data_JA2
# 
_chem_comp.id                                    JA2 
_chem_comp.name                                  "5-(1H-benzimidazol-2-yl)pentan-1-amine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H17 N3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-04-02 
_chem_comp.pdbx_modified_date                    2014-10-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        203.283 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     JA2 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4CWA 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
JA2 N1   N1   N 0 1 Y N N 15.361 -21.594 5.735  -1.545 -1.422 -0.147 N1   JA2 1  
JA2 C2   C2   C 0 1 Y N N 16.586 -21.228 6.171  -2.695 -0.663 -0.233 C2   JA2 2  
JA2 C3   C3   C 0 1 Y N N 17.531 -21.640 5.171  -2.375 0.589  0.318  C3   JA2 3  
JA2 C4   C4   C 0 1 Y N N 18.915 -21.359 5.350  -3.353 1.586  0.372  C4   JA2 4  
JA2 C5   C5   C 0 1 Y N N 19.326 -20.699 6.521  -4.606 1.337  -0.110 C5   JA2 5  
JA2 C6   C6   C 0 1 Y N N 18.387 -20.339 7.519  -4.923 0.101  -0.654 C6   JA2 6  
JA2 C7   C7   C 0 1 Y N N 17.006 -20.586 7.343  -3.975 -0.899 -0.717 C7   JA2 7  
JA2 C8   C8   C 0 1 Y N N 15.499 -22.242 4.533  -0.590 -0.645 0.431  C8   JA2 8  
JA2 N9   N9   N 0 1 Y N N 16.820 -22.253 4.159  -1.074 0.531  0.703  N9   JA2 9  
JA2 C10  C10  C 0 1 N N N 14.337 -22.745 3.713  0.824  -1.083 0.715  C10  JA2 10 
JA2 C11  C11  C 0 1 N N N 14.019 -21.512 2.832  1.802  -0.103 0.064  C11  JA2 11 
JA2 C12  C12  C 0 1 N N N 12.966 -21.686 1.733  3.237  -0.548 0.352  C12  JA2 12 
JA2 C13  C13  C 0 1 N N N 12.584 -20.350 1.040  4.216  0.432  -0.298 C13  JA2 13 
JA2 C14  C14  C 0 1 N N N 11.583 -20.601 -0.094 5.651  -0.013 -0.010 C14  JA2 14 
JA2 N15  N15  N 0 1 N N N 11.393 -19.374 -0.795 6.590  0.928  -0.635 N15  JA2 15 
JA2 HN1  HN1  H 0 1 N N N 14.498 -21.422 6.209  -1.439 -2.341 -0.441 HN1  JA2 16 
JA2 H4   H4   H 0 1 N N N 19.636 -21.648 4.600  -3.117 2.552  0.794  H4   JA2 17 
JA2 H5   H5   H 0 1 N N N 20.371 -20.463 6.662  -5.359 2.111  -0.066 H5   JA2 18 
JA2 H6   H6   H 0 1 N N N 18.731 -19.869 8.428  -5.919 -0.081 -1.030 H6   JA2 19 
JA2 H7   H7   H 0 1 N N N 16.291 -20.286 8.095  -4.227 -1.859 -1.141 H7   JA2 20 
JA2 H10  H10  H 0 1 N N N 14.624 -23.612 3.100  0.989  -1.100 1.792  H10  JA2 21 
JA2 H10A H10A H 0 0 N N N 13.482 -23.013 4.351  0.984  -2.081 0.307  H10A JA2 22 
JA2 H11  H11  H 0 1 N N N 13.670 -20.710 3.499  1.637  -0.086 -1.013 H11  JA2 23 
JA2 H11A H11A H 0 0 N N N 14.956 -21.203 2.346  1.642  0.895  0.472  H11A JA2 24 
JA2 H12  H12  H 0 1 N N N 13.364 -22.374 0.972  3.403  -0.565 1.430  H12  JA2 25 
JA2 H12A H12A H 0 0 N N N 12.060 -22.120 2.181  3.397  -1.546 -0.056 H12A JA2 26 
JA2 H13  H13  H 0 1 N N N 12.130 -19.675 1.780  4.050  0.449  -1.376 H13  JA2 27 
JA2 H13A H13A H 0 0 N N N 13.491 -19.885 0.626  4.056  1.430  0.110  H13A JA2 28 
JA2 H14  H14  H 0 1 N N N 11.979 -21.365 -0.779 5.816  -0.030 1.067  H14  JA2 29 
JA2 H14A H14A H 0 0 N N N 10.625 -20.945 0.323  5.811  -1.011 -0.418 H14A JA2 30 
JA2 HN15 HN15 H 0 0 N N N 10.742 -19.513 -1.541 7.545  0.656  -0.459 HN15 JA2 31 
JA2 HN1A HN1A H 0 0 N N N 11.036 -18.683 -0.166 6.414  1.011  -1.625 HN1A JA2 32 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
JA2 N1  C2   SING Y N 1  
JA2 N1  C8   SING Y N 2  
JA2 C2  C3   DOUB Y N 3  
JA2 C2  C7   SING Y N 4  
JA2 C3  C4   SING Y N 5  
JA2 C3  N9   SING Y N 6  
JA2 C4  C5   DOUB Y N 7  
JA2 C5  C6   SING Y N 8  
JA2 C6  C7   DOUB Y N 9  
JA2 C8  N9   DOUB Y N 10 
JA2 C8  C10  SING N N 11 
JA2 C10 C11  SING N N 12 
JA2 C11 C12  SING N N 13 
JA2 C12 C13  SING N N 14 
JA2 C13 C14  SING N N 15 
JA2 C14 N15  SING N N 16 
JA2 N1  HN1  SING N N 17 
JA2 C4  H4   SING N N 18 
JA2 C5  H5   SING N N 19 
JA2 C6  H6   SING N N 20 
JA2 C7  H7   SING N N 21 
JA2 C10 H10  SING N N 22 
JA2 C10 H10A SING N N 23 
JA2 C11 H11  SING N N 24 
JA2 C11 H11A SING N N 25 
JA2 C12 H12  SING N N 26 
JA2 C12 H12A SING N N 27 
JA2 C13 H13  SING N N 28 
JA2 C13 H13A SING N N 29 
JA2 C14 H14  SING N N 30 
JA2 C14 H14A SING N N 31 
JA2 N15 HN15 SING N N 32 
JA2 N15 HN1A SING N N 33 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
JA2 SMILES           ACDLabs              12.01 n2c1ccccc1nc2CCCCCN                                                                               
JA2 InChI            InChI                1.03  "InChI=1S/C12H17N3/c13-9-5-1-2-8-12-14-10-6-3-4-7-11(10)15-12/h3-4,6-7H,1-2,5,8-9,13H2,(H,14,15)" 
JA2 InChIKey         InChI                1.03  XTJRXHPNZGDOGE-UHFFFAOYSA-N                                                                       
JA2 SMILES_CANONICAL CACTVS               3.385 "NCCCCCc1[nH]c2ccccc2n1"                                                                          
JA2 SMILES           CACTVS               3.385 "NCCCCCc1[nH]c2ccccc2n1"                                                                          
JA2 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1ccc2c(c1)[nH]c(n2)CCCCCN"                                                                      
JA2 SMILES           "OpenEye OEToolkits" 1.7.6 "c1ccc2c(c1)[nH]c(n2)CCCCCN"                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
JA2 "SYSTEMATIC NAME" ACDLabs              12.01 "5-(1H-benzimidazol-2-yl)pentan-1-amine" 
JA2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "5-(1H-benzimidazol-2-yl)pentan-1-amine" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
JA2 "Create component" 2014-04-02 EBI  
JA2 "Initial release"  2014-10-08 RCSB 
# 
