data_9X2
# 
_chem_comp.id                                    9X2 
_chem_comp.name                                  "~{N}-(2,3-dihydro-1~{H}-inden-2-yl)-3-[[4-[[[(2~{S})-pyrrolidin-2-yl]carbonylamino]methyl]piperidin-1-yl]carbonylamino]pyrazine-2-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H33 N7 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-11-22 
_chem_comp.pdbx_modified_date                    2022-08-22 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        491.585 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     9X2 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7QB7 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
9X2 N1  N1  N 0 1 N N N 41.715 4.763  132.229 -1.301  -1.271 1.062  N1  9X2 1  
9X2 N3  N2  N 0 1 Y N N 44.033 8.321  136.398 3.957   -3.289 -0.814 N3  9X2 2  
9X2 C4  C1  C 0 1 N N N 40.662 4.376  131.284 -0.983  0.162  1.005  C4  9X2 3  
9X2 C5  C2  C 0 1 N N N 42.893 3.887  132.229 -2.663  -1.677 1.436  C5  9X2 4  
9X2 C6  C3  C 0 1 N N N 42.483 2.429  132.366 -3.660  -0.957 0.523  C6  9X2 5  
9X2 C7  C4  C 0 1 N N N 41.478 5.681  133.190 -0.364  -2.195 0.772  C7  9X2 6  
9X2 C8  C5  C 0 1 Y N N 42.660 6.958  134.984 1.775   -2.759 -0.075 C8  9X2 7  
9X2 C10 C6  C 0 1 Y N N 42.894 8.651  137.029 3.606   -4.558 -0.862 C10 9X2 8  
9X2 C13 C7  C 0 1 N N N 47.634 7.135  134.675 5.129   0.825  -0.555 C13 9X2 9  
9X2 C15 C8  C 0 1 Y N N 48.716 9.217  134.282 6.727   2.213  0.636  C15 9X2 10 
9X2 C17 C9  C 0 1 N N N 48.730 7.344  135.736 6.381   1.085  -1.420 C17 9X2 11 
9X2 C20 C10 C 0 1 Y N N 49.592 11.405 134.758 8.321   3.949  1.077  C20 9X2 12 
9X2 C21 C11 C 0 1 Y N N 49.015 10.512 133.871 7.306   3.117  1.510  C21 9X2 13 
9X2 C22 C12 C 0 1 N N S 44.327 0.651  127.609 -8.226  1.424  0.199  C22 9X2 14 
9X2 C24 C13 C 0 1 N N N 45.898 1.764  126.115 -10.290 0.303  -0.494 C24 9X2 15 
9X2 N   N3  N 0 1 N N N 42.661 1.617  129.108 -5.778  1.077  0.256  N   9X2 16 
9X2 C   C14 C 0 1 N N N 43.898 1.722  128.614 -6.842  1.626  -0.362 C   9X2 17 
9X2 O   O1  O 0 1 N N N 44.665 2.638  128.914 -6.686  2.283  -1.369 O   9X2 18 
9X2 C1  C15 C 0 1 N N N 42.059 2.670  129.921 -4.432  1.274  -0.290 C1  9X2 19 
9X2 C11 C16 C 0 1 Y N N 41.664 8.141  136.652 2.320   -4.944 -0.511 C11 9X2 20 
9X2 C12 C17 C 0 1 N N N 45.184 7.065  134.665 3.465   -0.946 -0.375 C12 9X2 21 
9X2 C14 C18 C 0 1 N N N 48.017 8.105  133.541 5.618   1.207  0.858  C14 9X2 22 
9X2 C16 C19 C 0 1 Y N N 49.033 8.806  135.569 7.166   2.143  -0.673 C16 9X2 23 
9X2 C18 C20 C 0 1 Y N N 49.598 9.713  136.471 8.182   2.978  -1.105 C18 9X2 24 
9X2 C19 C21 C 0 1 Y N N 49.873 11.013 136.065 8.760   3.879  -0.231 C19 9X2 25 
9X2 C2  C22 C 0 1 N N N 41.492 2.172  131.242 -3.413  0.552  0.594  C2  9X2 26 
9X2 C23 C23 C 0 1 N N N 45.832 0.771  127.301 -8.790  0.055  -0.237 C23 9X2 27 
9X2 C25 C24 C 0 1 N N N 44.432 1.969  125.698 -10.507 1.803  -0.189 C25 9X2 28 
9X2 C3  C25 C 0 1 N N N 40.226 2.947  131.544 -2.002  0.858  0.098  C3  9X2 29 
9X2 C9  C26 C 0 1 Y N N 43.910 7.472  135.367 3.076   -2.370 -0.429 C9  9X2 30 
9X2 N2  N4  N 0 1 N N N 42.567 6.074  133.914 0.848   -1.808 0.328  N2  9X2 31 
9X2 N4  N5  N 0 1 Y N N 41.527 7.276  135.637 1.436   -4.042 -0.127 N4  9X2 32 
9X2 N5  N6  N 0 1 N N N 46.323 7.444  135.253 4.743   -0.587 -0.610 N5  9X2 33 
9X2 N6  N7  N 0 1 N N N 43.669 0.853  126.309 -9.168  2.420  -0.374 N6  9X2 34 
9X2 O1  O2  O 0 1 N N N 40.358 6.137  133.349 -0.612  -3.377 0.912  O1  9X2 35 
9X2 O2  O3  O 0 1 N N N 45.164 6.403  133.631 2.633   -0.097 -0.118 O2  9X2 36 
9X2 H1  H1  H 0 1 N N N 41.047 4.457  130.257 -1.034  0.589  2.007  H1  9X2 37 
9X2 H2  H2  H 0 1 N N N 39.799 5.047  131.406 0.020   0.298  0.599  H2  9X2 38 
9X2 H3  H3  H 0 1 N N N 43.441 4.020  131.285 -2.769  -2.755 1.314  H3  9X2 39 
9X2 H4  H4  H 0 1 N N N 43.544 4.159  133.073 -2.854  -1.404 2.473  H4  9X2 40 
9X2 H5  H5  H 0 1 N N N 42.008 2.254  133.343 -3.527  -1.300 -0.503 H5  9X2 41 
9X2 H6  H6  H 0 1 N N N 43.360 1.773  132.262 -4.677  -1.175 0.851  H6  9X2 42 
9X2 H7  H7  H 0 1 N N N 42.940 9.339  137.860 4.324   -5.303 -1.174 H7  9X2 43 
9X2 H8  H8  H 0 1 N N N 47.665 6.099  134.306 4.303   1.464  -0.869 H8  9X2 44 
9X2 H9  H9  H 0 1 N N N 48.358 7.124  136.747 6.971   0.174  -1.515 H9  9X2 45 
9X2 H10 H10 H 0 1 N N N 49.614 6.724  135.528 6.091   1.452  -2.405 H10 9X2 46 
9X2 H11 H11 H 0 1 N N N 49.825 12.409 134.435 8.771   4.653  1.761  H11 9X2 47 
9X2 H12 H12 H 0 1 N N N 48.797 10.821 132.859 6.964   3.172  2.533  H12 9X2 48 
9X2 H13 H13 H 0 1 N N N 44.106 -0.350 128.008 -8.209  1.499  1.287  H13 9X2 49 
9X2 H14 H14 H 0 1 N N N 46.482 1.339  125.285 -10.537 0.087  -1.533 H14 9X2 50 
9X2 H15 H15 H 0 1 N N N 46.349 2.716  126.431 -10.895 -0.312 0.173  H15 9X2 51 
9X2 H16 H16 H 0 1 N N N 42.131 0.791  128.915 -5.902  0.552  1.062  H16 9X2 52 
9X2 H17 H17 H 0 1 N N N 42.829 3.426  130.136 -4.388  0.869  -1.301 H17 9X2 53 
9X2 H18 H18 H 0 1 N N N 41.243 3.131  129.344 -4.202  2.339  -0.314 H18 9X2 54 
9X2 H19 H19 H 0 1 N N N 40.783 8.451  137.195 2.041   -5.986 -0.553 H19 9X2 55 
9X2 H20 H20 H 0 1 N N N 47.124 8.477  133.018 4.807   1.658  1.429  H20 9X2 56 
9X2 H21 H21 H 0 1 N N N 48.692 7.624  132.818 6.002   0.328  1.375  H21 9X2 57 
9X2 H22 H22 H 0 1 N N N 49.820 9.404  137.482 8.526   2.924  -2.127 H22 9X2 58 
9X2 H23 H23 H 0 1 N N N 50.304 11.718 136.761 9.553   4.529  -0.571 H23 9X2 59 
9X2 H24 H24 H 0 1 N N N 41.270 1.097  131.175 -3.518  0.894  1.623  H24 9X2 60 
9X2 H25 H25 H 0 1 N N N 46.251 -0.205 127.016 -8.300  -0.282 -1.151 H25 9X2 61 
9X2 H26 H26 H 0 1 N N N 46.378 1.165  128.171 -8.658  -0.679 0.557  H26 9X2 62 
9X2 H27 H27 H 0 1 N N N 44.061 2.935  126.072 -11.224 2.234  -0.889 H27 9X2 63 
9X2 H28 H28 H 0 1 N N N 44.339 1.940  124.602 -10.849 1.938  0.837  H28 9X2 64 
9X2 H29 H29 H 0 1 N N N 39.406 2.651  130.873 -1.836  1.935  0.123  H29 9X2 65 
9X2 H30 H30 H 0 1 N N N 39.912 2.809  132.589 -1.888  0.496  -0.924 H30 9X2 66 
9X2 H31 H31 H 0 1 N N N 43.433 5.662  133.631 1.073   -0.865 0.289  H31 9X2 67 
9X2 H32 H32 H 0 1 N N N 46.279 7.953  136.112 5.407   -1.264 -0.814 H32 9X2 68 
9X2 H33 H33 H 0 1 N N N 42.708 1.102  126.431 -8.974  2.578  -1.351 H33 9X2 69 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
9X2 C25 C24 SING N N 1  
9X2 C25 N6  SING N N 2  
9X2 C24 C23 SING N N 3  
9X2 N6  C22 SING N N 4  
9X2 C23 C22 SING N N 5  
9X2 C22 C   SING N N 6  
9X2 C   O   DOUB N N 7  
9X2 C   N   SING N N 8  
9X2 N   C1  SING N N 9  
9X2 C1  C2  SING N N 10 
9X2 C2  C3  SING N N 11 
9X2 C2  C6  SING N N 12 
9X2 C4  C3  SING N N 13 
9X2 C4  N1  SING N N 14 
9X2 C5  N1  SING N N 15 
9X2 C5  C6  SING N N 16 
9X2 N1  C7  SING N N 17 
9X2 C7  O1  DOUB N N 18 
9X2 C7  N2  SING N N 19 
9X2 C14 C15 SING N N 20 
9X2 C14 C13 SING N N 21 
9X2 O2  C12 DOUB N N 22 
9X2 C21 C15 DOUB Y N 23 
9X2 C21 C20 SING Y N 24 
9X2 N2  C8  SING N N 25 
9X2 C15 C16 SING Y N 26 
9X2 C12 N5  SING N N 27 
9X2 C12 C9  SING N N 28 
9X2 C13 N5  SING N N 29 
9X2 C13 C17 SING N N 30 
9X2 C20 C19 DOUB Y N 31 
9X2 C8  C9  DOUB Y N 32 
9X2 C8  N4  SING Y N 33 
9X2 C9  N3  SING Y N 34 
9X2 C16 C17 SING N N 35 
9X2 C16 C18 DOUB Y N 36 
9X2 N4  C11 DOUB Y N 37 
9X2 C19 C18 SING Y N 38 
9X2 N3  C10 DOUB Y N 39 
9X2 C11 C10 SING Y N 40 
9X2 C4  H1  SING N N 41 
9X2 C4  H2  SING N N 42 
9X2 C5  H3  SING N N 43 
9X2 C5  H4  SING N N 44 
9X2 C6  H5  SING N N 45 
9X2 C6  H6  SING N N 46 
9X2 C10 H7  SING N N 47 
9X2 C13 H8  SING N N 48 
9X2 C17 H9  SING N N 49 
9X2 C17 H10 SING N N 50 
9X2 C20 H11 SING N N 51 
9X2 C21 H12 SING N N 52 
9X2 C22 H13 SING N N 53 
9X2 C24 H14 SING N N 54 
9X2 C24 H15 SING N N 55 
9X2 N   H16 SING N N 56 
9X2 C1  H17 SING N N 57 
9X2 C1  H18 SING N N 58 
9X2 C11 H19 SING N N 59 
9X2 C14 H20 SING N N 60 
9X2 C14 H21 SING N N 61 
9X2 C18 H22 SING N N 62 
9X2 C19 H23 SING N N 63 
9X2 C2  H24 SING N N 64 
9X2 C23 H25 SING N N 65 
9X2 C23 H26 SING N N 66 
9X2 C25 H27 SING N N 67 
9X2 C25 H28 SING N N 68 
9X2 C3  H29 SING N N 69 
9X2 C3  H30 SING N N 70 
9X2 N2  H31 SING N N 71 
9X2 N5  H32 SING N N 72 
9X2 N6  H33 SING N N 73 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
9X2 InChI            InChI                1.06  "InChI=1S/C26H33N7O3/c34-24(21-6-3-9-27-21)30-16-17-7-12-33(13-8-17)26(36)32-23-22(28-10-11-29-23)25(35)31-20-14-18-4-1-2-5-19(18)15-20/h1-2,4-5,10-11,17,20-21,27H,3,6-9,12-16H2,(H,30,34)(H,31,35)(H,29,32,36)/t21-/m0/s1" 
9X2 InChIKey         InChI                1.06  QNPSQJVBCHAUGT-NRFANRHFSA-N                                                                                                                                                                                                  
9X2 SMILES_CANONICAL CACTVS               3.385 "O=C(NCC1CCN(CC1)C(=O)Nc2nccnc2C(=O)NC3Cc4ccccc4C3)[C@@H]5CCCN5"                                                                                                                                                             
9X2 SMILES           CACTVS               3.385 "O=C(NCC1CCN(CC1)C(=O)Nc2nccnc2C(=O)NC3Cc4ccccc4C3)[CH]5CCCN5"                                                                                                                                                               
9X2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)CC(C2)NC(=O)c3c(nccn3)NC(=O)N4CCC(CC4)CNC(=O)[C@@H]5CCCN5"                                                                                                                                                       
9X2 SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)CC(C2)NC(=O)c3c(nccn3)NC(=O)N4CCC(CC4)CNC(=O)C5CCCN5"                                                                                                                                                            
# 
_pdbx_chem_comp_identifier.comp_id           9X2 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "~{N}-(2,3-dihydro-1~{H}-inden-2-yl)-3-[[4-[[[(2~{S})-pyrrolidin-2-yl]carbonylamino]methyl]piperidin-1-yl]carbonylamino]pyrazine-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
9X2 "Create component"  2021-11-22 PDBE 
9X2 "Initial release"   2021-12-08 RCSB 
9X2 "Modify descriptor" 2022-08-22 RCSB 
# 
