data_6T2
#

_chem_comp.id                                   6T2
_chem_comp.name                                 "1-(2-{5-[(3-Methyloxetan-3-yl)methoxy]-1H-benzimidazol-1-yl}quinolin-8-yl)piperidin-4-amine"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C26 H29 N5 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        Crenolanib
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2016-06-17
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       443.541
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    6T2
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5LBY
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
6T2  C1   C1   C  0  1  Y  N  N   0.100  -11.315  15.902   0.873  -4.155   0.021  C1   6T2   1  
6T2  C2   C2   C  0  1  Y  N  N  -0.096   -8.891  16.218   2.379  -2.207   0.041  C2   6T2   2  
6T2  C3   C3   C  0  1  Y  N  N  -1.173   -9.027  17.119   3.527  -3.010   0.074  C3   6T2   3  
6T2  C4   C4   C  0  1  Y  N  N  -1.733   -7.889  17.626   4.760  -2.431   0.093  C4   6T2   4  
6T2  C5   C5   C  0  1  N  N  N   6.308  -10.487  13.083  -4.426   0.220  -0.131  C5   6T2   5  
6T2  C6   C6   C  0  1  Y  N  N  -1.175   -6.640  17.333   4.837  -1.023   0.078  C6   6T2   6  
6T2  C7   C7   C  0  1  Y  N  N  -0.068   -6.568  16.473   3.639  -0.269   0.045  C7   6T2   7  
6T2  C9   C8   C  0  1  Y  N  N   1.741  -10.116  15.064  -0.101  -2.169  -0.016  C9   6T2   8  
6T2  C10  C9   C  0  1  Y  N  N   2.016  -11.460  14.915  -1.073  -3.184  -0.036  C10  6T2   9  
6T2  C11  C10  C  0  1  Y  N  N   0.504   -5.285  16.199   3.716   1.140   0.030  C11  6T2  10  
6T2  C12  C11  C  0  1  Y  N  N   3.194  -11.912  14.332  -2.426  -2.841  -0.071  C12  6T2  11  
6T2  C13  C12  C  0  1  Y  N  N   4.105  -10.931  13.915  -2.795  -1.510  -0.086  C13  6T2  12  
6T2  C14  C13  C  0  1  Y  N  N  -0.074   -4.180  16.735   4.951   1.753   0.048  C14  6T2  13  
6T2  C15  C14  C  0  1  Y  N  N  -1.169   -4.228  17.602   6.120   0.999   0.080  C15  6T2  14  
6T2  C30  C15  C  0  1  N  N  N   1.886   -3.968  14.713   2.464   2.783   1.173  C30  6T2  15  
6T2  C40  C16  C  0  1  N  N  N   2.952   -4.037  13.691   1.112   3.499   1.178  C40  6T2  16  
6T2  C50  C17  C  0  1  N  N  N   4.267   -4.523  14.318   0.971   4.322  -0.106  C50  6T2  17  
6T2  N80  N1   N  0  1  N  N  N   5.324   -4.665  13.304  -0.350   4.965  -0.134  N80  6T2  18  
6T2  C60  C18  C  0  1  N  N  N   4.005   -5.879  15.012   1.113   3.394  -1.316  C60  6T2  19  
6T2  C70  C19  C  0  1  N  N  N   2.863   -5.813  16.016   2.466   2.681  -1.248  C70  6T2  20  
6T2  N4   N2   N  0  1  N  N  N   1.621   -5.284  15.350   2.552   1.907  -0.003  N4   6T2  21  
6T2  N3   N3   N  0  1  Y  N  N   0.450   -7.719  15.943   2.458  -0.894   0.028  N3   6T2  22  
6T2  C16  C20  C  0  1  Y  N  N  -1.723   -5.451  17.876   6.076  -0.362   0.095  C16  6T2  23  
6T2  N1   N4   N  0  1  Y  N  N   0.524  -10.027  15.703   1.124  -2.815   0.017  N1   6T2  24  
6T2  N2   N5   N  0  1  Y  N  N   0.969  -12.205  15.416  -0.409  -4.370  -0.014  N2   6T2  25  
6T2  C19  C21  C  0  1  Y  N  N   2.609   -9.166  14.593  -0.488  -0.837  -0.035  C19  6T2  26  
6T2  C18  C22  C  0  1  Y  N  N   3.789   -9.597  14.026  -1.827  -0.511  -0.067  C18  6T2  27  
6T2  O1   O1   O  0  1  N  N  N   5.283  -11.450  13.399  -4.112  -1.174  -0.119  O1   6T2  28  
6T2  C23  C23  C  0  1  N  N  N   7.556  -11.318  12.782  -5.945   0.400  -0.167  C23  6T2  29  
6T2  C27  C24  C  0  1  N  N  N   8.192  -11.940  14.019  -6.619  -0.426  -1.265  C27  6T2  30  
6T2  C24  C25  C  0  1  N  N  N   8.644  -10.487  12.079  -6.398   1.872  -0.130  C24  6T2  31  
6T2  O2   O2   O  0  1  N  N  N   8.431  -11.644  10.963  -7.393   1.424   0.812  O2   6T2  32  
6T2  C26  C26  C  0  1  N  N  N   7.480  -12.287  11.686  -6.620   0.271   1.211  C26  6T2  33  
6T2  H1   H1   H  0  1  N  N  N  -0.825  -11.578  16.393   1.629  -4.926   0.044  H1   6T2  34  
6T2  H2   H2   H  0  1  N  N  N  -1.544  -10.002  17.400   3.434  -4.086   0.085  H2   6T2  35  
6T2  H3   H3   H  0  1  N  N  N  -2.609   -7.954  18.255   5.656  -3.034   0.118  H3   6T2  36  
6T2  H4   H4   H  0  1  N  N  N   6.486   -9.818  13.938  -4.026   0.690   0.767  H4   6T2  37  
6T2  H5   H5   H  0  1  N  N  N   6.020   -9.891  12.205  -3.984   0.684  -1.012  H5   6T2  38  
6T2  H6   H6   H  0  1  N  N  N   3.397  -12.965  14.207  -3.181  -3.613  -0.086  H6   6T2  39  
6T2  H7   H7   H  0  1  N  N  N   0.334   -3.213  16.478   5.011   2.831   0.037  H7   6T2  40  
6T2  H8   H8   H  0  1  N  N  N  -1.567   -3.327  18.044   7.076   1.501   0.094  H8   6T2  41  
6T2  H9   H9   H  0  1  N  N  N   2.190   -3.254  15.492   3.266   3.521   1.136  H9   6T2  42  
6T2  H10  H10  H  0  1  N  N  N   0.961   -3.615  14.234   2.562   2.185   2.079  H10  6T2  43  
6T2  H11  H11  H  0  1  N  N  N   3.105   -3.037  13.259   0.310   2.763   1.228  H11  6T2  44  
6T2  H12  H12  H  0  1  N  N  N   2.649   -4.737  12.898   1.054   4.161   2.042  H12  6T2  45  
6T2  H13  H13  H  0  1  N  N  N   4.584   -3.796  15.080   1.749   5.084  -0.138  H13  6T2  46  
6T2  H14  H14  H  0  1  N  N  N   6.166   -4.982  13.741  -0.467   5.514  -0.972  H14  6T2  47  
6T2  H15  H15  H  0  1  N  N  N   5.037   -5.329  12.614  -1.087   4.282  -0.043  H15  6T2  48  
6T2  H17  H17  H  0  1  N  N  N   3.755   -6.625  14.244   0.312   2.655  -1.304  H17  6T2  49  
6T2  H18  H18  H  0  1  N  N  N   4.920   -6.187  15.539   1.056   3.980  -2.233  H18  6T2  50  
6T2  H19  H19  H  0  1  N  N  N   2.664   -6.821  16.408   2.565   2.008  -2.101  H19  6T2  51  
6T2  H20  H20  H  0  1  N  N  N   3.144   -5.146  16.844   3.267   3.419  -1.273  H20  6T2  52  
6T2  H21  H21  H  0  1  N  N  N  -2.591   -5.510  18.516   6.992  -0.933   0.120  H21  6T2  53  
6T2  H22  H22  H  0  1  N  N  N   2.376   -8.114  14.664   0.259  -0.057  -0.022  H22  6T2  54  
6T2  H23  H23  H  0  1  N  N  N   4.489   -8.862  13.656  -2.126   0.527  -0.079  H23  6T2  55  
6T2  H24  H24  H  0  1  N  N  N   8.236  -11.192  14.824  -6.278  -1.459  -1.203  H24  6T2  56  
6T2  H25  H25  H  0  1  N  N  N   7.589  -12.799  14.349  -7.701  -0.392  -1.133  H25  6T2  57  
6T2  H26  H26  H  0  1  N  N  N   9.210  -12.279  13.777  -6.359  -0.015  -2.240  H26  6T2  58  
6T2  H27  H27  H  0  1  N  N  N   9.628  -10.463  12.570  -5.659   2.550   0.298  H27  6T2  59  
6T2  H28  H28  H  0  1  N  N  N   8.358   -9.468  11.781  -6.810   2.231  -1.073  H28  6T2  60  
6T2  H29  H29  H  0  1  N  N  N   6.497  -12.313  11.192  -7.212  -0.636   1.332  H29  6T2  61  
6T2  H30  H30  H  0  1  N  N  N   7.769  -13.306  11.982  -5.949   0.460   2.049  H30  6T2  62  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
6T2  O2   C26  SING  N  N   1  
6T2  O2   C24  SING  N  N   2  
6T2  C26  C23  SING  N  N   3  
6T2  C24  C23  SING  N  N   4  
6T2  C23  C5   SING  N  N   5  
6T2  C23  C27  SING  N  N   6  
6T2  C5   O1   SING  N  N   7  
6T2  N80  C50  SING  N  N   8  
6T2  O1   C13  SING  N  N   9  
6T2  C40  C50  SING  N  N  10  
6T2  C40  C30  SING  N  N  11  
6T2  C13  C18  DOUB  Y  N  12  
6T2  C13  C12  SING  Y  N  13  
6T2  C18  C19  SING  Y  N  14  
6T2  C50  C60  SING  N  N  15  
6T2  C12  C10  DOUB  Y  N  16  
6T2  C19  C9   DOUB  Y  N  17  
6T2  C30  N4   SING  N  N  18  
6T2  C10  C9   SING  Y  N  19  
6T2  C10  N2   SING  Y  N  20  
6T2  C60  C70  SING  N  N  21  
6T2  C9   N1   SING  Y  N  22  
6T2  N4   C70  SING  N  N  23  
6T2  N4   C11  SING  N  N  24  
6T2  N2   C1   DOUB  Y  N  25  
6T2  N1   C1   SING  Y  N  26  
6T2  N1   C2   SING  N  N  27  
6T2  N3   C2   DOUB  Y  N  28  
6T2  N3   C7   SING  Y  N  29  
6T2  C11  C7   DOUB  Y  N  30  
6T2  C11  C14  SING  Y  N  31  
6T2  C2   C3   SING  Y  N  32  
6T2  C7   C6   SING  Y  N  33  
6T2  C14  C15  DOUB  Y  N  34  
6T2  C3   C4   DOUB  Y  N  35  
6T2  C6   C4   SING  Y  N  36  
6T2  C6   C16  DOUB  Y  N  37  
6T2  C15  C16  SING  Y  N  38  
6T2  C1   H1   SING  N  N  39  
6T2  C3   H2   SING  N  N  40  
6T2  C4   H3   SING  N  N  41  
6T2  C5   H4   SING  N  N  42  
6T2  C5   H5   SING  N  N  43  
6T2  C12  H6   SING  N  N  44  
6T2  C14  H7   SING  N  N  45  
6T2  C15  H8   SING  N  N  46  
6T2  C30  H9   SING  N  N  47  
6T2  C30  H10  SING  N  N  48  
6T2  C40  H11  SING  N  N  49  
6T2  C40  H12  SING  N  N  50  
6T2  C50  H13  SING  N  N  51  
6T2  N80  H14  SING  N  N  52  
6T2  N80  H15  SING  N  N  53  
6T2  C60  H17  SING  N  N  54  
6T2  C60  H18  SING  N  N  55  
6T2  C70  H19  SING  N  N  56  
6T2  C70  H20  SING  N  N  57  
6T2  C16  H21  SING  N  N  58  
6T2  C19  H22  SING  N  N  59  
6T2  C18  H23  SING  N  N  60  
6T2  C27  H24  SING  N  N  61  
6T2  C27  H25  SING  N  N  62  
6T2  C27  H26  SING  N  N  63  
6T2  C24  H27  SING  N  N  64  
6T2  C24  H28  SING  N  N  65  
6T2  C26  H29  SING  N  N  66  
6T2  C26  H30  SING  N  N  67  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
6T2  InChI             InChI                 1.03   "InChI=1S/C26H29N5O2/c1-26(14-32-15-26)16-33-20-6-7-22-21(13-20)28-17-31(22)24-8-5-18-3-2-4-23(25(18)29-24)30-11-9-19(27)10-12-30/h2-8,13,17,19H,9-12,14-16,27H2,1H3"  
6T2  InChIKey          InChI                 1.03   DYNHJHQFHQTFTP-UHFFFAOYSA-N  
6T2  SMILES_CANONICAL  CACTVS                3.385  "CC1(COC1)COc2ccc3n(cnc3c2)c4ccc5cccc(N6CCC(N)CC6)c5n4"  
6T2  SMILES            CACTVS                3.385  "CC1(COC1)COc2ccc3n(cnc3c2)c4ccc5cccc(N6CCC(N)CC6)c5n4"  
6T2  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.5  "CC1(COC1)COc2ccc3c(c2)ncn3c4ccc5cccc(c5n4)N6CCC(CC6)N"  
6T2  SMILES            "OpenEye OEToolkits"  2.0.5  "CC1(COC1)COc2ccc3c(c2)ncn3c4ccc5cccc(c5n4)N6CCC(CC6)N"  
#
_pdbx_chem_comp_identifier.comp_id          6T2
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.5
_pdbx_chem_comp_identifier.identifier       "1-[2-[5-[(3-methyloxetan-3-yl)methoxy]benzimidazol-1-yl]quinolin-8-yl]piperidin-4-amine"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
6T2  "Create component"  2016-06-17  EBI   
6T2  "Modify synonyms"   2016-07-15  EBI   
6T2  "Initial release"   2017-11-29  RCSB  
6T2  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     6T2
_pdbx_chem_comp_synonyms.name        Crenolanib
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
