data_L82
# 
_chem_comp.id                                    L82 
_chem_comp.name                                  "(2~{S})-2-[bis(pyridin-2-ylmethyl)amino]-5-(3-phenyl-5-sulfanylidene-1~{H}-1,2,4-triazol-4-yl)pentanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H26 N6 O2 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-06-20 
_chem_comp.pdbx_modified_date                    2022-12-09 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        474.578 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     L82 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8A76 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
L82 C4  C1  C 0 1 N N N -28.975 -34.240 12.975 -1.169 -0.051 -0.103 C4  L82 1  
L82 C14 C2  C 0 1 N N N -33.134 -35.712 10.943 2.040  0.101  -0.892 C14 L82 2  
L82 C5  C3  C 0 1 N N N -27.471 -34.527 13.024 -2.289 -0.196 -1.136 C5  L82 3  
L82 C6  C4  C 0 1 N N N -26.156 -33.308 14.813 -4.426 0.840  -0.251 C6  L82 4  
L82 C11 C5  C 0 1 Y N N -27.660 -35.713 17.266 -6.773 -1.651 1.298  C11 L82 5  
L82 C7  C6  C 0 1 Y N N -26.350 -34.242 15.988 -4.933 -0.342 0.482  C7  L82 6  
L82 C8  C7  C 0 1 Y N N -25.266 -34.439 16.854 -4.040 -1.253 1.045  C8  L82 7  
L82 C9  C8  C 0 1 Y N N -25.386 -35.293 17.966 -4.519 -2.349 1.732  C9  L82 8  
L82 C10 C9  C 0 1 Y N N -26.589 -35.923 18.158 -5.883 -2.551 1.854  C10 L82 9  
L82 C12 C10 C 0 1 Y N N -27.568 -34.872 16.161 -6.307 -0.548 0.613  C12 L82 10 
L82 C13 C11 C 0 1 N N N -26.192 -32.381 12.855 -3.136 2.134  -1.497 C13 L82 11 
L82 N1  N1  N 0 1 N N N -26.671 -33.422 13.564 -3.249 0.898  -0.972 N1  L82 12 
L82 N2  N2  N 0 1 N N N -25.426 -32.210 14.905 -5.018 1.998  -0.330 N2  L82 13 
L82 C3  C12 C 0 1 N N N -29.589 -35.186 11.934 -0.240 -1.264 -0.184 C3  L82 14 
L82 N3  N3  N 0 1 N N N -25.459 -31.651 13.665 -4.217 2.842  -1.112 N3  L82 15 
L82 C1  C13 C 0 1 N N N -31.334 -33.512 11.676 1.756  -2.344 0.815  C1  L82 16 
L82 C15 C14 C 0 1 Y N N -34.037 -34.807 10.114 3.018  -1.006 -1.192 C15 L82 17 
L82 C16 C15 C 0 1 Y N N -33.782 -34.608 8.750  2.557  -2.205 -1.703 C16 L82 18 
L82 C17 C16 C 0 1 Y N N -34.637 -33.810 8.002  3.466  -3.215 -1.980 C17 L82 19 
L82 C18 C17 C 0 1 Y N N -35.709 -33.220 8.668  4.810  -2.980 -1.732 C18 L82 20 
L82 C19 C18 C 0 1 Y N N -35.911 -33.449 10.034 5.196  -1.756 -1.220 C19 L82 21 
L82 C2  C19 C 0 1 N N S -31.104 -34.995 11.853 0.880  -1.118 0.849  C2  L82 22 
L82 C20 C20 C 0 1 N N N -31.076 -36.678 10.039 2.888  0.129  1.376  C20 L82 23 
L82 C21 C21 C 0 1 Y N N -31.941 -37.374 8.974  3.386  1.549  1.440  C21 L82 24 
L82 C22 C22 C 0 1 Y N N -32.289 -36.673 7.824  3.013  2.356  2.498  C22 L82 25 
L82 C23 C23 C 0 1 Y N N -33.075 -37.321 6.865  3.481  3.661  2.551  C23 L82 26 
L82 C24 C24 C 0 1 Y N N -33.469 -38.640 7.097  4.311  4.105  1.533  C24 L82 27 
L82 C25 C25 C 0 1 Y N N -33.067 -39.281 8.262  4.641  3.240  0.507  C25 L82 28 
L82 N4  N4  N 0 1 N N N -31.717 -35.492 10.617 1.686  0.069  0.533  N4  L82 29 
L82 N5  N5  N 0 1 Y N N -35.081 -34.229 10.714 4.304  -0.818 -0.968 N5  L82 30 
L82 N6  N6  N 0 1 Y N N -32.325 -38.640 9.153  4.177  2.006  0.489  N6  L82 31 
L82 O1  O1  O 0 1 N N N -32.222 -32.945 12.379 1.202  -3.566 0.839  O1  L82 32 
L82 O2  O2  O 0 1 N N N -30.673 -32.893 10.791 2.958  -2.226 0.767  O2  L82 33 
L82 S1  S1  S 0 1 N N N -26.549 -32.093 11.119 -1.849 2.703  -2.473 S1  L82 34 
L82 H1  H1  H 0 1 N N N -29.149 -33.194 12.682 -0.601 0.857  -0.309 H1  L82 35 
L82 H2  H2  H 0 1 N N N -29.425 -34.424 13.962 -1.601 0.010  0.896  H2  L82 36 
L82 H3  H3  H 0 1 N N N -33.294 -35.498 12.010 2.495  1.062  -1.132 H3  L82 37 
L82 H4  H4  H 0 1 N N N -33.391 -36.761 10.737 1.141  -0.036 -1.493 H4  L82 38 
L82 H5  H5  H 0 1 N N N -27.308 -35.413 13.655 -1.864 -0.160 -2.139 H5  L82 39 
L82 H6  H6  H 0 1 N N N -27.125 -34.737 12.001 -2.796 -1.150 -0.990 H6  L82 40 
L82 H7  H7  H 0 1 N N N -28.592 -36.227 17.448 -7.837 -1.814 1.397  H7  L82 41 
L82 H8  H8  H 0 1 N N N -24.331 -33.931 16.667 -2.976 -1.099 0.947  H8  L82 42 
L82 H9  H9  H 0 1 N N N -24.560 -35.447 18.644 -3.829 -3.056 2.169  H9  L82 43 
L82 H10 H10 H 0 1 N N N -26.717 -36.586 19.001 -6.253 -3.415 2.386  H10 L82 44 
L82 H11 H11 H 0 1 N N N -28.395 -34.721 15.483 -7.003 0.154  0.179  H11 L82 45 
L82 H12 H12 H 0 1 N N N -29.371 -36.226 12.219 -0.808 -2.171 0.022  H12 L82 46 
L82 H13 H13 H 0 1 N N N -29.146 -34.975 10.950 0.193  -1.324 -1.183 H13 L82 47 
L82 H14 H14 H 0 1 N N N -24.992 -30.805 13.407 -4.408 3.766  -1.339 H14 L82 48 
L82 H15 H15 H 0 1 N N N -32.926 -35.073 8.284  1.503  -2.353 -1.884 H15 L82 49 
L82 H16 H16 H 0 1 N N N -34.477 -33.653 6.945  3.135  -4.162 -2.380 H16 L82 50 
L82 H17 H17 H 0 1 N N N -36.390 -32.581 8.126  5.545  -3.744 -1.936 H17 L82 51 
L82 H18 H18 H 0 1 N N N -36.748 -32.988 10.537 6.241  -1.565 -1.023 H18 L82 52 
L82 H19 H19 H 0 1 N N N -31.606 -35.379 12.753 0.446  -1.009 1.842  H19 L82 53 
L82 H20 H20 H 0 1 N N N -30.873 -37.395 10.848 3.662  -0.509 0.950  H20 L82 54 
L82 H21 H21 H 0 1 N N N -30.128 -36.371 9.574  2.644  -0.217 2.380  H21 L82 55 
L82 H22 H22 H 0 1 N N N -31.961 -35.655 7.675  2.364  1.977  3.274  H22 L82 56 
L82 H23 H23 H 0 1 N N N -33.372 -36.810 5.961  3.206  4.314  3.365  H23 L82 57 
L82 H24 H24 H 0 1 N N N -34.082 -39.159 6.375  4.694  5.115  1.542  H24 L82 58 
L82 H25 H25 H 0 1 N N N -33.360 -40.305 8.442  5.287  3.579  -0.290 H25 L82 59 
L82 H27 H27 H 0 1 N N N -32.289 -32.031 12.129 1.805  -4.322 0.816  H27 L82 60 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
L82 C23 C24 DOUB Y N 1  
L82 C23 C22 SING Y N 2  
L82 C24 C25 SING Y N 3  
L82 C22 C21 DOUB Y N 4  
L82 C17 C18 DOUB Y N 5  
L82 C17 C16 SING Y N 6  
L82 C25 N6  DOUB Y N 7  
L82 C18 C19 SING Y N 8  
L82 C16 C15 DOUB Y N 9  
L82 C21 N6  SING Y N 10 
L82 C21 C20 SING N N 11 
L82 C19 N5  DOUB Y N 12 
L82 C20 N4  SING N N 13 
L82 C15 N5  SING Y N 14 
L82 C15 C14 SING N N 15 
L82 N4  C14 SING N N 16 
L82 N4  C2  SING N N 17 
L82 O2  C1  DOUB N N 18 
L82 S1  C13 DOUB N N 19 
L82 C1  C2  SING N N 20 
L82 C1  O1  SING N N 21 
L82 C2  C3  SING N N 22 
L82 C3  C4  SING N N 23 
L82 C13 N1  SING N N 24 
L82 C13 N3  SING N N 25 
L82 C4  C5  SING N N 26 
L82 C5  N1  SING N N 27 
L82 N1  C6  SING N N 28 
L82 N3  N2  SING N N 29 
L82 C6  N2  DOUB N N 30 
L82 C6  C7  SING N N 31 
L82 C7  C12 DOUB Y N 32 
L82 C7  C8  SING Y N 33 
L82 C12 C11 SING Y N 34 
L82 C8  C9  DOUB Y N 35 
L82 C11 C10 DOUB Y N 36 
L82 C9  C10 SING Y N 37 
L82 C4  H1  SING N N 38 
L82 C4  H2  SING N N 39 
L82 C14 H3  SING N N 40 
L82 C14 H4  SING N N 41 
L82 C5  H5  SING N N 42 
L82 C5  H6  SING N N 43 
L82 C11 H7  SING N N 44 
L82 C8  H8  SING N N 45 
L82 C9  H9  SING N N 46 
L82 C10 H10 SING N N 47 
L82 C12 H11 SING N N 48 
L82 C3  H12 SING N N 49 
L82 C3  H13 SING N N 50 
L82 N3  H14 SING N N 51 
L82 C16 H15 SING N N 52 
L82 C17 H16 SING N N 53 
L82 C18 H17 SING N N 54 
L82 C19 H18 SING N N 55 
L82 C2  H19 SING N N 56 
L82 C20 H20 SING N N 57 
L82 C20 H21 SING N N 58 
L82 C22 H22 SING N N 59 
L82 C23 H23 SING N N 60 
L82 C24 H24 SING N N 61 
L82 C25 H25 SING N N 62 
L82 O1  H27 SING N N 63 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
L82 InChI            InChI                1.06  "InChI=1S/C25H26N6O2S/c32-24(33)22(13-8-16-31-23(28-29-25(31)34)19-9-2-1-3-10-19)30(17-20-11-4-6-14-26-20)18-21-12-5-7-15-27-21/h1-7,9-12,14-15,22H,8,13,16-18H2,(H,29,34)(H,32,33)/t22-/m0/s1" 
L82 InChIKey         InChI                1.06  DXFIRCHAKLZTEP-QFIPXVFZSA-N                                                                                                                                                                     
L82 SMILES_CANONICAL CACTVS               3.385 "OC(=O)[C@H](CCCN1C(=S)NN=C1c2ccccc2)N(Cc3ccccn3)Cc4ccccn4"                                                                                                                                     
L82 SMILES           CACTVS               3.385 "OC(=O)[CH](CCCN1C(=S)NN=C1c2ccccc2)N(Cc3ccccn3)Cc4ccccn4"                                                                                                                                      
L82 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)C2=NNC(=S)N2CCC[C@@H](C(=O)O)N(Cc3ccccn3)Cc4ccccn4"                                                                                                                                  
L82 SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)C2=NNC(=S)N2CCCC(C(=O)O)N(Cc3ccccn3)Cc4ccccn4"                                                                                                                                       
# 
_pdbx_chem_comp_identifier.comp_id           L82 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S})-2-[bis(pyridin-2-ylmethyl)amino]-5-(3-phenyl-5-sulfanylidene-1~{H}-1,2,4-triazol-4-yl)pentanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
L82 "Create component"  2022-06-20 PDBE 
L82 "Modify descriptor" 2022-08-22 RCSB 
L82 "Initial release"   2022-12-14 RCSB 
# 
