data_JV2
#

_chem_comp.id                                   JV2
_chem_comp.name                                 "1-(((2R,3S,6R)-3-hydroxy-2,3,4,6-tetrahydro-1H-2,6-methanobenzo[c][1,5]oxazocin-8-yl)methyl)-3-(2-((R)-2-(2-(methylthio)phenyl)pyrrolidin-1-yl)-2-oxoethyl)urea"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C26 H32 N4 O4 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-04-02
_chem_comp.pdbx_modified_date                   2019-11-22
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       496.622
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    JV2
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6R8O
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
JV2  C1   C1   C  0  1  N  N  N    0.673  -2.663  -27.727   7.431   3.978  -0.566  C1   JV2   1  
JV2  C3   C2   C  0  1  Y  N  N    1.787  -3.627  -25.571   6.228   1.654   0.426  C3   JV2   2  
JV2  C4   C3   C  0  1  Y  N  N    3.127  -3.414  -25.199   6.381   2.348   1.620  C4   JV2   3  
JV2  C5   C4   C  0  1  Y  N  N    3.452  -3.014  -23.906   5.951   1.784   2.805  C5   JV2   4  
JV2  C6   C5   C  0  1  Y  N  N    2.430  -2.857  -22.967   5.370   0.529   2.805  C6   JV2   5  
JV2  C7   C6   C  0  1  Y  N  N    1.109  -3.073  -23.336   5.217  -0.165   1.618  C7   JV2   6  
JV2  C8   C7   C  0  1  Y  N  N    0.741  -3.426  -24.625   5.644   0.393   0.430  C8   JV2   7  
JV2  C11  C8   C  0  1  N  N  N   -1.414  -5.491  -23.592   6.191  -2.499  -1.753  C11  JV2   8  
JV2  C12  C9   C  0  1  N  N  N   -2.269  -4.259  -23.221   4.896  -2.685  -0.925  C12  JV2   9  
JV2  N13  N1   N  0  1  N  N  N   -1.698  -3.164  -24.003   4.367  -1.322  -0.740  N13  JV2  10  
JV2  C16  C10  C  0  1  N  N  N   -1.374  -0.830  -24.704   2.041  -2.093  -0.401  C16  JV2  11  
JV2  C18  C11  C  0  1  N  N  N   -3.220   0.606  -25.213  -0.356  -2.282  -0.009  C18  JV2  12  
JV2  C21  C12  C  0  1  N  N  N   -5.129   2.107  -25.556  -2.744  -2.587   0.373  C21  JV2  13  
JV2  C23  C13  C  0  1  Y  N  N   -6.992   3.584  -24.694  -4.709  -1.258  -0.421  C23  JV2  14  
JV2  C24  C14  C  0  1  Y  N  N   -8.037   3.864  -23.812  -5.823  -0.472  -0.184  C24  JV2  15  
JV2  C27  C15  C  0  1  N  N  R  -10.120   4.534  -21.929  -8.016   1.281   0.284  C27  JV2  16  
JV2  C30  C16  C  0  1  Y  N  N   -7.518   1.855  -22.585  -5.424  -0.641   2.180  C30  JV2  17  
JV2  C31  C17  C  0  1  Y  N  N   -6.493   1.585  -23.481  -4.312  -1.421   1.937  C31  JV2  18  
JV2  C32  C18  C  0  1  N  N  S   -9.401   5.632  -21.133  -7.277   2.559  -0.107  C32  JV2  19  
JV2  C35  C19  C  0  1  N  N  N   -8.085   6.032  -21.801  -5.895   2.218  -0.667  C35  JV2  20  
JV2  S2   S1   S  0  1  N  N  N    1.400  -4.154  -27.208   6.768   2.373  -1.089  S2   JV2  21  
JV2  C9   C20  C  0  1  N  N  R   -0.737  -3.690  -24.973   5.476  -0.365  -0.862  C9   JV2  22  
JV2  C10  C21  C  0  1  N  N  N   -1.007  -5.200  -25.034   6.753  -1.179  -1.162  C10  JV2  23  
JV2  C14  C22  C  0  1  N  N  N   -2.053  -1.883  -23.827   3.079  -1.005  -0.501  C14  JV2  24  
JV2  O15  O1   O  0  1  N  N  N   -2.880  -1.623  -22.958   2.755   0.156  -0.366  O15  JV2  25  
JV2  N17  N2   N  0  1  N  N  N   -2.104   0.391  -24.502   0.730  -1.494  -0.138  N17  JV2  26  
JV2  O19  O2   O  0  1  N  N  N   -3.574  -0.170  -26.117  -0.248  -3.488  -0.111  O19  JV2  27  
JV2  N20  N3   N  0  1  N  N  N   -3.912   1.711  -24.890  -1.563  -1.731   0.233  N20  JV2  28  
JV2  C22  C23  C  0  1  Y  N  N   -6.218   2.445  -24.540  -3.956  -1.731   0.637  C22  JV2  29  
JV2  C25  C24  C  0  1  N  N  R   -8.836   5.148  -23.982  -6.616   0.051  -1.357  C25  JV2  30  
JV2  C26  C25  C  0  1  N  N  N  -10.243   4.946  -23.402  -8.059   0.325  -0.916  C26  JV2  31  
JV2  N28  N4   N  0  1  N  N  N   -9.355   3.273  -21.856  -7.323   0.605   1.385  N28  JV2  32  
JV2  C29  C26  C  0  1  Y  N  N   -8.293   3.013  -22.748  -6.187  -0.166   1.118  C29  JV2  33  
JV2  O34  O3   O  0  1  N  N  N  -10.267   6.778  -21.042  -8.031   3.257  -1.100  O34  JV2  34  
JV2  O36  O4   O  0  1  N  N  N   -8.258   6.240  -23.212  -6.031   1.301  -1.757  O36  JV2  35  
JV2  H1   H1   H  0  1  N  N  N    0.339  -2.761  -28.771   8.248   3.822   0.139  H1   JV2  36  
JV2  H2   H2   H  0  1  N  N  N   -0.191  -2.434  -27.086   7.800   4.520  -1.436  H2   JV2  37  
JV2  H3   H3   H  0  1  N  N  N    1.410  -1.850  -27.653   6.643   4.557  -0.085  H3   JV2  38  
JV2  H4   H4   H  0  1  N  N  N    3.913  -3.563  -25.925   6.835   3.328   1.621  H4   JV2  39  
JV2  H5   H5   H  0  1  N  N  N    4.480  -2.828  -23.633   6.070   2.323   3.733  H5   JV2  40  
JV2  H6   H6   H  0  1  N  N  N    2.667  -2.568  -21.954   5.036   0.090   3.733  H6   JV2  41  
JV2  H7   H7   H  0  1  N  N  N    0.337  -2.962  -22.589   4.762  -1.145   1.622  H7   JV2  42  
JV2  H8   H8   H  0  1  N  N  N   -2.004  -6.417  -23.526   6.883  -3.326  -1.589  H8   JV2  43  
JV2  H9   H9   H  0  1  N  N  N   -0.532  -5.572  -22.940   5.964  -2.388  -2.814  H9   JV2  44  
JV2  H10  H10  H  0  1  N  N  N   -2.196  -4.046  -22.144   4.180  -3.299  -1.472  H10  JV2  45  
JV2  H11  H11  H  0  1  N  N  N   -3.323  -4.422  -23.492   5.124  -3.139   0.040  H11  JV2  46  
JV2  H12  H12  H  0  1  N  N  N   -1.417  -1.129  -25.762   2.006  -2.648  -1.338  H12  JV2  47  
JV2  H13  H13  H  0  1  N  N  N   -0.324  -0.701  -24.402   2.301  -2.769   0.413  H13  JV2  48  
JV2  H14  H14  H  0  1  N  N  N   -4.928   2.992  -26.178  -2.892  -3.154  -0.546  H14  JV2  49  
JV2  H15  H15  H  0  1  N  N  N   -5.476   1.281  -26.195  -2.597  -3.275   1.205  H15  JV2  50  
JV2  H16  H16  H  0  1  N  N  N   -6.784   4.264  -25.507  -4.431  -1.506  -1.434  H16  JV2  51  
JV2  H17  H17  H  0  1  N  N  N  -11.127   4.386  -21.511  -9.033   1.528   0.591  H17  JV2  52  
JV2  H18  H18  H  0  1  N  N  N   -7.718   1.178  -21.768  -5.702  -0.398   3.195  H18  JV2  53  
JV2  H19  H19  H  0  1  N  N  N   -5.899   0.692  -23.354  -3.720  -1.789   2.761  H19  JV2  54  
JV2  H20  H20  H  0  1  N  N  N   -9.182   5.248  -20.126  -7.162   3.193   0.772  H20  JV2  55  
JV2  H21  H21  H  0  1  N  N  N   -7.346   5.232  -21.645  -5.411   3.130  -1.018  H21  JV2  56  
JV2  H22  H22  H  0  1  N  N  N   -7.720   6.963  -21.344  -5.288   1.764   0.116  H22  JV2  57  
JV2  H23  H23  H  0  1  N  N  N   -0.943  -3.258  -25.964   5.278   0.331  -1.677  H23  JV2  58  
JV2  H24  H24  H  0  1  N  N  N   -1.820  -5.435  -25.737   7.311  -1.373  -0.246  H24  JV2  59  
JV2  H25  H25  H  0  1  N  N  N   -0.103  -5.759  -25.318   7.376  -0.664  -1.893  H25  JV2  60  
JV2  H26  H26  H  0  1  N  N  N   -1.784   1.070  -23.841   0.644  -0.532  -0.057  H26  JV2  61  
JV2  H27  H27  H  0  1  N  N  N   -3.566   2.288  -24.150  -1.649  -0.768   0.314  H27  JV2  62  
JV2  H28  H28  H  0  1  N  N  N   -8.905   5.411  -25.048  -6.602  -0.670  -2.175  H28  JV2  63  
JV2  H29  H29  H  0  1  N  N  N  -10.811   5.885  -23.476  -8.539  -0.610  -0.625  H29  JV2  64  
JV2  H30  H30  H  0  1  N  N  N  -10.764   4.157  -23.964  -8.613   0.785  -1.734  H30  JV2  65  
JV2  H31  H31  H  0  1  N  N  N  -10.016   2.532  -21.978  -7.650   0.693   2.294  H31  JV2  66  
JV2  H32  H32  H  0  1  N  N  N   -9.833   7.465  -20.551  -7.622   4.081  -1.397  H32  JV2  67  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
JV2  C1   S2   SING  N  N   1  
JV2  S2   C3   SING  N  N   2  
JV2  O19  C18  DOUB  N  N   3  
JV2  C3   C4   DOUB  Y  N   4  
JV2  C3   C8   SING  Y  N   5  
JV2  C21  N20  SING  N  N   6  
JV2  C21  C22  SING  N  N   7  
JV2  C18  N20  SING  N  N   8  
JV2  C18  N17  SING  N  N   9  
JV2  C4   C5   SING  Y  N  10  
JV2  C10  C9   SING  N  N  11  
JV2  C10  C11  SING  N  N  12  
JV2  C9   C8   SING  N  N  13  
JV2  C9   N13  SING  N  N  14  
JV2  C16  N17  SING  N  N  15  
JV2  C16  C14  SING  N  N  16  
JV2  C23  C22  DOUB  Y  N  17  
JV2  C23  C24  SING  Y  N  18  
JV2  C8   C7   DOUB  Y  N  19  
JV2  C22  C31  SING  Y  N  20  
JV2  N13  C14  SING  N  N  21  
JV2  N13  C12  SING  N  N  22  
JV2  C25  C24  SING  N  N  23  
JV2  C25  C26  SING  N  N  24  
JV2  C25  O36  SING  N  N  25  
JV2  C5   C6   DOUB  Y  N  26  
JV2  C14  O15  DOUB  N  N  27  
JV2  C24  C29  DOUB  Y  N  28  
JV2  C11  C12  SING  N  N  29  
JV2  C31  C30  DOUB  Y  N  30  
JV2  C26  C27  SING  N  N  31  
JV2  C7   C6   SING  Y  N  32  
JV2  O36  C35  SING  N  N  33  
JV2  C29  C30  SING  Y  N  34  
JV2  C29  N28  SING  N  N  35  
JV2  C27  N28  SING  N  N  36  
JV2  C27  C32  SING  N  N  37  
JV2  C35  C32  SING  N  N  38  
JV2  C32  O34  SING  N  N  39  
JV2  C1   H1   SING  N  N  40  
JV2  C1   H2   SING  N  N  41  
JV2  C1   H3   SING  N  N  42  
JV2  C4   H4   SING  N  N  43  
JV2  C5   H5   SING  N  N  44  
JV2  C6   H6   SING  N  N  45  
JV2  C7   H7   SING  N  N  46  
JV2  C11  H8   SING  N  N  47  
JV2  C11  H9   SING  N  N  48  
JV2  C12  H10  SING  N  N  49  
JV2  C12  H11  SING  N  N  50  
JV2  C16  H12  SING  N  N  51  
JV2  C16  H13  SING  N  N  52  
JV2  C21  H14  SING  N  N  53  
JV2  C21  H15  SING  N  N  54  
JV2  C23  H16  SING  N  N  55  
JV2  C27  H17  SING  N  N  56  
JV2  C30  H18  SING  N  N  57  
JV2  C31  H19  SING  N  N  58  
JV2  C32  H20  SING  N  N  59  
JV2  C35  H21  SING  N  N  60  
JV2  C35  H22  SING  N  N  61  
JV2  C9   H23  SING  N  N  62  
JV2  C10  H24  SING  N  N  63  
JV2  C10  H25  SING  N  N  64  
JV2  N17  H26  SING  N  N  65  
JV2  N20  H27  SING  N  N  66  
JV2  C25  H28  SING  N  N  67  
JV2  C26  H29  SING  N  N  68  
JV2  C26  H30  SING  N  N  69  
JV2  N28  H31  SING  N  N  70  
JV2  O34  H32  SING  N  N  71  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
JV2  InChI             InChI                 1.03   "InChI=1S/C26H32N4O4S/c1-35-24-7-3-2-5-17(24)21-6-4-10-30(21)25(32)14-28-26(33)27-13-16-8-9-19-18(11-16)23-12-20(29-19)22(31)15-34-23/h2-3,5,7-9,11,20-23,29,31H,4,6,10,12-15H2,1H3,(H2,27,28,33)/t20-,21-,22-,23-/m1/s1"  
JV2  InChIKey          InChI                 1.03   BICVGZIZTMOLHN-SSGKUCQKSA-N  
JV2  SMILES_CANONICAL  CACTVS                3.385  "CSc1ccccc1[C@H]2CCCN2C(=O)CNC(=O)NCc3ccc4N[C@@H]5C[C@@H](OC[C@H]5O)c4c3"  
JV2  SMILES            CACTVS                3.385  "CSc1ccccc1[CH]2CCCN2C(=O)CNC(=O)NCc3ccc4N[CH]5C[CH](OC[CH]5O)c4c3"  
JV2  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CSc1ccccc1[C@H]2CCCN2C(=O)CNC(=O)NCc3ccc4c(c3)[C@H]5C[C@@H](N4)[C@@H](CO5)O"  
JV2  SMILES            "OpenEye OEToolkits"  2.0.7  "CSc1ccccc1C2CCCN2C(=O)CNC(=O)NCc3ccc4c(c3)C5CC(N4)C(CO5)O"  
#
_pdbx_chem_comp_identifier.comp_id          JV2
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "1-[2-[(2~{R})-2-(2-methylsulfanylphenyl)pyrrolidin-1-yl]-2-oxidanylidene-ethyl]-3-[[(1~{R},9~{R},10~{S})-10-oxidanyl-12-oxa-8-azatricyclo[7.3.1.0^{2,7}]trideca-2(7),3,5-trien-4-yl]methyl]urea"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
JV2  "Create component"  2019-04-02  PDBE  
JV2  "Initial release"   2019-11-27  RCSB  
##
