data_952
# 
_chem_comp.id                                    952 
_chem_comp.name                                  "5-methyl-1-[(3~{S})-1-[(3-phenoxyphenyl)methyl]piperidin-3-yl]pyrimidine-2,4-dione" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H25 N3 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-04-21 
_chem_comp.pdbx_modified_date                    2018-03-16 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        391.463 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     952 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5NQ5 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
952 O2  O1  O 0 1 N N N -24.826 28.552 -12.082 -7.911 0.886  -0.807 O2  952 1  
952 C22 C1  C 0 1 N N N -24.776 29.388 -11.182 -6.757 0.705  -0.464 C22 952 2  
952 C1  C2  C 0 1 N N N -24.074 29.218 -9.928  -5.997 1.770  0.078  C1  952 3  
952 C   C3  C 0 1 N N N -23.328 27.935 -9.685  -6.607 3.138  0.239  C   952 4  
952 N2  N1  N 0 1 N N N -25.432 30.597 -11.328 -6.192 -0.512 -0.593 N2  952 5  
952 C21 C4  C 0 1 N N N -25.482 31.627 -10.424 -4.916 -0.712 -0.214 C21 952 6  
952 O1  O2  O 0 1 N N N -26.082 32.667 -10.654 -4.420 -1.815 -0.336 O1  952 7  
952 N   N2  N 0 1 N N N -24.795 31.399 -9.252  -4.182 0.293  0.298  N   952 8  
952 C2  C5  C 0 1 N N N -24.119 30.218 -9.035  -4.720 1.542  0.451  C2  952 9  
952 C3  C6  C 0 1 N N S -24.782 32.468 -8.231  -2.796 0.046  0.702  C3  952 10 
952 C7  C7  C 0 1 N N N -23.397 33.072 -8.194  -1.988 -0.428 -0.508 C7  952 11 
952 N1  N3  N 0 1 N N N -23.290 34.148 -7.204  -0.603 -0.696 -0.099 N1  952 12 
952 C6  C8  C 0 1 N N N -23.637 33.649 -5.867  -0.543 -1.764 0.907  C6  952 13 
952 C5  C9  C 0 1 N N N -25.021 33.041 -5.826  -1.308 -1.330 2.159  C5  952 14 
952 C4  C10 C 0 1 N N N -25.140 31.926 -6.857  -2.764 -1.036 1.786  C4  952 15 
952 C8  C11 C 0 1 N N N -21.951 34.753 -7.201  0.236  -1.020 -1.261 C8  952 16 
952 C9  C12 C 0 1 Y N N -21.603 35.475 -8.482  1.684  -1.047 -0.844 C9  952 17 
952 C14 C13 C 0 1 Y N N -20.481 35.118 -9.212  2.252  -2.225 -0.396 C14 952 18 
952 C13 C14 C 0 1 Y N N -20.150 35.789 -10.376 3.580  -2.253 -0.013 C13 952 19 
952 C12 C15 C 0 1 Y N N -20.933 36.836 -10.829 4.343  -1.104 -0.076 C12 952 20 
952 C11 C16 C 0 1 Y N N -22.050 37.201 -10.098 3.775  0.081  -0.525 C11 952 21 
952 C10 C17 C 0 1 Y N N -22.394 36.522 -8.938  2.444  0.105  -0.914 C10 952 22 
952 O   O3  O 0 1 N N N -22.817 38.301 -10.486 4.523  1.213  -0.588 O   952 23 
952 C15 C18 C 0 1 Y N N -23.631 38.227 -11.618 5.827  1.138  -0.213 C15 952 24 
952 C20 C19 C 0 1 Y N N -23.949 39.402 -12.278 6.804  0.832  -1.150 C20 952 25 
952 C19 C20 C 0 1 Y N N -24.789 39.358 -13.377 8.128  0.756  -0.766 C19 952 26 
952 C18 C21 C 0 1 Y N N -25.302 38.157 -13.815 8.481  0.985  0.551  C18 952 27 
952 C17 C22 C 0 1 Y N N -24.975 36.989 -13.159 7.510  1.290  1.487  C17 952 28 
952 C16 C23 C 0 1 Y N N -24.137 37.014 -12.057 6.185  1.373  1.107  C16 952 29 
952 H2  H1  H 0 1 N N N -22.854 27.968 -8.693  -7.638 3.121  -0.115 H2  952 30 
952 H1  H2  H 0 1 N N N -24.030 27.089 -9.728  -6.589 3.423  1.291  H1  952 31 
952 H3  H3  H 0 1 N N N -22.554 27.809 -10.457 -6.035 3.861  -0.343 H3  952 32 
952 H24 H4  H 0 1 N N N -25.924 30.735 -12.188 -6.707 -1.248 -0.961 H24 952 33 
952 H4  H5  H 0 1 N N N -23.598 30.091 -8.097  -4.125 2.342  0.867  H4  952 34 
952 H   H6  H 0 1 N N N -25.507 33.248 -8.507  -2.361 0.966  1.092  H   952 35 
952 H12 H7  H 0 1 N N N -22.673 32.284 -7.940  -2.432 -1.340 -0.907 H12 952 36 
952 H11 H8  H 0 1 N N N -23.162 33.480 -9.188  -1.996 0.345  -1.276 H11 952 37 
952 H9  H10 H 0 1 N N N -22.904 32.883 -5.574  -0.994 -2.670 0.502  H9  952 38 
952 H10 H11 H 0 1 N N N -23.597 34.486 -5.155  0.497  -1.961 1.166  H10 952 39 
952 H8  H12 H 0 1 N N N -25.766 33.820 -6.046  -1.277 -2.130 2.900  H8  952 40 
952 H7  H13 H 0 1 N N N -25.207 32.629 -4.823  -0.849 -0.433 2.573  H7  952 41 
952 H6  H14 H 0 1 N N N -26.172 31.547 -6.870  -3.302 -0.684 2.667  H6  952 42 
952 H5  H15 H 0 1 N N N -24.452 31.109 -6.594  -3.234 -1.944 1.408  H5  952 43 
952 H14 H16 H 0 1 N N N -21.211 33.955 -7.041  -0.048 -1.997 -1.653 H14 952 44 
952 H13 H17 H 0 1 N N N -21.898 35.474 -6.372  0.094  -0.264 -2.033 H13 952 45 
952 H18 H18 H 0 1 N N N -19.857 34.306 -8.868  1.657  -3.125 -0.346 H18 952 46 
952 H17 H19 H 0 1 N N N -19.274 35.493 -10.935 4.021  -3.175 0.336  H17 952 47 
952 H16 H20 H 0 1 N N N -20.677 37.360 -11.738 5.380  -1.126 0.223  H16 952 48 
952 H15 H21 H 0 1 N N N -23.279 36.808 -8.388  1.999  1.025  -1.264 H15 952 49 
952 H23 H22 H 0 1 N N N -23.545 40.344 -11.938 6.528  0.653  -2.179 H23 952 50 
952 H22 H23 H 0 1 N N N -25.044 40.271 -13.894 8.889  0.518  -1.495 H22 952 51 
952 H21 H24 H 0 1 N N N -25.960 38.130 -14.671 9.518  0.926  0.850  H21 952 52 
952 H20 H25 H 0 1 N N N -25.375 36.048 -13.507 7.789  1.468  2.516  H20 952 53 
952 H19 H26 H 0 1 N N N -23.881 36.098 -11.545 5.427  1.611  1.838  H19 952 54 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
952 C18 C19 DOUB Y N 1  
952 C18 C17 SING Y N 2  
952 C19 C20 SING Y N 3  
952 C17 C16 DOUB Y N 4  
952 C20 C15 DOUB Y N 5  
952 O2  C22 DOUB N N 6  
952 C16 C15 SING Y N 7  
952 C15 O   SING N N 8  
952 N2  C22 SING N N 9  
952 N2  C21 SING N N 10 
952 C22 C1  SING N N 11 
952 C12 C13 DOUB Y N 12 
952 C12 C11 SING Y N 13 
952 O1  C21 DOUB N N 14 
952 O   C11 SING N N 15 
952 C21 N   SING N N 16 
952 C13 C14 SING Y N 17 
952 C11 C10 DOUB Y N 18 
952 C1  C   SING N N 19 
952 C1  C2  DOUB N N 20 
952 N   C2  SING N N 21 
952 N   C3  SING N N 22 
952 C14 C9  DOUB Y N 23 
952 C10 C9  SING Y N 24 
952 C9  C8  SING N N 25 
952 C3  C7  SING N N 26 
952 C3  C4  SING N N 27 
952 C7  N1  SING N N 28 
952 N1  C8  SING N N 29 
952 N1  C6  SING N N 30 
952 C4  C5  SING N N 31 
952 C6  C5  SING N N 32 
952 C   H2  SING N N 33 
952 C   H1  SING N N 34 
952 C   H3  SING N N 35 
952 N2  H24 SING N N 36 
952 C2  H4  SING N N 37 
952 C3  H   SING N N 38 
952 C7  H12 SING N N 39 
952 C7  H11 SING N N 40 
952 C6  H9  SING N N 41 
952 C6  H10 SING N N 42 
952 C5  H8  SING N N 43 
952 C5  H7  SING N N 44 
952 C4  H6  SING N N 45 
952 C4  H5  SING N N 46 
952 C8  H14 SING N N 47 
952 C8  H13 SING N N 48 
952 C14 H18 SING N N 49 
952 C13 H17 SING N N 50 
952 C12 H16 SING N N 51 
952 C10 H15 SING N N 52 
952 C20 H23 SING N N 53 
952 C19 H22 SING N N 54 
952 C18 H21 SING N N 55 
952 C17 H20 SING N N 56 
952 C16 H19 SING N N 57 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
952 InChI            InChI                1.03  "InChI=1S/C23H25N3O3/c1-17-14-26(23(28)24-22(17)27)19-8-6-12-25(16-19)15-18-7-5-11-21(13-18)29-20-9-3-2-4-10-20/h2-5,7,9-11,13-14,19H,6,8,12,15-16H2,1H3,(H,24,27,28)/t19-/m0/s1" 
952 InChIKey         InChI                1.03  UVSXXFBEAJISCP-IBGZPJMESA-N                                                                                                                                                       
952 SMILES_CANONICAL CACTVS               3.385 "CC1=CN([C@H]2CCCN(C2)Cc3cccc(Oc4ccccc4)c3)C(=O)NC1=O"                                                                                                                            
952 SMILES           CACTVS               3.385 "CC1=CN([CH]2CCCN(C2)Cc3cccc(Oc4ccccc4)c3)C(=O)NC1=O"                                                                                                                             
952 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC1=CN(C(=O)NC1=O)[C@H]2CCCN(C2)Cc3cccc(c3)Oc4ccccc4"                                                                                                                            
952 SMILES           "OpenEye OEToolkits" 2.0.6 "CC1=CN(C(=O)NC1=O)C2CCCN(C2)Cc3cccc(c3)Oc4ccccc4"                                                                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
952 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "5-methyl-1-[(3~{S})-1-[(3-phenoxyphenyl)methyl]piperidin-3-yl]pyrimidine-2,4-dione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
952 "Create component" 2017-04-21 RCSB 
952 "Initial release"  2018-03-21 RCSB 
# 
