data_7Y2
# 
_chem_comp.id                                    7Y2 
_chem_comp.name                                  "N-[(benzyloxy)carbonyl]-2-methyl-L-alanyl-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-4-methyl-L-leucinamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H40 N4 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-08-23 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        504.619 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     7Y2 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7RVV 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
7Y2 C1  C1  C 0 1 Y N N N N N -30.610 18.032 -7.099 6.892  4.309  1.258  C1  7Y2 1  
7Y2 C10 C2  C 0 1 N N N N N N -24.686 12.597 -3.810 2.824  -2.763 -2.668 C10 7Y2 2  
7Y2 C11 C3  C 0 1 N N N N N N -24.778 13.947 -3.118 2.229  -2.441 -1.295 C11 7Y2 3  
7Y2 C12 C4  C 0 1 N N N N N N -23.370 14.348 -2.737 0.727  -2.388 -1.398 C12 7Y2 4  
7Y2 C14 C5  C 0 1 N N S N N N -21.912 15.175 -0.962 -1.433 -1.519 -0.679 C14 7Y2 5  
7Y2 C15 C6  C 0 1 N N N N N N -21.365 13.953 -0.291 -1.943 -0.450 0.253  C15 7Y2 6  
7Y2 C17 C7  C 0 1 N N S N N N -19.616 12.210 -0.471 -3.751 0.890  1.186  C17 7Y2 7  
7Y2 C19 C8  C 0 1 N N N N N N -18.895 11.499 -1.629 -5.040 1.489  0.619  C19 7Y2 8  
7Y2 C2  C9  C 0 1 Y N N N N N -29.542 18.481 -7.878 6.650  3.304  2.176  C2  7Y2 9  
7Y2 C20 C10 C 0 1 N N S N N N -19.891 11.194 -2.766 -4.737 2.194  -0.704 C20 7Y2 10 
7Y2 C21 C11 C 0 1 N N N N N N -20.716 9.939  -2.451 -3.824 3.420  -0.467 C21 7Y2 11 
7Y2 C22 C12 C 0 1 N N N N N N -20.884 9.235  -3.789 -4.374 4.428  -1.500 C22 7Y2 12 
7Y2 C23 C13 C 0 1 N N N N N N -21.959 17.878 -1.932 -2.542 -2.168 2.013  C23 7Y2 13 
7Y2 C24 C14 C 0 1 N N N N N N -19.333 10.919 -4.144 -6.000 2.782  -1.293 C24 7Y2 14 
7Y2 C27 C15 C 0 1 N N N N N N -18.622 12.838 0.506  -4.034 0.277  2.558  C27 7Y2 15 
7Y2 C3  C16 C 0 1 Y N N N N N -28.219 18.251 -7.490 6.347  2.028  1.740  C3  7Y2 16 
7Y2 C30 C17 C 0 1 N N N N N N -25.653 13.843 -1.864 2.634  -3.528 -0.297 C30 7Y2 17 
7Y2 C34 C18 C 0 1 N N N N N N -22.009 16.344 0.042  -2.116 -2.848 -0.353 C34 7Y2 18 
7Y2 C35 C19 C 0 1 N N N N N N -22.494 17.687 -0.535 -1.865 -3.204 1.114  C35 7Y2 19 
7Y2 C36 C20 C 0 1 N N N N N N -24.008 17.797 -0.563 -0.359 -3.210 1.387  C36 7Y2 20 
7Y2 C37 C21 C 0 1 N N N N N N -21.960 18.868 0.250  -2.442 -4.590 1.408  C37 7Y2 21 
7Y2 C4  C22 C 0 1 Y N N N N N -27.959 17.570 -6.310 6.287  1.757  0.386  C4  7Y2 22 
7Y2 C5  C23 C 0 1 Y N N N N N -29.022 17.115 -5.535 6.530  2.762  -0.532 C5  7Y2 23 
7Y2 C6  C24 C 0 1 Y N N N N N -30.343 17.345 -5.919 6.833  4.038  -0.096 C6  7Y2 24 
7Y2 C7  C25 C 0 1 N N N N N N -26.534 17.317 -5.886 5.958  0.365  -0.090 C7  7Y2 25 
7Y2 C9  C26 C 0 1 N N N N N N -25.344 16.207 -3.973 4.057  -0.957 -0.669 C9  7Y2 26 
7Y2 N10 N1  N 0 1 N N N N N N -25.419 14.871 -4.037 2.733  -1.145 -0.836 N10 7Y2 27 
7Y2 N13 N2  N 0 1 N N N N N N -23.203 14.843 -1.523 0.016  -1.661 -0.514 N13 7Y2 28 
7Y2 N16 N3  N 0 1 N N N N N N -20.507 13.232 -1.009 -3.256 -0.149 0.279  N16 7Y2 29 
7Y2 N23 N4  N 0 1 N N N N N N -20.115 10.029 -4.736 -5.770 4.034  -1.726 N23 7Y2 30 
7Y2 O26 O1  O 0 1 N N N N N N -18.315 11.406 -4.625 -7.065 2.207  -1.366 O26 7Y2 31 
7Y2 O28 O2  O 0 1 N N N N N N -18.217 11.936 1.554  -5.101 -0.668 2.447  O28 7Y2 32 
7Y2 O29 O3  O 0 1 N N N N N N -24.382 16.822 -3.535 4.833  -1.863 -0.900 O29 7Y2 33 
7Y2 O33 O4  O 0 1 N N N N N N -22.451 14.238 -3.509 0.157  -3.001 -2.276 O33 7Y2 34 
7Y2 O38 O5  O 0 1 N N N N N N -21.726 13.674 0.838  -1.171 0.138  0.980  O38 7Y2 35 
7Y2 O8  O6  O 0 1 N N N N N N -26.468 16.979 -4.499 4.521  0.235  -0.247 O8  7Y2 36 
7Y2 H1  H1  H 0 1 N N N N N N -31.629 18.215 -7.408 7.124  5.307  1.599  H1  7Y2 37 
7Y2 H2  H2  H 0 1 N N N N N N -24.203 11.872 -3.138 2.535  -1.988 -3.379 H2  7Y2 38 
7Y2 H3  H3  H 0 1 N N N N N N -25.697 12.245 -4.063 3.910  -2.801 -2.593 H3  7Y2 39 
7Y2 H4  H4  H 0 1 N N N N N N -24.091 12.696 -4.730 2.449  -3.727 -3.009 H4  7Y2 40 
7Y2 H5  H5  H 0 1 N N N N N N -21.227 15.472 -1.770 -1.656 -1.239 -1.709 H5  7Y2 41 
7Y2 H6  H6  H 0 1 N N N N N N -20.210 11.462 0.074  -3.000 1.674  1.285  H6  7Y2 42 
7Y2 H7  H7  H 0 1 N N N N N N -18.461 10.557 -1.263 -5.766 0.694  0.449  H7  7Y2 43 
7Y2 H8  H8  H 0 1 N N N N N N -18.094 12.148 -2.012 -5.450 2.208  1.329  H8  7Y2 44 
7Y2 H9  H9  H 0 1 N N N N N N -29.741 19.015 -8.795 6.697  3.516  3.234  H9  7Y2 45 
7Y2 H10 H10 H 0 1 N N N N N N -20.585 12.044 -2.841 -4.272 1.503  -1.406 H10 7Y2 46 
7Y2 H11 H11 H 0 1 N N N N N N -21.695 10.215 -2.033 -3.937 3.800  0.548  H11 7Y2 47 
7Y2 H12 H12 H 0 1 N N N N N N -20.182 9.293  -1.738 -2.782 3.176  -0.676 H12 7Y2 48 
7Y2 H13 H13 H 0 1 N N N N N N -21.944 9.207  -4.080 -4.328 5.441  -1.100 H13 7Y2 49 
7Y2 H14 H14 H 0 1 N N N N N N -20.491 8.209  -3.737 -3.808 4.363  -2.429 H14 7Y2 50 
7Y2 H15 H15 H 0 1 N N N N N N -20.862 17.799 -1.919 -3.531 -1.936 1.618  H15 7Y2 51 
7Y2 H16 H16 H 0 1 N N N N N N -22.374 17.103 -2.593 -2.638 -2.570 3.022  H16 7Y2 52 
7Y2 H17 H17 H 0 1 N N N N N N -22.251 18.871 -2.304 -1.939 -1.261 2.040  H17 7Y2 53 
7Y2 H18 H18 H 0 1 N N N N N N -17.728 13.148 -0.055 -3.139 -0.227 2.922  H18 7Y2 54 
7Y2 H19 H19 H 0 1 N Y N N N N -19.092 13.721 0.965  -4.318 1.064  3.257  H19 7Y2 55 
7Y2 H20 H20 H 0 1 N N N N N N -27.404 18.602 -8.106 6.158  1.243  2.457  H20 7Y2 56 
7Y2 H21 H21 H 0 1 N N N N N N -25.189 13.147 -1.149 3.721  -3.567 -0.222 H21 7Y2 57 
7Y2 H22 H22 H 0 1 N N N N N N -25.748 14.836 -1.400 2.210  -3.299 0.681  H22 7Y2 58 
7Y2 H23 H23 H 0 1 N N N N N N -26.650 13.471 -2.143 2.259  -4.493 -0.639 H23 7Y2 59 
7Y2 H24 H24 H 0 1 N N N N N N -22.707 16.047 0.838  -3.188 -2.758 -0.527 H24 7Y2 60 
7Y2 H25 H25 H 0 1 N N N N N N -21.009 16.503 0.472  -1.709 -3.632 -0.992 H25 7Y2 61 
7Y2 H26 H26 H 0 1 N N N N N N -24.405 17.659 0.453  -0.157 -3.780 2.294  H26 7Y2 62 
7Y2 H27 H27 H 0 1 N N N N N N -24.296 18.790 -0.937 0.160  -3.670 0.546  H27 7Y2 63 
7Y2 H28 H28 H 0 1 N N N N N N -24.420 17.022 -1.226 -0.009 -2.186 1.515  H28 7Y2 64 
7Y2 H29 H29 H 0 1 N N N N N N -22.308 18.804 1.292  -3.515 -4.586 1.214  H29 7Y2 65 
7Y2 H30 H30 H 0 1 N N N N N N -20.860 18.855 0.229  -1.960 -5.328 0.767  H30 7Y2 66 
7Y2 H31 H31 H 0 1 N N N N N N -22.324 19.803 -0.201 -2.263 -4.844 2.453  H31 7Y2 67 
7Y2 H32 H32 H 0 1 N N N N N N -28.821 16.575 -4.622 6.483  2.550  -1.590 H32 7Y2 68 
7Y2 H33 H33 H 0 1 N N N N N N -31.156 16.991 -5.302 7.018  4.824  -0.813 H33 7Y2 69 
7Y2 H34 H34 H 0 1 N N N N N N -26.124 16.487 -6.479 6.446  0.184  -1.048 H34 7Y2 70 
7Y2 H35 H35 H 0 1 N N N N N N -25.938 18.224 -6.064 6.311  -0.362 0.641  H35 7Y2 71 
7Y2 H36 H36 H 0 1 N N N N N N -25.961 14.477 -4.779 2.114  -0.421 -0.652 H36 7Y2 72 
7Y2 H37 H37 H 0 1 N N N N N N -24.015 14.997 -0.960 0.463  -1.230 0.231  H37 7Y2 73 
7Y2 H38 H38 H 0 1 N N N N N N -20.470 13.404 -1.993 -3.873 -0.619 -0.303 H38 7Y2 74 
7Y2 H39 H39 H 0 1 N N N N N N -20.171 9.915  -5.728 -6.440 4.603  -2.134 H39 7Y2 75 
7Y2 H40 H40 H 0 1 N N N N N N -17.602 12.375 2.130  -5.334 -1.097 3.282  H40 7Y2 76 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
7Y2 C2  C3  DOUB Y N 1  
7Y2 C2  C1  SING Y N 2  
7Y2 C3  C4  SING Y N 3  
7Y2 C1  C6  DOUB Y N 4  
7Y2 C4  C7  SING N N 5  
7Y2 C4  C5  DOUB Y N 6  
7Y2 C6  C5  SING Y N 7  
7Y2 C7  O8  SING N N 8  
7Y2 N23 C24 SING N N 9  
7Y2 N23 C22 SING N N 10 
7Y2 O26 C24 DOUB N N 11 
7Y2 O8  C9  SING N N 12 
7Y2 C24 C20 SING N N 13 
7Y2 N10 C9  SING N N 14 
7Y2 N10 C11 SING N N 15 
7Y2 C9  O29 DOUB N N 16 
7Y2 C10 C11 SING N N 17 
7Y2 C22 C21 SING N N 18 
7Y2 O33 C12 DOUB N N 19 
7Y2 C11 C12 SING N N 20 
7Y2 C11 C30 SING N N 21 
7Y2 C20 C21 SING N N 22 
7Y2 C20 C19 SING N N 23 
7Y2 C12 N13 SING N N 24 
7Y2 C23 C35 SING N N 25 
7Y2 C19 C17 SING N N 26 
7Y2 N13 C14 SING N N 27 
7Y2 N16 C17 SING N N 28 
7Y2 N16 C15 SING N N 29 
7Y2 C14 C15 SING N N 30 
7Y2 C14 C34 SING N N 31 
7Y2 C36 C35 SING N N 32 
7Y2 C35 C34 SING N N 33 
7Y2 C35 C37 SING N N 34 
7Y2 C17 C27 SING N N 35 
7Y2 C15 O38 DOUB N N 36 
7Y2 C27 O28 SING N N 37 
7Y2 C1  H1  SING N N 38 
7Y2 C10 H2  SING N N 39 
7Y2 C10 H3  SING N N 40 
7Y2 C10 H4  SING N N 41 
7Y2 C14 H5  SING N N 42 
7Y2 C17 H6  SING N N 43 
7Y2 C19 H7  SING N N 44 
7Y2 C19 H8  SING N N 45 
7Y2 C2  H9  SING N N 46 
7Y2 C20 H10 SING N N 47 
7Y2 C21 H11 SING N N 48 
7Y2 C21 H12 SING N N 49 
7Y2 C22 H13 SING N N 50 
7Y2 C22 H14 SING N N 51 
7Y2 C23 H15 SING N N 52 
7Y2 C23 H16 SING N N 53 
7Y2 C23 H17 SING N N 54 
7Y2 C27 H18 SING N N 55 
7Y2 C27 H19 SING N N 56 
7Y2 C3  H20 SING N N 57 
7Y2 C30 H21 SING N N 58 
7Y2 C30 H22 SING N N 59 
7Y2 C30 H23 SING N N 60 
7Y2 C34 H24 SING N N 61 
7Y2 C34 H25 SING N N 62 
7Y2 C36 H26 SING N N 63 
7Y2 C36 H27 SING N N 64 
7Y2 C36 H28 SING N N 65 
7Y2 C37 H29 SING N N 66 
7Y2 C37 H30 SING N N 67 
7Y2 C37 H31 SING N N 68 
7Y2 C5  H32 SING N N 69 
7Y2 C6  H33 SING N N 70 
7Y2 C7  H34 SING N N 71 
7Y2 C7  H35 SING N N 72 
7Y2 N10 H36 SING N N 73 
7Y2 N13 H37 SING N N 74 
7Y2 N16 H38 SING N N 75 
7Y2 N23 H39 SING N N 76 
7Y2 O28 H40 SING N N 77 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
7Y2 SMILES           ACDLabs              12.01 "O=C(OCc1ccccc1)NC(C)(C)C(=O)NC(CC(C)(C)C)C(=O)NC(CC1CCNC1=O)CO"                                                                                                                                                      
7Y2 InChI            InChI                1.03  "InChI=1S/C26H40N4O6/c1-25(2,3)14-20(22(33)28-19(15-31)13-18-11-12-27-21(18)32)29-23(34)26(4,5)30-24(35)36-16-17-9-7-6-8-10-17/h6-10,18-20,31H,11-16H2,1-5H3,(H,27,32)(H,28,33)(H,29,34)(H,30,35)/t18-,19-,20-/m0/s1" 
7Y2 InChIKey         InChI                1.03  IGYKFNIEXCKNFT-UFYCRDLUSA-N                                                                                                                                                                                           
7Y2 SMILES_CANONICAL CACTVS               3.385 "CC(C)(C)C[C@H](NC(=O)C(C)(C)NC(=O)OCc1ccccc1)C(=O)N[C@H](CO)C[C@@H]2CCNC2=O"                                                                                                                                         
7Y2 SMILES           CACTVS               3.385 "CC(C)(C)C[CH](NC(=O)C(C)(C)NC(=O)OCc1ccccc1)C(=O)N[CH](CO)C[CH]2CCNC2=O"                                                                                                                                             
7Y2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)CO)NC(=O)C(C)(C)NC(=O)OCc2ccccc2"                                                                                                                                       
7Y2 SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)(C)CC(C(=O)NC(CC1CCNC1=O)CO)NC(=O)C(C)(C)NC(=O)OCc2ccccc2"                                                                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
7Y2 "SYSTEMATIC NAME" ACDLabs              12.01 "N-[(benzyloxy)carbonyl]-2-methyl-L-alanyl-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-4-methyl-L-leucinamide"                                                                                       
7Y2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(phenylmethyl) ~{N}-[1-[[(2~{S})-4,4-dimethyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]pentan-2-yl]amino]-2-methyl-1-oxidanylidene-propan-2-yl]carbamate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
7Y2 "Create component" 2021-08-23 RCSB 
7Y2 "Initial release"  2022-07-20 RCSB 
7Y2 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            7Y2 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C27 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
