data_ND2
#

_chem_comp.id                                   ND2
_chem_comp.name                                 "4-(1-methylcyclopropyl)oxy-~{N}-[1-(1-methylpiperidin-4-yl)pyrazol-4-yl]-6-(1-methylpyrazol-4-yl)pyrido[3,2-d]pyrimidin-2-amine"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C24 H29 N9 O"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-11-22
_chem_comp.pdbx_modified_date                   2020-10-23
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       459.547
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    ND2
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6TIA
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
ND2  C1   C1   C  0  1  N  N  N  -48.017   -2.917  -59.299  10.047   0.326   0.353  C1   ND2   1  
ND2  C3   C2   C  0  1  N  N  N  -49.178   -4.907  -58.468   7.970   1.350   1.060  C3   ND2   2  
ND2  C7   C3   C  0  1  N  N  N  -48.324   -3.215  -56.894   8.088   0.187  -1.063  C7   ND2   3  
ND2  C9   C4   C  0  1  Y  N  N  -51.152   -6.834  -54.727   3.850  -0.382  -0.135  C9   ND2   4  
ND2  C10  C5   C  0  1  Y  N  N  -52.096   -6.834  -53.746   2.508  -0.180  -0.112  C10  ND2   5  
ND2  C12  C6   C  0  1  Y  N  N  -53.414   -8.192  -52.042   0.182  -0.828   0.002  C12  ND2   6  
ND2  C14  C7   C  0  1  Y  N  N  -54.514   -7.379  -50.105  -2.023  -1.521   0.126  C14  ND2   7  
ND2  C16  C8   C  0  1  N  N  N  -55.429   -6.031  -48.098  -2.444  -3.854   0.206  C16  ND2   8  
ND2  C19  C9   C  0  1  N  N  N  -55.146   -4.634  -47.528  -2.113  -4.460  -1.159  C19  ND2   9  
ND2  C20  C10  C  0  1  Y  N  N  -54.868   -8.735  -49.776  -2.430  -0.165   0.039  C20  ND2  10  
ND2  C22  C11  C  0  1  Y  N  N  -55.888  -10.350  -48.427  -4.081   1.448  -0.027  C22  ND2  11  
ND2  C24  C12  C  0  1  Y  N  N  -54.740  -11.121  -50.392  -1.804   2.178  -0.156  C24  ND2  12  
ND2  N26  N1   N  0  1  Y  N  N  -53.727   -9.448  -51.767  -0.140   0.449  -0.083  N26  ND2  13  
ND2  C27  C13  C  0  1  Y  N  N  -56.647  -10.662  -47.186  -5.524   1.788  -0.004  C27  ND2  14  
ND2  N29  N2   N  0  1  Y  N  N  -57.646  -10.401  -45.244  -7.377   2.973  -0.028  N29  ND2  15  
ND2  C31  C14  C  0  1  N  N  N  -58.301  -12.844  -44.811  -9.059   1.065   0.167  C31  ND2  16  
ND2  C32  C15  C  0  1  Y  N  N  -57.082  -11.901  -46.788  -6.561   0.905   0.096  C32  ND2  17  
ND2  C33  C16  C  0  1  Y  N  N  -52.353   -5.491  -53.425   2.280   1.201  -0.207  C33  ND2  18  
ND2  N2   N3   N  0  1  N  N  N  -48.875   -3.476  -58.243   8.581   0.238   0.320  N2   ND2  19  
ND2  C4   C17  C  0  1  N  N  N  -50.229   -5.400  -57.451   6.455   1.149   1.128  C4   ND2  20  
ND2  C5   C18  C  0  1  N  N  N  -49.783   -5.119  -55.995   5.889   1.086  -0.294  C5   ND2  21  
ND2  C6   C19  C  0  1  N  N  N  -49.322   -3.653  -55.799   6.576  -0.050  -1.058  C6   ND2  22  
ND2  N8   N4   N  0  1  Y  N  N  -50.801   -5.546  -55.005   4.447   0.834  -0.236  N8   ND2  23  
ND2  N11  N5   N  0  1  N  N  N  -52.700   -8.007  -53.230   1.520  -1.178  -0.011  N11  ND2  24  
ND2  N13  N6   N  0  1  Y  N  N  -53.815   -7.190  -51.238  -0.730  -1.792   0.104  N13  ND2  25  
ND2  O15  O1   O  0  1  N  N  N  -54.833   -6.241  -49.399  -2.937  -2.513   0.231  O15  ND2  26  
ND2  C17  C20  C  0  1  N  N  N  -56.882   -6.479  -47.898  -1.561  -4.255   1.390  C17  ND2  27  
ND2  C18  C21  C  0  1  N  N  N  -54.532   -5.859  -46.866  -3.352  -4.930  -0.394  C18  ND2  28  
ND2  N21  N7   N  0  1  Y  N  N  -55.566   -9.088  -48.689  -3.715   0.182   0.055  N21  ND2  29  
ND2  C23  C22  C  0  1  Y  N  N  -55.465  -11.405  -49.268  -3.134   2.478  -0.133  C23  ND2  30  
ND2  C25  C23  C  0  1  Y  N  N  -54.429   -9.768  -50.669  -1.425   0.826  -0.069  C25  ND2  31  
ND2  C28  C24  C  0  1  Y  N  N  -57.022   -9.740  -46.184  -6.076   3.083  -0.077  C28  ND2  32  
ND2  N30  N8   N  0  1  Y  N  N  -57.689  -11.762  -45.594  -7.705   1.616   0.081  N30  ND2  33  
ND2  N34  N9   N  0  1  Y  N  N  -51.580   -4.730  -54.164   3.438   1.805  -0.285  N34  ND2  34  
ND2  H1   H1   H  0  1  N  N  N  -47.820   -1.855  -59.089  10.389   0.287   1.387  H1   ND2  35  
ND2  H2   H2   H  0  1  N  N  N  -47.065   -3.468  -59.328  10.473  -0.510  -0.203  H2   ND2  36  
ND2  H3   H3   H  0  1  N  N  N  -48.524   -3.010  -60.271  10.365   1.264  -0.101  H3   ND2  37  
ND2  H4   H4   H  0  1  N  N  N  -49.570   -5.039  -59.487   8.378   1.381   2.070  H4   ND2  38  
ND2  H5   H5   H  0  1  N  N  N  -48.256   -5.496  -58.351   8.189   2.289   0.551  H5   ND2  39  
ND2  H6   H6   H  0  1  N  N  N  -47.386   -3.777  -56.773   8.306   1.131  -1.562  H6   ND2  40  
ND2  H7   H7   H  0  1  N  N  N  -48.123   -2.139  -56.789   8.581  -0.627  -1.594  H7   ND2  41  
ND2  H8   H8   H  0  1  N  N  N  -50.747   -7.712  -55.207   4.352  -1.337  -0.079  H8   ND2  42  
ND2  H9   H9   H  0  1  N  N  N  -54.508   -3.932  -48.085  -2.272  -3.836  -2.039  H9   ND2  43  
ND2  H10  H10  H  0  1  N  N  N  -55.945   -4.076  -47.018  -1.266  -5.144  -1.214  H10  ND2  44  
ND2  H11  H11  H  0  1  N  N  N  -54.412  -11.910  -51.053  -1.061   2.958  -0.239  H11  ND2  45  
ND2  H12  H12  H  0  1  N  N  N  -58.733  -12.430  -43.888  -9.361   1.005   1.212  H12  ND2  46  
ND2  H13  H13  H  0  1  N  N  N  -59.094  -13.322  -45.404  -9.750   1.712  -0.374  H13  ND2  47  
ND2  H14  H14  H  0  1  N  N  N  -57.534  -13.590  -44.555  -9.075   0.068  -0.274  H14  ND2  48  
ND2  H15  H15  H  0  1  N  N  N  -56.959  -12.824  -47.335  -6.478  -0.169   0.173  H15  ND2  49  
ND2  H16  H16  H  0  1  N  N  N  -53.067   -5.143  -52.693   1.314   1.683  -0.216  H16  ND2  50  
ND2  H18  H18  H  0  1  N  N  N  -51.180   -4.881  -57.640   6.235   0.217   1.649  H18  ND2  51  
ND2  H19  H19  H  0  1  N  N  N  -50.370   -6.483  -57.579   6.000   1.982   1.663  H19  ND2  52  
ND2  H20  H20  H  0  1  N  N  N  -48.893   -5.743  -55.824   6.075   2.032  -0.802  H20  ND2  53  
ND2  H21  H21  H  0  1  N  N  N  -48.836   -3.561  -54.817   6.208  -0.072  -2.084  H21  ND2  54  
ND2  H22  H22  H  0  1  N  N  N  -50.203   -2.995  -55.836   6.358  -1.000  -0.572  H22  ND2  55  
ND2  H23  H23  H  0  1  N  N  N  -52.601   -8.823  -53.799   1.778  -2.111   0.051  H23  ND2  56  
ND2  H24  H24  H  0  1  N  N  N  -57.196   -6.257  -46.867  -0.548  -3.888   1.227  H24  ND2  57  
ND2  H25  H25  H  0  1  N  N  N  -57.532   -5.941  -48.603  -1.962  -3.821   2.306  H25  ND2  58  
ND2  H26  H26  H  0  1  N  N  N  -56.960   -7.561  -48.080  -1.544  -5.341   1.479  H26  ND2  59  
ND2  H27  H27  H  0  1  N  N  N  -54.888   -6.185  -45.878  -3.320  -5.923   0.054  H27  ND2  60  
ND2  H28  H28  H  0  1  N  N  N  -53.450   -6.041  -46.945  -4.325  -4.614  -0.770  H28  ND2  61  
ND2  H29  H29  H  0  1  N  N  N  -55.713  -12.428  -49.024  -3.458   3.507  -0.199  H29  ND2  62  
ND2  H30  H30  H  0  1  N  N  N  -56.828   -8.678  -46.193  -5.520   4.006  -0.158  H30  ND2  63  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ND2  C1   N2   SING  N  N   1  
ND2  C3   N2   SING  N  N   2  
ND2  C3   C4   SING  N  N   3  
ND2  N2   C7   SING  N  N   4  
ND2  C4   C5   SING  N  N   5  
ND2  C7   C6   SING  N  N   6  
ND2  C5   C6   SING  N  N   7  
ND2  C5   N8   SING  N  N   8  
ND2  N8   C9   SING  Y  N   9  
ND2  N8   N34  SING  Y  N  10  
ND2  C9   C10  DOUB  Y  N  11  
ND2  N34  C33  DOUB  Y  N  12  
ND2  C10  C33  SING  Y  N  13  
ND2  C10  N11  SING  N  N  14  
ND2  N11  C12  SING  N  N  15  
ND2  C12  N26  DOUB  Y  N  16  
ND2  C12  N13  SING  Y  N  17  
ND2  N26  C25  SING  Y  N  18  
ND2  N13  C14  DOUB  Y  N  19  
ND2  C25  C24  DOUB  Y  N  20  
ND2  C25  C20  SING  Y  N  21  
ND2  C24  C23  SING  Y  N  22  
ND2  C14  C20  SING  Y  N  23  
ND2  C14  O15  SING  N  N  24  
ND2  C20  N21  DOUB  Y  N  25  
ND2  O15  C16  SING  N  N  26  
ND2  C23  C22  DOUB  Y  N  27  
ND2  N21  C22  SING  Y  N  28  
ND2  C22  C27  SING  N  N  29  
ND2  C16  C17  SING  N  N  30  
ND2  C16  C19  SING  N  N  31  
ND2  C16  C18  SING  N  N  32  
ND2  C19  C18  SING  N  N  33  
ND2  C27  C32  DOUB  Y  N  34  
ND2  C27  C28  SING  Y  N  35  
ND2  C32  N30  SING  Y  N  36  
ND2  C28  N29  DOUB  Y  N  37  
ND2  N30  N29  SING  Y  N  38  
ND2  N30  C31  SING  N  N  39  
ND2  C1   H1   SING  N  N  40  
ND2  C1   H2   SING  N  N  41  
ND2  C1   H3   SING  N  N  42  
ND2  C3   H4   SING  N  N  43  
ND2  C3   H5   SING  N  N  44  
ND2  C7   H6   SING  N  N  45  
ND2  C7   H7   SING  N  N  46  
ND2  C9   H8   SING  N  N  47  
ND2  C19  H9   SING  N  N  48  
ND2  C19  H10  SING  N  N  49  
ND2  C24  H11  SING  N  N  50  
ND2  C31  H12  SING  N  N  51  
ND2  C31  H13  SING  N  N  52  
ND2  C31  H14  SING  N  N  53  
ND2  C32  H15  SING  N  N  54  
ND2  C33  H16  SING  N  N  55  
ND2  C4   H18  SING  N  N  56  
ND2  C4   H19  SING  N  N  57  
ND2  C5   H20  SING  N  N  58  
ND2  C6   H21  SING  N  N  59  
ND2  C6   H22  SING  N  N  60  
ND2  N11  H23  SING  N  N  61  
ND2  C17  H24  SING  N  N  62  
ND2  C17  H25  SING  N  N  63  
ND2  C17  H26  SING  N  N  64  
ND2  C18  H27  SING  N  N  65  
ND2  C18  H28  SING  N  N  66  
ND2  C23  H29  SING  N  N  67  
ND2  C28  H30  SING  N  N  68  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
ND2  InChI             InChI                 1.03   "InChI=1S/C24H29N9O/c1-24(8-9-24)34-22-21-20(5-4-19(28-21)16-12-25-32(3)14-16)29-23(30-22)27-17-13-26-33(15-17)18-6-10-31(2)11-7-18/h4-5,12-15,18H,6-11H2,1-3H3,(H,27,29,30)"  
ND2  InChIKey          InChI                 1.03   WGMWEVJCHUDPID-UHFFFAOYSA-N  
ND2  SMILES_CANONICAL  CACTVS                3.385  "CN1CCC(CC1)n2cc(Nc3nc(OC4(C)CC4)c5nc(ccc5n3)c6cnn(C)c6)cn2"  
ND2  SMILES            CACTVS                3.385  "CN1CCC(CC1)n2cc(Nc3nc(OC4(C)CC4)c5nc(ccc5n3)c6cnn(C)c6)cn2"  
ND2  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC1(CC1)Oc2c3c(ccc(n3)c4cnn(c4)C)nc(n2)Nc5cnn(c5)C6CCN(CC6)C"  
ND2  SMILES            "OpenEye OEToolkits"  2.0.7  "CC1(CC1)Oc2c3c(ccc(n3)c4cnn(c4)C)nc(n2)Nc5cnn(c5)C6CCN(CC6)C"  
#
_pdbx_chem_comp_identifier.comp_id          ND2
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "4-(1-methylcyclopropyl)oxy-~{N}-[1-(1-methylpiperidin-4-yl)pyrazol-4-yl]-6-(1-methylpyrazol-4-yl)pyrido[3,2-d]pyrimidin-2-amine"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
ND2  "Create component"  2019-11-22  PDBE  
ND2  "Initial release"   2020-10-28  RCSB  
##
