data_6Y2
# 
_chem_comp.id                                    6Y2 
_chem_comp.name                                  "~{N}-[(2~{S},3~{R},4~{R},5~{R},6~{R})-2-[(2~{R},3~{S},4~{R},5~{R},6~{S})-5-acetamido-2-(hydroxymethyl)-6-(4-nitrophenoxy)-4-oxidanyl-oxan-3-yl]oxy-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-3-yl]ethanamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H31 N3 O13" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-07-21 
_chem_comp.pdbx_modified_date                    2016-09-09 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        545.494 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     6Y2 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5KXE 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
6Y2 CAB C1  C 0  1 Y N N 35.384 89.370 62.649 -4.143 0.581  0.211  CAB 6Y2 1  
6Y2 CAC C2  C 0  1 Y N N 34.115 89.416 63.253 -5.341 1.078  0.705  CAC 6Y2 2  
6Y2 CAD C3  C 0  1 Y N N 32.999 88.880 62.603 -6.445 0.254  0.794  CAD 6Y2 3  
6Y2 CAE C4  C 0  1 Y N N 33.146 88.280 61.340 -6.358 -1.066 0.392  CAE 6Y2 4  
6Y2 CAF C5  C 0  1 Y N N 34.410 88.234 60.733 -5.166 -1.564 -0.100 CAF 6Y2 5  
6Y2 CAG C6  C 0  1 Y N N 35.511 88.767 61.376 -4.060 -0.742 -0.197 CAG 6Y2 6  
6Y2 CAL C7  C 0  1 N N S 37.588 90.331 62.620 -1.856 0.811  -0.395 CAL 6Y2 7  
6Y2 CAO C8  C 0  1 N N R 38.510 91.151 63.494 -0.785 1.895  -0.536 CAO 6Y2 8  
6Y2 CAW C9  C 0  1 N N S 40.383 90.243 62.175 0.933  0.149  -0.060 CAW 6Y2 9  
6Y2 CBA C10 C 0  1 N N R 39.422 89.313 61.493 -0.205 -0.868 0.062  CBA 6Y2 10 
6Y2 CBK C11 C 0  1 N N N 43.617 86.644 59.314 2.861  -4.515 -1.674 CBK 6Y2 11 
6Y2 CBG C12 C 0  1 N N N 43.490 88.156 59.124 3.292  -3.081 -1.503 CBG 6Y2 12 
6Y2 OBH O1  O 0  1 N N N 43.239 88.646 58.006 3.053  -2.269 -2.371 OBH 6Y2 13 
6Y2 N2  N1  N 0  1 N N N 43.607 88.862 60.258 3.942  -2.702 -0.385 N2  6Y2 14 
6Y2 C2  C13 C 0  1 N N R 43.470 90.320 60.270 4.360  -1.308 -0.219 C2  6Y2 15 
6Y2 C3  C14 C 0  1 N N R 44.876 90.935 60.372 5.553  -1.243 0.740  C3  6Y2 16 
6Y2 O3  O2  O 0  1 N N N 45.544 90.654 59.160 6.663  -1.941 0.170  O3  6Y2 17 
6Y2 C4  C15 C 0  1 N N R 44.764 92.439 60.610 5.932  0.224  0.967  C4  6Y2 18 
6Y2 O4  O3  O 0  1 N N N 44.134 93.061 59.469 6.350  0.806  -0.270 O4  6Y2 19 
6Y2 C5  C16 C 0  1 N N R 43.904 92.691 61.880 4.714  0.980  1.503  C5  6Y2 20 
6Y2 C6  C17 C 0  1 N N N 43.850 94.156 62.141 5.067  2.459  1.675  C6  6Y2 21 
6Y2 O6  O4  O 0  1 N N N 43.075 94.273 63.339 3.970  3.143  2.284  O6  6Y2 22 
6Y2 O5  O5  O 0  1 N N N 42.557 92.182 61.640 3.632  0.854  0.578  O5  6Y2 23 
6Y2 C1  C18 C 0  1 N N S 42.613 90.745 61.470 3.203  -0.492 0.363  C1  6Y2 24 
6Y2 O1  O6  O 0  1 N N N 41.334 90.470 61.138 2.106  -0.502 -0.552 O1  6Y2 25 
6Y2 OBB O7  O 0  1 N N N 38.250 89.109 62.289 -1.392 -0.202 0.500  OBB 6Y2 26 
6Y2 CBE C19 C 0  1 N N N 40.187 87.980 61.373 0.180  -1.944 1.079  CBE 6Y2 27 
6Y2 OBF O8  O 0  1 N N N 39.316 86.945 60.997 -0.825 -2.960 1.101  OBF 6Y2 28 
6Y2 CAS C20 C 0  1 N N R 39.707 91.509 62.648 0.515  1.256  -1.034 CAS 6Y2 29 
6Y2 OAT O9  O 0  1 N N N 40.625 92.297 63.425 1.542  2.248  -1.099 OAT 6Y2 30 
6Y2 NAP N2  N 0  1 N N N 37.843 92.381 63.920 -1.233 2.905  -1.498 NAP 6Y2 31 
6Y2 CBI C21 C 0  1 N N N 37.368 92.564 65.173 -2.022 3.919  -1.091 CBI 6Y2 32 
6Y2 OBJ O10 O 0  1 N N N 37.399 91.730 66.064 -2.360 3.997  0.071  OBJ 6Y2 33 
6Y2 CBL C22 C 0  1 N N N 36.735 93.914 65.467 -2.484 4.958  -2.081 CBL 6Y2 34 
6Y2 OAA O11 O 0  1 N N N 36.437 89.925 63.358 -3.055 1.390  0.123  OAA 6Y2 35 
6Y2 NAH N3  N 1  1 N N N 32.094 87.745 60.704 -7.543 -1.948 0.489  NAH 6Y2 36 
6Y2 OAJ O12 O 0  1 N N N 32.327 86.624 59.790 -7.468 -3.111 0.135  OAJ 6Y2 37 
6Y2 OAI O13 O -1 1 N N N 30.738 88.286 60.945 -8.594 -1.510 0.923  OAI 6Y2 38 
6Y2 H1  H1  H 0  1 N N N 34.001 89.869 64.227 -5.409 2.109  1.020  H1  6Y2 39 
6Y2 H2  H2  H 0  1 N N N 32.026 88.927 63.070 -7.378 0.640  1.178  H2  6Y2 40 
6Y2 H3  H3  H 0  1 N N N 34.523 87.780 59.759 -5.100 -2.596 -0.412 H3  6Y2 41 
6Y2 H4  H4  H 0  1 N N N 36.480 88.723 60.901 -3.129 -1.132 -0.581 H4  6Y2 42 
6Y2 H5  H5  H 0  1 N N N 37.312 90.898 61.719 -2.057 0.370  -1.371 H5  6Y2 43 
6Y2 H6  H6  H 0  1 N N N 38.828 90.559 64.365 -0.613 2.365  0.432  H6  6Y2 44 
6Y2 H7  H7  H 0  1 N N N 40.851 89.733 63.030 1.140  0.583  0.917  H7  6Y2 45 
6Y2 H8  H8  H 0  1 N N N 39.168 89.690 60.491 -0.385 -1.331 -0.908 H8  6Y2 46 
6Y2 H9  H9  H 0  1 N N N 43.456 86.138 58.351 3.160  -5.092 -0.799 H9  6Y2 47 
6Y2 H10 H10 H 0  1 N N N 44.623 86.405 59.689 1.777  -4.559 -1.785 H10 6Y2 48 
6Y2 H11 H11 H 0  1 N N N 42.864 86.301 60.039 3.334  -4.933 -2.563 H11 6Y2 49 
6Y2 H12 H12 H 0  1 N N N 43.792 88.382 61.115 4.133  -3.352 0.309  H12 6Y2 50 
6Y2 H13 H13 H 0  1 N N N 42.991 90.664 59.342 4.648  -0.896 -1.186 H13 6Y2 51 
6Y2 H14 H14 H 0  1 N N N 45.404 90.476 61.221 5.282  -1.701 1.691  H14 6Y2 52 
6Y2 H15 H15 H 0  1 N N N 46.420 91.021 59.188 7.455  -1.940 0.725  H15 6Y2 53 
6Y2 H16 H16 H 0  1 N N N 45.769 92.858 60.770 6.745  0.282  1.691  H16 6Y2 54 
6Y2 H17 H17 H 0  1 N N N 44.064 93.997 59.616 6.605  1.736  -0.200 H17 6Y2 55 
6Y2 H18 H18 H 0  1 N N N 44.363 92.173 62.735 4.421  0.562  2.466  H18 6Y2 56 
6Y2 H19 H19 H 0  1 N N N 44.861 94.563 62.290 5.949  2.550  2.309  H19 6Y2 57 
6Y2 H20 H20 H 0  1 N N N 43.362 94.683 61.308 5.274  2.900  0.700  H20 6Y2 58 
6Y2 H21 H21 H 0  1 N N N 42.993 95.189 63.576 4.124  4.087  2.424  H21 6Y2 59 
6Y2 H22 H22 H 0  1 N N N 42.949 90.236 62.385 2.890  -0.930 1.311  H22 6Y2 60 
6Y2 H23 H23 H 0  1 N N N 40.642 87.735 62.344 1.136  -2.385 0.796  H23 6Y2 61 
6Y2 H24 H24 H 0  1 N N N 40.976 88.083 60.614 0.266  -1.496 2.068  H24 6Y2 62 
6Y2 H25 H25 H 0  1 N N N 39.802 86.131 60.927 -0.646 -3.677 1.725  H25 6Y2 63 
6Y2 H26 H26 H 0  1 N N N 39.368 92.082 61.772 0.357  0.829  -2.025 H26 6Y2 64 
6Y2 H27 H27 H 0  1 N N N 40.192 93.090 63.718 1.344  2.980  -1.698 H27 6Y2 65 
6Y2 H28 H28 H 0  1 N N N 37.733 93.120 63.255 -0.963 2.843  -2.427 H28 6Y2 66 
6Y2 H29 H29 H 0  1 N N N 36.378 93.933 66.507 -3.428 4.643  -2.524 H29 6Y2 67 
6Y2 H30 H30 H 0  1 N N N 37.482 94.709 65.321 -2.622 5.911  -1.570 H30 6Y2 68 
6Y2 H31 H31 H 0  1 N N N 35.887 94.077 64.786 -1.735 5.072  -2.865 H31 6Y2 69 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
6Y2 OBH CBG DOUB N N 1  
6Y2 CBG CBK SING N N 2  
6Y2 CBG N2  SING N N 3  
6Y2 O3  C3  SING N N 4  
6Y2 O4  C4  SING N N 5  
6Y2 OAJ NAH DOUB N N 6  
6Y2 N2  C2  SING N N 7  
6Y2 C2  C3  SING N N 8  
6Y2 C2  C1  SING N N 9  
6Y2 C3  C4  SING N N 10 
6Y2 C4  C5  SING N N 11 
6Y2 NAH OAI SING N N 12 
6Y2 NAH CAE SING N N 13 
6Y2 CAF CAE DOUB Y N 14 
6Y2 CAF CAG SING Y N 15 
6Y2 OBF CBE SING N N 16 
6Y2 O1  C1  SING N N 17 
6Y2 O1  CAW SING N N 18 
6Y2 CAE CAD SING Y N 19 
6Y2 CBE CBA SING N N 20 
6Y2 CAG CAB DOUB Y N 21 
6Y2 C1  O5  SING N N 22 
6Y2 CBA CAW SING N N 23 
6Y2 CBA OBB SING N N 24 
6Y2 O5  C5  SING N N 25 
6Y2 C5  C6  SING N N 26 
6Y2 C6  O6  SING N N 27 
6Y2 CAW CAS SING N N 28 
6Y2 OBB CAL SING N N 29 
6Y2 CAD CAC DOUB Y N 30 
6Y2 CAL OAA SING N N 31 
6Y2 CAL CAO SING N N 32 
6Y2 CAS OAT SING N N 33 
6Y2 CAS CAO SING N N 34 
6Y2 CAB CAC SING Y N 35 
6Y2 CAB OAA SING N N 36 
6Y2 CAO NAP SING N N 37 
6Y2 NAP CBI SING N N 38 
6Y2 CBI CBL SING N N 39 
6Y2 CBI OBJ DOUB N N 40 
6Y2 CAC H1  SING N N 41 
6Y2 CAD H2  SING N N 42 
6Y2 CAF H3  SING N N 43 
6Y2 CAG H4  SING N N 44 
6Y2 CAL H5  SING N N 45 
6Y2 CAO H6  SING N N 46 
6Y2 CAW H7  SING N N 47 
6Y2 CBA H8  SING N N 48 
6Y2 CBK H9  SING N N 49 
6Y2 CBK H10 SING N N 50 
6Y2 CBK H11 SING N N 51 
6Y2 N2  H12 SING N N 52 
6Y2 C2  H13 SING N N 53 
6Y2 C3  H14 SING N N 54 
6Y2 O3  H15 SING N N 55 
6Y2 C4  H16 SING N N 56 
6Y2 O4  H17 SING N N 57 
6Y2 C5  H18 SING N N 58 
6Y2 C6  H19 SING N N 59 
6Y2 C6  H20 SING N N 60 
6Y2 O6  H21 SING N N 61 
6Y2 C1  H22 SING N N 62 
6Y2 CBE H23 SING N N 63 
6Y2 CBE H24 SING N N 64 
6Y2 OBF H25 SING N N 65 
6Y2 CAS H26 SING N N 66 
6Y2 OAT H27 SING N N 67 
6Y2 NAP H28 SING N N 68 
6Y2 CBL H29 SING N N 69 
6Y2 CBL H30 SING N N 70 
6Y2 CBL H31 SING N N 71 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
6Y2 InChI            InChI                1.03  
"InChI=1S/C22H31N3O13/c1-9(28)23-15-18(31)17(30)13(7-26)36-22(15)38-20-14(8-27)37-21(16(19(20)32)24-10(2)29)35-12-5-3-11(4-6-12)25(33)34/h3-6,13-22,26-27,30-32H,7-8H2,1-2H3,(H,23,28)(H,24,29)/t13-,14-,15-,16-,17+,18-,19-,20-,21-,22+/m1/s1" 
6Y2 InChIKey         InChI                1.03  HWBFEVWOQMUQIE-BFKOZBEUSA-N 
6Y2 SMILES_CANONICAL CACTVS               3.385 "CC(=O)N[C@@H]1[C@@H](O)[C@@H](O)[C@@H](CO)O[C@H]1O[C@H]2[C@H](O)[C@@H](NC(C)=O)[C@@H](O[C@@H]2CO)Oc3ccc(cc3)[N+]([O-])=O" 
6Y2 SMILES           CACTVS               3.385 "CC(=O)N[CH]1[CH](O)[CH](O)[CH](CO)O[CH]1O[CH]2[CH](O)[CH](NC(C)=O)[CH](O[CH]2CO)Oc3ccc(cc3)[N+]([O-])=O" 
6Y2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "CC(=O)N[C@@H]1[C@H]([C@H]([C@H](O[C@H]1O[C@@H]2[C@H](O[C@H]([C@@H]([C@H]2O)NC(=O)C)Oc3ccc(cc3)[N+](=O)[O-])CO)CO)O)O" 
6Y2 SMILES           "OpenEye OEToolkits" 2.0.5 "CC(=O)NC1C(C(C(OC1OC2C(OC(C(C2O)NC(=O)C)Oc3ccc(cc3)[N+](=O)[O-])CO)CO)O)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
6Y2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.5 "~{N}-[(2~{S},3~{R},4~{R},5~{R},6~{R})-2-[(2~{R},3~{S},4~{R},5~{R},6~{S})-5-acetamido-2-(hydroxymethyl)-6-(4-nitrophenoxy)-4-oxidanyl-oxan-3-yl]oxy-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-3-yl]ethanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
6Y2 "Create component" 2016-07-21 RCSB 
6Y2 "Initial release"  2016-09-14 RCSB 
# 
