data_O02
#

_chem_comp.id                                   O02
_chem_comp.name                                 "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-azanyl-2-diazanyl-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]methylphosphonic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C11 H19 N7 O9 P2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-01-13
_chem_comp.pdbx_modified_date                   2020-02-14
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       455.258
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    O02
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6TWA
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
O02  PB      P1   P  0  1  N  N  N  -17.609  19.636  -28.937   6.428   1.248   0.454  PB      O02   1  
O02  O1B     O1   O  0  1  N  N  N  -18.878  20.200  -28.406   7.351  -0.065   0.322  O1B     O02   2  
O02  O2B     O2   O  0  1  N  N  N  -16.353  19.857  -28.066   7.076   2.254   1.531  O2B     O02   3  
O02  O3B     O3   O  0  1  N  N  N  -17.325  20.277  -30.313   6.340   1.922  -0.860  O3B     O02   4  
O02  PA      P2   P  0  1  N  N  N  -19.013  17.491  -30.452   4.025  -0.375  -0.218  PA      O02   5  
O02  O1A     O4   O  0  1  N  N  N  -20.417  18.022  -30.350   4.948  -1.688  -0.350  O1A     O02   6  
O02  O2A     O5   O  0  1  N  N  N  -19.061  15.924  -30.541   3.937   0.299  -1.533  O2A     O02   7  
O02  C3A     C1   C  0  1  N  N  N  -17.802  17.875  -29.177   4.758   0.764   1.002  C3A     O02   8  
O02  "O5'"   O6   O  0  1  N  N  N  -18.274  18.114  -31.699   2.550  -0.803   0.266  "O5'"   O02   9  
O02  "C5'"   C2   C  0  1  N  N  N  -16.920  17.786  -32.099   1.674  -1.607  -0.526  "C5'"   O02  10  
O02  "C4'"   C3   C  0  1  N  N  R  -16.712  18.038  -33.580   0.360  -1.824   0.227  "C4'"   O02  11  
O02  "O4'"   O7   O  0  1  N  N  N  -16.730  19.454  -33.878  -0.343  -0.576   0.352  "O4'"   O02  12  
O02  "C3'"   C4   C  0  1  N  N  S  -15.372  17.550  -34.105  -0.546  -2.786  -0.566  "C3'"   O02  13  
O02  "O3'"   O8   O  0  1  N  N  N  -15.458  16.168  -34.423  -0.836  -3.952   0.208  "O3'"   O02  14  
O02  "C2'"   C5   C  0  1  N  N  R  -15.146  18.434  -35.336  -1.836  -1.968  -0.822  "C2'"   O02  15  
O02  "O2'"   O9   O  0  1  N  N  N  -15.793  17.920  -36.489  -2.999  -2.780  -0.650  "O2'"   O02  16  
O02  "C1'"   C6   C  0  1  N  N  R  -15.833  19.746  -34.942  -1.753  -0.878   0.282  "C1'"   O02  17  
O02  N9      N1   N  0  1  Y  N  N  -14.923  20.825  -34.548  -2.517   0.310  -0.108  N9      O02  18  
O02  C8      C7   C  0  1  Y  N  N  -14.464  21.092  -33.284  -2.022   1.424  -0.720  C8      O02  19  
O02  N7      N2   N  0  1  Y  N  N  -13.686  22.144  -33.207  -2.978   2.283  -0.921  N7      O02  20  
O02  C5      C8   C  0  1  Y  N  N  -13.624  22.604  -34.515  -4.145   1.776  -0.452  C5      O02  21  
O02  C6      C9   C  0  1  Y  N  N  -12.976  23.704  -35.111  -5.471   2.241  -0.398  C6      O02  22  
O02  N6      N3   N  0  1  N  N  N  -12.213  24.575  -34.438  -5.805   3.485  -0.902  N6      O02  23  
O02  N1      N4   N  0  1  Y  N  N  -13.127  23.907  -36.438  -6.396   1.460   0.147  N1      O02  24  
O02  C2      C10  C  0  1  Y  N  N  -13.894  23.053  -37.149  -6.085   0.265   0.633  C2      O02  25  
O02  N3      N5   N  0  1  Y  N  N  -14.555  21.964  -36.680  -4.851  -0.211   0.603  N3      O02  26  
O02  C4      C11  C  0  1  Y  N  N  -14.378  21.800  -35.356  -3.864   0.503   0.070  C4      O02  27  
O02  N4      N6   N  0  1  N  N  N  -14.003  23.368  -38.486  -7.086  -0.509   1.197  N4      O02  28  
O02  N5      N7   N  0  1  N  N  N  -14.724  22.681  -39.491  -8.368  -0.041   1.241  N5      O02  29  
O02  H1      H1   H  0  1  N  N  N  -19.231  20.826  -29.027   7.454  -0.558   1.148  H1      O02  30  
O02  H2      H2   H  0  1  N  N  N  -15.699  20.331  -28.567   7.967   2.553   1.304  H2      O02  31  
O02  H3      H3   H  0  1  N  N  N  -21.032  17.298  -30.361   5.050  -2.181   0.476  H3      O02  32  
O02  H3A2    H4   H  0  0  N  N  N  -18.130  17.422  -28.230   4.823   0.267   1.969  H3A2    O02  33  
O02  H3A1    H5   H  0  0  N  N  N  -16.831  17.449  -29.471   4.133   1.652   1.090  H3A1    O02  34  
O02  "H5'1"  H6   H  0  0  N  N  N  -16.729  16.724  -31.885   1.472  -1.103  -1.471  "H5'1"  O02  35  
O02  "H5'2"  H7   H  0  0  N  N  N  -16.216  18.407  -31.526   2.143  -2.571  -0.722  "H5'2"  O02  36  
O02  "H4'"   H8   H  0  1  N  N  N  -17.513  17.533  -34.139   0.563  -2.236   1.215  "H4'"   O02  37  
O02  "H3'"   H9   H  0  1  N  N  N  -14.585  17.742  -33.360  -0.076  -3.062  -1.509  "H3'"   O02  38  
O02  "HO3'"  H10  H  0  0  N  N  N  -15.598  15.668  -33.628  -1.403  -4.592  -0.243  "HO3'"  O02  39  
O02  "H2'"   H11  H  0  1  N  N  N  -14.071  18.597  -35.501  -1.819  -1.519  -1.815  "H2'"   O02  40  
O02  "HO2'"  H12  H  0  0  N  N  N  -15.379  17.105  -36.748  -3.095  -3.476  -1.316  "HO2'"  O02  41  
O02  "H1'"   H13  H  0  1  N  N  N  -16.414  20.087  -35.812  -2.112  -1.268   1.235  "H1'"   O02  42  
O02  H5      H14  H  0  1  N  N  N  -14.721  20.488  -32.426  -0.988   1.571  -0.997  H5      O02  43  
O02  H61     H15  H  0  1  N  N  N  -11.864  25.269  -35.068  -5.121   4.047  -1.299  H61     O02  44  
O02  H62     H16  H  0  1  N  N  N  -12.760  25.016  -33.726  -6.723   3.796  -0.860  H62     O02  45  
O02  H4      H17  H  0  1  N  N  N  -13.060  23.385  -38.819  -6.876  -1.384   1.561  H4      O02  46  
O02  H12     H18  H  0  1  N  N  N  -14.611  23.153  -40.365  -8.696   0.203   0.319  H12     O02  47  
O02  H11     H19  H  0  1  N  N  N  -14.377  21.746  -39.570  -8.983  -0.711   1.678  H11     O02  48  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
O02  N5     N4      SING  N  N   1  
O02  N4     C2      SING  N  N   2  
O02  C2     N3      DOUB  Y  N   3  
O02  C2     N1      SING  Y  N   4  
O02  N3     C4      SING  Y  N   5  
O02  "O2'"  "C2'"   SING  N  N   6  
O02  N1     C6      DOUB  Y  N   7  
O02  C4     N9      SING  Y  N   8  
O02  C4     C5      DOUB  Y  N   9  
O02  "C2'"  "C1'"   SING  N  N  10  
O02  "C2'"  "C3'"   SING  N  N  11  
O02  C6     C5      SING  Y  N  12  
O02  C6     N6      SING  N  N  13  
O02  "C1'"  N9      SING  N  N  14  
O02  "C1'"  "O4'"   SING  N  N  15  
O02  N9     C8      SING  Y  N  16  
O02  C5     N7      SING  Y  N  17  
O02  "O3'"  "C3'"   SING  N  N  18  
O02  "C3'"  "C4'"   SING  N  N  19  
O02  "O4'"  "C4'"   SING  N  N  20  
O02  "C4'"  "C5'"   SING  N  N  21  
O02  C8     N7      DOUB  Y  N  22  
O02  "C5'"  "O5'"   SING  N  N  23  
O02  "O5'"  PA      SING  N  N  24  
O02  O2A    PA      DOUB  N  N  25  
O02  PA     O1A     SING  N  N  26  
O02  PA     C3A     SING  N  N  27  
O02  O3B    PB      DOUB  N  N  28  
O02  C3A    PB      SING  N  N  29  
O02  PB     O1B     SING  N  N  30  
O02  PB     O2B     SING  N  N  31  
O02  O1B    H1      SING  N  N  32  
O02  O2B    H2      SING  N  N  33  
O02  O1A    H3      SING  N  N  34  
O02  C3A    H3A2    SING  N  N  35  
O02  C3A    H3A1    SING  N  N  36  
O02  "C5'"  "H5'1"  SING  N  N  37  
O02  "C5'"  "H5'2"  SING  N  N  38  
O02  "C4'"  "H4'"   SING  N  N  39  
O02  "C3'"  "H3'"   SING  N  N  40  
O02  "O3'"  "HO3'"  SING  N  N  41  
O02  "C2'"  "H2'"   SING  N  N  42  
O02  "O2'"  "HO2'"  SING  N  N  43  
O02  "C1'"  "H1'"   SING  N  N  44  
O02  C8     H5      SING  N  N  45  
O02  N6     H61     SING  N  N  46  
O02  N6     H62     SING  N  N  47  
O02  N4     H4      SING  N  N  48  
O02  N5     H12     SING  N  N  49  
O02  N5     H11     SING  N  N  50  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
O02  InChI             InChI                 1.03   "InChI=1S/C11H19N7O9P2/c12-8-5-9(16-11(15-8)17-13)18(2-14-5)10-7(20)6(19)4(27-10)1-26-29(24,25)3-28(21,22)23/h2,4,6-7,10,19-20H,1,3,13H2,(H,24,25)(H2,21,22,23)(H3,12,15,16,17)/t4-,6-,7-,10-/m1/s1"  
O02  InChIKey          InChI                 1.03   AJMJEKNHUHCOGZ-KQYNXXCUSA-N  
O02  SMILES_CANONICAL  CACTVS                3.385  "NNc1nc(N)c2ncn([C@@H]3O[C@H](CO[P](O)(=O)C[P](O)(O)=O)[C@@H](O)[C@H]3O)c2n1"  
O02  SMILES            CACTVS                3.385  "NNc1nc(N)c2ncn([CH]3O[CH](CO[P](O)(=O)C[P](O)(O)=O)[CH](O)[CH]3O)c2n1"  
O02  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1nc2c(nc(nc2n1[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(CP(=O)(O)O)O)O)O)NN)N"  
O02  SMILES            "OpenEye OEToolkits"  2.0.7  "c1nc2c(nc(nc2n1C3C(C(C(O3)COP(=O)(CP(=O)(O)O)O)O)O)NN)N"  
#
_pdbx_chem_comp_identifier.comp_id          O02
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-azanyl-2-diazanyl-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]methylphosphonic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
O02  "Create component"  2020-01-13  PDBE  
O02  "Initial release"   2020-02-19  RCSB  
##
