data_KU2
#

_chem_comp.id                                   KU2
_chem_comp.name                                 
;2-[(2S)-1-{[(2-chlorophenyl)sulfanyl]acetyl}pyrrolidin-2-yl]-5-hydroxy-6-oxo-N-(2-phenoxyethyl)-1,6-dihydropyrimidine-4
-carboxamide
;

_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C25 H25 Cl N4 O5 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        SRI-30023
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-06-27
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       529.008
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    KU2
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5WF3
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
KU2  C10  C1   C   0  1  N  N  N  128.662  193.089  282.344    2.688   1.522   0.097  C10  KU2   1  
KU2  C13  C2   C   0  1  N  N  N  133.855  195.273  280.628   -4.462  -2.216   0.681  C13  KU2   2  
KU2  C14  C3   C   0  1  Y  N  N  130.361  198.328  282.004    6.994  -3.355  -1.574  C14  KU2   3  
KU2  C17  C4   C   0  1  Y  N  N  128.442  196.377  281.495    5.137  -1.807  -0.226  C17  KU2   4  
KU2  C18  C5   C   0  1  Y  N  N  129.680  196.324  280.885    5.624  -1.394  -1.460  C18  KU2   5  
KU2  C19  C6   C   0  1  Y  N  N  130.634  197.294  281.139    6.555  -2.166  -2.128  C19  KU2   6  
KU2  C20  C7   C   0  1  Y  N  N  130.589  194.113  276.951   -9.100  -2.628  -0.972  C20  KU2   7  
KU2  C21  C8   C   0  1  Y  N  N  130.688  193.026  277.788   -8.400  -2.037  -2.008  C21  KU2   8  
KU2  C22  C9   C   0  1  Y  N  N  131.415  193.111  278.964   -7.057  -1.750  -1.861  C22  KU2   9  
KU2  C24  C10  C   0  1  Y  N  N  131.942  195.389  278.461   -7.114  -2.647   0.366  C24  KU2  10  
KU2  C25  C11  C   0  1  Y  N  N  131.213  195.291  277.287   -8.457  -2.933   0.213  C25  KU2  11  
KU2  C1   C12  C   0  1  N  N  N  129.804  194.728  285.050    0.181   3.273   0.316  C1   KU2  12  
KU2  C11  C13  C   0  1  N  N  N  127.391  193.908  282.482    3.608   0.515  -0.544  C11  KU2  13  
KU2  C12  C14  C   0  1  N  N  N  134.346  195.132  282.045   -2.962  -1.921   0.614  C12  KU2  14  
KU2  C15  C15  C   0  1  Y  N  N  129.134  198.405  282.624    6.505  -3.775  -0.351  C15  KU2  15  
KU2  C16  C16  C   0  1  Y  N  N  128.177  197.440  282.371    5.578  -3.005   0.325  C16  KU2  16  
KU2  C2   C17  C   0  1  N  N  N  131.710  196.014  284.604   -1.276   1.484   0.527  C2   KU2  17  
KU2  C23  C18  C   0  1  Y  N  N  132.041  194.295  279.295   -6.410  -2.054  -0.672  C23  KU2  18  
KU2  C3   C19  C   0  1  N  N  N  131.302  196.992  285.462   -2.302   2.331   0.913  C3   KU2  19  
KU2  C4   C20  C   0  1  N  N  N  130.060  196.820  286.159   -2.011   3.768   0.986  C4   KU2  20  
KU2  C5   C21  C   0  1  N  N  N  132.982  196.109  283.835   -1.507   0.025   0.433  C5   KU2  21  
KU2  C6   C22  C   0  1  N  N  N  130.797  191.888  285.068    2.731   4.546  -1.987  C6   KU2  22  
KU2  C7   C23  C   0  1  N  N  N  129.457  192.277  285.679    1.493   4.853  -1.104  C7   KU2  23  
KU2  C8   C24  C   0  1  N  N  S  129.042  193.449  284.779    1.567   3.763  -0.014  C8   KU2  24  
KU2  C9   C25  C   0  1  N  N  N  130.496  191.905  283.578    2.777   2.999  -1.932  C9   KU2  25  
KU2  N1   N1   N   0  1  N  N  N  130.966  194.916  284.411   -0.065   1.998   0.242  N1   KU2  26  
KU2  N2   N2   N   0  1  N  N  N  129.336  195.666  285.925   -0.759   4.177   0.684  N2   KU2  27  
KU2  N3   N3   N   0  1  N  N  N  133.231  195.117  282.980   -2.750  -0.472   0.593  N3   KU2  28  
KU2  N4   N4   N   0  1  N  N  N  129.364  192.851  283.469    2.372   2.658  -0.556  N4   KU2  29  
KU2  O1   O1   O   0  1  N  N  N  132.048  198.092  285.646   -3.534   1.849   1.212  O1   KU2  30  
KU2  O2   O2   O   0  1  N  N  N  129.645  197.671  286.955   -2.869   4.567   1.319  O2   KU2  31  
KU2  O3   O3   O   0  1  N  N  N  133.768  197.049  283.953   -0.576  -0.725   0.213  O3   KU2  32  
KU2  O4   O4   O   0  1  N  N  N  129.015  192.610  281.259    2.229   1.309   1.199  O4   KU2  33  
KU2  O5   O5   O   0  1  N  N  N  132.756  194.373  280.463   -5.089  -1.773  -0.524  O5   KU2  34  
KU2  S1   S1   S   0  1  N  N  N  127.216  195.157  281.171    3.955  -0.821   0.632  S1   KU2  35  
KU2  CL1  CL1  CL  0  0  N  N  N  126.642  197.562  283.166    4.973  -3.526   1.867  CL1  KU2  36  
KU2  H1   H1   H   0  1  N  N  N  134.660  195.016  279.924   -4.616  -3.289   0.798  H1   KU2  37  
KU2  H2   H2   H   0  1  N  N  N  133.525  196.306  280.446   -4.898  -1.691   1.531  H2   KU2  38  
KU2  H3   H3   H   0  1  N  N  N  131.111  199.081  282.197    7.719  -3.959  -2.101  H3   KU2  39  
KU2  H4   H4   H   0  1  N  N  N  129.906  195.518  280.203    5.281  -0.466  -1.894  H4   KU2  40  
KU2  H5   H5   H   0  1  N  N  N  131.598  197.239  280.655    6.940  -1.841  -3.083  H5   KU2  41  
KU2  H6   H6   H   0  1  N  N  N  130.023  194.041  276.034  -10.151  -2.847  -1.088  H6   KU2  42  
KU2  H7   H7   H   0  1  N  N  N  130.196  192.101  277.527   -8.904  -1.800  -2.934  H7   KU2  43  
KU2  H8   H8   H   0  1  N  N  N  131.491  192.255  279.618   -6.511  -1.289  -2.670  H8   KU2  44  
KU2  H9   H9   H   0  1  N  N  N  132.430  196.317  278.722   -6.613  -2.886   1.293  H9   KU2  45  
KU2  H10  H10  H   0  1  N  N  N  131.134  196.146  276.631   -9.006  -3.394   1.021  H10  KU2  46  
KU2  H11  H11  H   0  1  N  N  N  127.406  194.419  283.456    3.131   0.102  -1.433  H11  KU2  47  
KU2  H12  H12  H   0  1  N  N  N  126.527  193.228  282.438    4.541   1.003  -0.826  H12  KU2  48  
KU2  H13  H13  H   0  1  N  N  N  134.909  194.191  282.140   -2.468  -2.348   1.487  H13  KU2  49  
KU2  H14  H14  H   0  1  N  N  N  135.005  195.979  282.284   -2.545  -2.363  -0.291  H14  KU2  50  
KU2  H15  H15  H   0  1  N  N  N  128.920  199.216  283.305    6.847  -4.706   0.076  H15  KU2  51  
KU2  H16  H16  H   0  1  N  N  N  131.109  190.887  285.399    2.579   4.897  -3.008  H16  KU2  52  
KU2  H17  H17  H   0  1  N  N  N  131.578  192.619  285.324    3.634   4.980  -1.559  H17  KU2  53  
KU2  H18  H18  H   0  1  N  N  N  129.569  192.594  286.726    1.571   5.846  -0.661  H18  KU2  54  
KU2  H19  H19  H   0  1  N  N  N  128.734  191.450  285.622    0.574   4.761  -1.683  H19  KU2  55  
KU2  H20  H20  H   0  1  N  N  N  127.960  193.626  284.870    2.041   4.165   0.881  H20  KU2  56  
KU2  H21  H21  H   0  1  N  N  N  130.209  190.904  283.223    2.076   2.573  -2.650  H21  KU2  57  
KU2  H22  H22  H   0  1  N  N  N  131.364  192.262  283.005    3.787   2.642  -2.132  H22  KU2  58  
KU2  H23  H23  H   0  1  N  N  N  128.467  195.518  286.398   -0.532   5.119   0.731  H23  KU2  59  
KU2  H24  H24  H   0  1  N  N  N  132.622  194.324  282.981   -3.503   0.130   0.693  H24  KU2  60  
KU2  H25  H25  H   0  1  N  N  N  132.836  198.033  285.118   -4.171   2.529   1.469  H25  KU2  61  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
KU2  C20  C25  DOUB  Y  N   1  
KU2  C20  C21  SING  Y  N   2  
KU2  C25  C24  SING  Y  N   3  
KU2  C21  C22  DOUB  Y  N   4  
KU2  C24  C23  DOUB  Y  N   5  
KU2  C22  C23  SING  Y  N   6  
KU2  C23  O5   SING  N  N   7  
KU2  O5   C13  SING  N  N   8  
KU2  C13  C12  SING  N  N   9  
KU2  C18  C19  DOUB  Y  N  10  
KU2  C18  C17  SING  Y  N  11  
KU2  C19  C14  SING  Y  N  12  
KU2  S1   C17  SING  N  N  13  
KU2  S1   C11  SING  N  N  14  
KU2  O4   C10  DOUB  N  N  15  
KU2  C17  C16  DOUB  Y  N  16  
KU2  C14  C15  DOUB  Y  N  17  
KU2  C12  N3   SING  N  N  18  
KU2  C10  C11  SING  N  N  19  
KU2  C10  N4   SING  N  N  20  
KU2  C16  C15  SING  Y  N  21  
KU2  C16  CL1  SING  N  N  22  
KU2  N3   C5   SING  N  N  23  
KU2  N4   C9   SING  N  N  24  
KU2  N4   C8   SING  N  N  25  
KU2  C9   C6   SING  N  N  26  
KU2  C5   O3   DOUB  N  N  27  
KU2  C5   C2   SING  N  N  28  
KU2  N1   C2   SING  N  N  29  
KU2  N1   C1   DOUB  N  N  30  
KU2  C2   C3   DOUB  N  N  31  
KU2  C8   C1   SING  N  N  32  
KU2  C8   C7   SING  N  N  33  
KU2  C1   N2   SING  N  N  34  
KU2  C6   C7   SING  N  N  35  
KU2  C3   O1   SING  N  N  36  
KU2  C3   C4   SING  N  N  37  
KU2  N2   C4   SING  N  N  38  
KU2  C4   O2   DOUB  N  N  39  
KU2  C13  H1   SING  N  N  40  
KU2  C13  H2   SING  N  N  41  
KU2  C14  H3   SING  N  N  42  
KU2  C18  H4   SING  N  N  43  
KU2  C19  H5   SING  N  N  44  
KU2  C20  H6   SING  N  N  45  
KU2  C21  H7   SING  N  N  46  
KU2  C22  H8   SING  N  N  47  
KU2  C24  H9   SING  N  N  48  
KU2  C25  H10  SING  N  N  49  
KU2  C11  H11  SING  N  N  50  
KU2  C11  H12  SING  N  N  51  
KU2  C12  H13  SING  N  N  52  
KU2  C12  H14  SING  N  N  53  
KU2  C15  H15  SING  N  N  54  
KU2  C6   H16  SING  N  N  55  
KU2  C6   H17  SING  N  N  56  
KU2  C7   H18  SING  N  N  57  
KU2  C7   H19  SING  N  N  58  
KU2  C8   H20  SING  N  N  59  
KU2  C9   H21  SING  N  N  60  
KU2  C9   H22  SING  N  N  61  
KU2  N2   H23  SING  N  N  62  
KU2  N3   H24  SING  N  N  63  
KU2  O1   H25  SING  N  N  64  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
KU2  SMILES            ACDLabs               12.01  "C(CSc1c(cccc1)Cl)(N4C(C=3NC(C(=C(C(=O)NCCOc2ccccc2)N=3)O)=O)CCC4)=O"  
KU2  InChI             InChI                 1.03   "InChI=1S/C25H25ClN4O5S/c26-17-9-4-5-11-19(17)36-15-20(31)30-13-6-10-18(30)23-28-21(22(32)25(34)29-23)24(33)27-12-14-35-16-7-2-1-3-8-16/h1-5,7-9,11,18,32H,6,10,12-15H2,(H,27,33)(H,28,29,34)/t18-/m0/s1"  
KU2  InChIKey          InChI                 1.03   SAJTUABEFGSMCM-SFHVURJKSA-N  
KU2  SMILES_CANONICAL  CACTVS                3.385  "OC1=C(N=C(NC1=O)[C@@H]2CCCN2C(=O)CSc3ccccc3Cl)C(=O)NCCOc4ccccc4"  
KU2  SMILES            CACTVS                3.385  "OC1=C(N=C(NC1=O)[CH]2CCCN2C(=O)CSc3ccccc3Cl)C(=O)NCCOc4ccccc4"  
KU2  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "c1ccc(cc1)OCCNC(=O)C2=C(C(=O)NC(=N2)[C@@H]3CCCN3C(=O)CSc4ccccc4Cl)O"  
KU2  SMILES            "OpenEye OEToolkits"  2.0.6  "c1ccc(cc1)OCCNC(=O)C2=C(C(=O)NC(=N2)C3CCCN3C(=O)CSc4ccccc4Cl)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
KU2  "SYSTEMATIC NAME"  ACDLabs               12.01  "2-[(2S)-1-{[(2-chlorophenyl)sulfanyl]acetyl}pyrrolidin-2-yl]-5-hydroxy-6-oxo-N-(2-phenoxyethyl)-1,6-dihydropyrimidine-4-carboxamide"  
KU2  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "2-[(2~{S})-1-[2-(2-chlorophenyl)sulfanylethanoyl]pyrrolidin-2-yl]-5-oxidanyl-6-oxidanylidene-~{N}-(2-phenoxyethyl)-1~{H}-pyrimidine-4-carboxamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
KU2  "Create component"  2017-06-27  RCSB  
KU2  "Modify synonyms"   2017-07-12  RCSB  
KU2  "Initial release"   2017-12-27  RCSB  
KU2  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     KU2
_pdbx_chem_comp_synonyms.name        SRI-30023
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
