3    H3    H  0  1  N  N  N   4.885   6.412   -8.607    4.606   0.456   0.874  H3    S12  32  
S12  H4    H4    H  0  1  N  N  N   7.104   5.910  -10.642    3.164   0.513  -1.814  H4    S12  33  
S12  H4A   H4A   H  0  1  N  N  N   5.714   4.846  -10.240    2.987  -0.777  -0.600  H4A   S12  34  
S12  H6    H6    H  0  1  N  N  N   3.202   5.992  -13.953   -0.148   1.485   1.345  H6    S12  35  
S12  H6A   H6A   H  0  1  N  N  N   3.993   7.529  -13.462    0.029   2.774   0.130  H6A   S12  36  
S12  H7    H7    H  0  1  N  N  N   5.909   7.001  -14.865   -1.517   1.562  -1.383  H7    S12  37  
S12  H8    H8    H  0  1  N  N  N   3.418   6.578  -16.267   -2.607   1.918   1.446  H8    S12  38  
S12  H9    H9    H  0  1  N  N  N   5.865   7.910  -17.415   -3.976   1.995  -1.281  H9    S12  39  
S12  H9A   H9A   H  0  1  N  N  N   5.329   6.243  -17.819   -4.153   0.705  -0.067  H9A   S12  40  
S12  HA    HA    H  0  1  N  N  N   4.048   8.582   -3.217   11.199  -0.580   2.208  HA    S12  41  
S12  HB2   HB2   H  0  1  N  N  N   5.215   6.867   -4.262   10.633  -2.197   0.370  HB    S12  42  
S12  HB3   HB3   H  0  1  N  N  N   6.160   7.044   -2.745   11.158  -0.978  -0.816  HBA   S12  43  
S12  H10   H10   H  0  1  N  N  N   3.327   7.022  -18.811   -5.065   2.351   1.548  H10   S12  44  
S12  H11   H11   H  0  1  N  N  N   4.171   7.588  -20.554   -6.434   2.428  -1.179  H11   S12  45  
S12  HO11  HO11  H  0  0  N  N  N   5.545   8.387   -9.700    4.931   2.164  -1.451  HO11  S12  46  
S12  H12   H12   H  0  1  N  N  N   6.445   8.595  -18.919   -7.524   2.784   1.650  H12   S12  47  
S12  H14   H14   H  0  1  N  N  N   8.047   9.548  -21.738   -9.670   2.151   1.845  H14   S12  48  
S12  C15   C15   C  0  1  N  N  N   7.826   7.823  -22.424  -11.173   1.861   0.196  C17   S12  49  
S12  C16   C16   C  0  1  N  N  N   8.977   7.799  -23.826  -11.540   0.437   0.617  C18   S12  50  
S12  C17   C17   C  0  1  N  N  N   9.303   6.736  -24.892  -12.900   0.064   0.022  C19   S12  51  
S12  C18   C18   C  0  1  N  N  N  10.357   7.029  -25.976  -13.267  -1.360   0.443  C20   S12  52  
S12  C19   C19   C  0  1  N  N  N  10.682   5.966  -27.042  -14.627  -1.733  -0.151  C21   S12  53  
S12  C20   C20   C  0  1  N  N  N  11.737   6.260  -28.125  -14.994  -3.158   0.270  C22   S12  54  
S12  C21   C21   C  0  1  N  N  N  12.062   5.197  -29.191  -16.354  -3.530  -0.324  C23   S12  55  
S12  C22   C22   C  0  1  N  N  N  13.116   5.490  -30.274  -16.721  -4.955   0.097  C24   S12  56  
S12  H22   H22   H  0  1  N  N  N   9.885   6.892   -5.858    8.768   0.393  -2.381  H22   S12  57  
S12  H23   H23   H  0  1  N  N  N   5.141   5.449  -15.342   -1.694   0.272  -0.169  H23   S12  58  
S12  H24   H24   H  0  1  N  N  N   4.169   8.135  -15.777   -2.430   3.207   0.232  H24   S12  59  
S12  H25   H25   H  0  1  N  N  N   3.560   8.678  -18.155   -4.889   3.640   0.334  H25   S12  60  
S12  H26   H26   H  0  1  N  N  N   4.385   9.249  -19.905   -6.611   1.138   0.035  H26   S12  61  
S12  H27   H27   H  0  1  N  N  N   6.231   6.937  -19.576   -7.347   4.074   0.435  H27   S12  62  
S12  H28   H28   H  0  1  N  N  N   5.958   8.580  -21.335   -9.031   2.719  -1.067  H28   S12  63  
S12  HXT   HXT   H  0  1  N  Y  N   7.186  10.330   -1.256   13.949  -2.850   1.862  H29   S12  64  
S12  H30   H30   H  0  1  N  N  N   8.132   6.950  -21.828  -11.931   2.555   0.560  H30   S12  65  
S12  H31   H31   H  0  1  N  N  N   6.850   7.624  -22.892  -11.122   1.917  -0.892  H31   S12  66  
S12  H32   H32   H  0  1  N  N  N   8.671   8.672  -24.422  -10.782  -0.257   0.252  H32   S12  67  
S12  H33   H33   H  0  1  N  N  N   9.952   7.998  -23.358  -11.591   0.381   1.704  H33   S12  68  
S12  H34   H34   H  0  1  N  N  N   9.643   5.840  -24.353  -13.658   0.757   0.387  H34   S12  69  
S12  H35   H35   H  0  1  N  N  N   8.362   6.513  -25.416  -12.849   0.120  -1.065  H35   S12  70  
S12  H36   H36   H  0  1  N  N  N  10.017   7.926  -26.515  -12.509  -2.054   0.079  H36   S12  71  
S12  H37   H37   H  0  1  N  N  N  11.298   7.251  -25.452  -13.318  -1.416   1.531  H37   S12  72  
S12  H38   H38   H  0  1  N  N  N  11.021   5.069  -26.503  -15.385  -1.040   0.213  H38   S12  73  
S12  H39   H39   H  0  1  N  N  N   9.741   5.744  -27.567  -14.576  -1.677  -1.238  H39   S12  74  
S12  H40   H40   H  0  1  N  N  N  11.398   7.157  -28.664  -14.236  -3.851  -0.094  H40   S12  75  
S12  H41   H41   H  0  1  N  N  N  12.678   6.482  -27.600  -15.045  -3.213   1.357  H41   S12  76  
S12  H42   H42   H  0  1  N  N  N  12.401   4.300  -28.652  -17.112  -2.837   0.040  H42   S12  77  
S12  H43   H43   H  0  1  N  N  N  11.121   4.975  -29.716  -16.303  -3.474  -1.411  H43   S12  78  
S12  H44   H44   H  0  1  N  N  N  13.210   4.619  -30.940  -17.690  -5.220  -0.326  H44   S12  79  
S12  H45   H45   H  0  1  N  N  N  12.805   6.368  -30.860  -15.963  -5.648  -0.267  H45   S12  80  
S12  H46   H46   H  0  1  N  N  N  14.086   5.693  -29.796  -16.772  -5.011   1.184  H46   S12  81  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
S12  C    CA    SING  N  N   1  
S12  C    O     DOUB  N  N   2  
S12  C    OXT   SING  N  N   3  
S12  N    CA    SING  N  N   4  
S12  N    H     SING  N  N   5  
S12  N    H2    SING  N  N   6  
S12  P    OG    SING  N  N   7  
S12  P    O2    SING  N  N   8  
S12  P    O3    DOUB  N  N   9  
S12  P    O4    SING  N  N  10  
S12  OG   CB    SING  N  N  11  
S12  C2   O2    SING  N  N  12  
S12  C2   C3    SING  N  N  13  
S12  C2   H2B   SING  N  N  14  
S12  C2   H2A   SING  N  N  15  
S12  C3   C4    SING  N  N  16  
S12  C3   O11   SING  N  N  17  
S12  C3   H3    SING  N  N  18  
S12  C4   O52   SING  N  N  19  
S12  C4   H4    SING  N  N  20  
S12  C4   H4A   SING  N  N  21  
S12  C5   C6    SING  N  N  22  
S12  C5   O51   DOUB  N  N  23  
S12  C5   O52   SING  N  N  24  
S12  C6   C7    SING  N  N  25  
S12  C6   H6    SING  N  N  26  
S12  C6   H6A   SING  N  N  27  
S12  C7   C8    SING  N  N  28  
S12  C7   H7    SING  N  N  29  
S12  C8   C9    SING  N  N  30  
S12  C8   H8    SING  N  N  31  
S12  C9   C10   SING  N  N  32  
S12  C9   H9    SING  N  N  33  
S12  C9   H9A   SING  N  N  34  
S12  CA   CB    SING  N  N  35  
S12  CA   HA    SING  N  N  36  
S12  CB   HB2   SING  N  N  37  
S12  CB   HB3   SING  N  N  38  
S12  C10  C11   SING  N  N  39  
S12  C10  H10   SING  N  N  40  
S12  C11  C12   SING  N  N  41  
S12  C11  H11   SING  N  N  42  
S12  O11  HO11  SING  N  N  43  
S12  C12  C13   SING  N  N  44  
S12  C12  H12   SING  N  N  45  
S12  C13  C14   DOUB  N  E  46  
S12  C14  H14   SING  N  N  47  
S12  C14  C15   SING  N  N  48  
S12  C15  C16   SING  N  N  49  
S12  C16  C17   SING  N  N  50  
S12  C17  C18   SING  N  N  51  
S12  C18  C19   SING  N  N  52  
S12  C19  C20   SING  N  N  53  
S12  C20  C21   SING  N  N  54  
S12  C21  C22   SING  N  N  55  
S12  O4   H22   SING  N  N  56  
S12  C7   H23   SING  N  N  57  
S12  C8   H24   SING  N  N  58  
S12  C10  H25   SING  N  N  59  
S12  C11  H26   SING  N  N  60  
S12  C12  H27   SING  N  N  61  
S12  C13  H28   SING  N  N  62  
S12  OXT  HXT   SING  N  N  63  
S12  C15  H30   SING  N  N  64  
S12  C15  H31   SING  N  N  65  
S12  C16  H32   SING  N  N  66  
S12  C16  H33   SING  N  N  67  
S12  C17  H34   SING  N  N  68  
S12  C17  H35   SING  N  N  69  
S12  C18  H36   SING  N  N  70  
S12  C18  H37   SING  N  N  71  
S12  C19  H38   SING  N  N  72  
S12  C19  H39   SING  N  N  73  
S12  C20  H40   SING  N  N  74  
S12  C20  H41   SING  N  N  75  
S12  C21  H42   SING  N  N  76  
S12  C21  H43   SING  N  N  77  
S12  C22  H44   SING  N  N  78  
S12  C22  H45   SING  N  N  79  
S12  C22  H46   SING  N  N  80  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
S12  SMILES            ACDLabs               12.01  "O=C(O)C(N)COP(=O)(OCC(O)COC(=O)CCCCCCC/C=C/CCCCCCCC)O"  
S12  InChI             InChI                 1.03   "InChI=1S/C24H46NO9P/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-23(27)32-18-21(26)19-33-35(30,31)34-20-22(25)24(28)29/h9-10,21-22,26H,2-8,11-20,25H2,1H3,(H,28,29)(H,30,31)/t21-,22-/m0/s1"  
S12  InChIKey          InChI                 1.03   JZWNYZVVZXZRRH-VXKWHMMOSA-N  
S12  SMILES_CANONICAL  CACTVS                3.370  "CCCCCCCC/C=C/CCCCCCCC(=O)OC[C@H](O)CO[P](O)(=O)OC[C@H](N)C(O)=O"  
S12  SMILES            CACTVS                3.370  "CCCCCCCCC=CCCCCCCCC(=O)OC[CH](O)CO[P](O)(=O)OC[CH](N)C(O)=O"  
S12  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "CCCCCCCCC=CCCCCCCCC(=O)OC[C@@H](CO[P@@](=O)(O)OC[C@@H](C(=O)O)N)O"  
S12  SMILES            "OpenEye OEToolkits"  1.7.6  "CCCCCCCCC=CCCCCCCCC(=O)OCC(COP(=O)(O)OCC(C(=O)O)N)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
S12  "SYSTEMATIC NAME"  ACDLabs               12.01  "O-[(S)-hydroxy{[(2S)-2-hydroxy-3-(octadec-9-enoyloxy)propyl]oxy}phosphoryl]-L-serine"  
S12  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "(2S)-2-azanyl-3-[[(2S)-3-octadec-9-enoyloxy-2-oxidanyl-propoxy]-oxidanyl-phosphoryl]oxy-propanoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
S12  "Create component"  2012-03-29  PDBJ  
S12  "Initial release"   2012-09-07  RCSB  
S12  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     S12
_pdbx_chem_comp_synonyms.name        1-oleoyl-2-hydroxy-sn-glycero-3-phospho-L-serine
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
