data_5A2
#

_chem_comp.id                                   5A2
_chem_comp.name                                 "3,5-di-methylenebisphosphonate inositol tetrakisphosphate"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C8 H24 O28 P8"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "{[(1R,3S,4R,5S,6R)-2,4,5,6-tetrakis(phosphonooxy)cyclohexane-1,3-diyl]bis[oxy(hydroxyphosphoryl)methanediyl]}bis(phosphonic acid)"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2015-08-28
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       816.049
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    5A2
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5DGI
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5A2  C1   C1   C  0  1  N  N  N   1.428  20.265  10.250  -0.098   2.144   0.602  C1   5A2   1  
5A2  C2   C2   C  0  1  N  N  R  -0.026  20.038   9.808   1.230   1.627   0.044  C2   5A2   2  
5A2  C3   C3   C  0  1  N  N  R  -0.917  19.730  11.032   1.354   0.129   0.332  C3   5A2   3  
5A2  C4   C4   C  0  1  N  N  N  -0.864  20.900  12.034   0.196  -0.616  -0.334  C4   5A2   4  
5A2  C5   C5   C  0  1  N  N  S   0.569  21.123  12.502  -1.131  -0.099   0.224  C5   5A2   5  
5A2  C6   C6   C  0  1  N  N  R   1.522  21.366  11.324  -1.256   1.399  -0.064  C6   5A2   6  
5A2  O55  O1   O  0  1  N  N  N  -2.084  23.973  16.602  -6.933  -3.797  -0.768  O55  5A2   7  
5A2  PB5  P1   P  0  1  N  N  N  -0.771  24.073  15.927  -5.786  -3.268   0.231  PB5  5A2   8  
5A2  O65  O2   O  0  1  N  N  N  -0.986  24.477  14.522  -6.400  -2.434   1.289  O65  5A2   9  
5A2  O75  O3   O  0  1  N  N  N   0.140  24.862  16.786  -5.040  -4.526   0.904  O75  5A2  10  
5A2  C5B  C7   C  0  1  N  N  N  -0.193  22.347  15.939  -4.579  -2.273  -0.704  C5B  5A2  11  
5A2  PA5  P2   P  0  1  N  N  N   1.257  22.163  14.872  -3.280  -1.674   0.427  PA5  5A2  12  
5A2  O35  O4   O  0  1  N  N  N   1.816  20.805  15.065  -2.533  -2.931   1.100  O35  5A2  13  
5A2  O25  O5   O  0  1  N  N  N   2.127  23.349  15.052  -3.893  -0.840   1.485  O25  5A2  14  
5A2  O15  O6   O  0  1  N  N  N   0.609  22.258  13.387  -2.213  -0.795  -0.398  O15  5A2  15  
5A2  O14  O7   O  0  1  N  N  N  -1.663  20.598  13.185   0.312  -2.015  -0.065  O14  5A2  16  
5A2  PA4  P3   P  0  1  N  N  N  -3.110  21.269  13.485   0.465  -3.121  -1.224  PA4  5A2  17  
5A2  O34  O8   O  0  1  N  N  N  -3.355  22.338  12.308  -0.655  -2.988  -2.183  O34  5A2  18  
5A2  O44  O9   O  0  1  N  N  N  -3.017  22.004  14.760   1.861  -2.902  -1.995  O44  5A2  19  
5A2  O24  O10  O  0  1  N  N  N  -4.113  20.192  13.364   0.438  -4.592  -0.570  O24  5A2  20  
5A2  O16  O11  O  0  1  N  N  N   2.853  21.402  11.846  -2.496   1.882   0.456  O16  5A2  21  
5A2  PA6  P4   P  0  1  N  N  N   3.816  22.667  11.654  -3.629   2.560  -0.465  PA6  5A2  22  
5A2  O36  O12  O  0  1  N  N  N   4.562  22.347  10.425  -3.987   1.637  -1.565  O36  5A2  23  
5A2  O46  O13  O  0  1  N  N  N   2.934  23.846  11.585  -4.935   2.864   0.427  O46  5A2  24  
5A2  O26  O14  O  0  1  N  N  N   4.615  22.567  12.898  -3.068   3.937  -1.081  O26  5A2  25  
5A2  O11  O15  O  0  1  N  N  N   2.219  20.656   9.096  -0.214   3.543   0.333  O11  5A2  26  
5A2  PA1  P5   P  0  1  N  N  N   3.465  19.789   8.537  -0.366   4.649   1.492  PA1  5A2  27  
5A2  O41  O16  O  0  1  N  N  N   2.956  18.411   8.436  -1.763   4.430   2.263  O41  5A2  28  
5A2  O21  O17  O  0  1  N  N  N   3.804  20.453   7.262   0.753   4.516   2.451  O21  5A2  29  
5A2  O31  O18  O  0  1  N  N  N   4.495  19.965   9.593  -0.340   6.120   0.838  O31  5A2  30  
5A2  O12  O19  O  0  1  N  N  N  -0.510  21.219   9.128   1.271   1.845  -1.367  O12  5A2  31  
5A2  PA2  P6   P  0  1  N  N  N  -1.065  21.249   7.630   2.395   2.750  -2.082  PA2  5A2  32  
5A2  O42  O20  O  0  1  N  N  N  -2.496  20.970   7.788   3.837   2.060  -1.898  O42  5A2  33  
5A2  O22  O21  O  0  1  N  N  N  -0.686  22.600   7.207   2.059   2.883  -3.651  O22  5A2  34  
5A2  O32  O22  O  0  1  N  N  N  -0.326  20.171   6.937   2.410   4.096  -1.465  O32  5A2  35  
5A2  O13  O23  O  0  1  N  N  N  -2.278  19.510  10.605   2.594  -0.354  -0.189  O13  5A2  36  
5A2  PA3  P7   P  0  1  N  N  N  -2.802  18.064  10.050   3.727  -1.032   0.733  PA3  5A2  37  
5A2  O23  O24  O  0  1  N  N  N  -1.710  16.941  10.492   3.166  -2.409   1.349  O23  5A2  38  
5A2  O33  O25  O  0  1  N  N  N  -2.975  18.080   8.581   4.085  -0.109   1.833  O33  5A2  39  
5A2  C3B  C8   C  0  1  N  N  N  -4.321  17.734  10.980   5.206  -1.376  -0.277  C3B  5A2  40  
5A2  PB3  P8   P  0  1  N  N  N  -5.644  18.783  10.438   6.489  -2.143   0.766  PB3  5A2  41  
5A2  O53  O26  O  0  1  N  N  N  -5.359  19.061   9.023   5.973  -3.409   1.333  O53  5A2  42  
5A2  O63  O27  O  0  1  N  N  N  -6.837  17.971  10.714   7.794  -2.447  -0.125  O63  5A2  43  
5A2  O73  O28  O  0  1  N  N  N  -5.485  19.960  11.314   6.878  -1.139   1.963  O73  5A2  44  
5A2  H1   H1   H  0  1  N  N  N   1.820  19.327  10.671  -0.130   1.978   1.678  H1   5A2  45  
5A2  H2   H2   H  0  1  N  N  N  -0.056  19.175   9.127   2.055   2.158   0.518  H2   5A2  46  
5A2  H3   H3   H  0  1  N  N  N  -0.530  18.827  11.527   1.323  -0.038   1.409  H3   5A2  47  
5A2  H4   H4   H  0  1  N  N  N  -1.230  21.812  11.540   0.228  -0.450  -1.410  H4   5A2  48  
5A2  H5   H5   H  0  1  N  N  N   0.905  20.224  13.039  -1.163  -0.266   1.301  H5   5A2  49  
5A2  H6   H6   H  0  1  N  N  N   1.271  22.331  10.860  -1.224   1.566  -1.141  H6   5A2  50  
5A2  H7   H7   H  0  1  N  N  N  -2.774  24.190  15.986  -7.612  -4.335  -0.338  H7   5A2  51  
5A2  H8   H8   H  0  1  N  N  N   0.500  25.585  16.286  -4.614  -5.117   0.268  H8   5A2  52  
5A2  H9   H9   H  0  1  N  N  N  -0.998  21.692  15.574  -4.127  -2.887  -1.483  H9   5A2  53  
5A2  H10  H10  H  0  1  N  N  N   0.074  22.061  16.967  -5.084  -1.422  -1.159  H10  5A2  54  
5A2  H11  H11  H  0  1  N  N  N   2.735  20.870  15.298  -2.107  -3.523   0.465  H11  5A2  55  
5A2  H12  H12  H  0  1  N  N  N  -3.122  22.934  14.598   2.640  -2.976  -1.427  H12  5A2  56  
5A2  H13  H13  H  0  1  N  N  N  -4.679  20.368  12.621   0.525  -5.310  -1.212  H13  5A2  57  
5A2  H14  H14  H  0  1  N  N  N   2.988  24.232  10.719  -5.660   3.273  -0.064  H14  5A2  58  
5A2  H15  H15  H  0  1  N  N  N   5.503  22.305  12.684  -2.813   4.591  -0.415  H15  5A2  59  
5A2  H16  H16  H  0  1  N  N  N   2.923  18.151   7.523  -2.541   4.504   1.695  H16  5A2  60  
5A2  H17  H17  H  0  1  N  N  N   5.211  20.489   9.253  -0.427   6.838   1.480  H17  5A2  61  
5A2  H18  H18  H  0  1  N  N  N  -2.698  20.124   7.407   3.900   1.173  -2.279  H18  5A2  62  
5A2  H19  H19  H  0  1  N  N  N  -0.011  22.546   6.541   2.697   3.416  -4.146  H19  5A2  63  
5A2  H20  H20  H  0  1  N  N  N  -1.381  16.497   9.719   2.911  -3.063   0.683  H20  5A2  64  
5A2  H21  H21  H  0  1  N  N  N  -4.612  16.684  10.831   4.942  -2.056  -1.087  H21  5A2  65  
5A2  H22  H22  H  0  1  N  N  N  -4.134  17.915  12.049   5.586  -0.444  -0.694  H22  5A2  66  
5A2  H23  H23  H  0  1  N  N  N  -7.260  17.740   9.895   8.520  -2.857   0.366  H23  5A2  67  
5A2  H24  H24  H  0  1  N  N  N  -5.219  20.709  10.794   7.225  -0.287   1.665  H24  5A2  68  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5A2  O32  PA2  DOUB  N  N   1  
5A2  O22  PA2  SING  N  N   2  
5A2  O21  PA1  DOUB  N  N   3  
5A2  PA2  O42  SING  N  N   4  
5A2  PA2  O12  SING  N  N   5  
5A2  O41  PA1  SING  N  N   6  
5A2  PA1  O11  SING  N  N   7  
5A2  PA1  O31  SING  N  N   8  
5A2  O33  PA3  DOUB  N  N   9  
5A2  O53  PB3  DOUB  N  N  10  
5A2  O11  C1   SING  N  N  11  
5A2  O12  C2   SING  N  N  12  
5A2  C2   C1   SING  N  N  13  
5A2  C2   C3   SING  N  N  14  
5A2  PA3  O23  SING  N  N  15  
5A2  PA3  O13  SING  N  N  16  
5A2  PA3  C3B  SING  N  N  17  
5A2  C1   C6   SING  N  N  18  
5A2  O36  PA6  DOUB  N  N  19  
5A2  PB3  O63  SING  N  N  20  
5A2  PB3  C3B  SING  N  N  21  
5A2  PB3  O73  SING  N  N  22  
5A2  O13  C3   SING  N  N  23  
5A2  C3   C4   SING  N  N  24  
5A2  C6   O16  SING  N  N  25  
5A2  C6   C5   SING  N  N  26  
5A2  O46  PA6  SING  N  N  27  
5A2  PA6  O16  SING  N  N  28  
5A2  PA6  O26  SING  N  N  29  
5A2  C4   C5   SING  N  N  30  
5A2  C4   O14  SING  N  N  31  
5A2  O34  PA4  DOUB  N  N  32  
5A2  C5   O15  SING  N  N  33  
5A2  O14  PA4  SING  N  N  34  
5A2  O24  PA4  SING  N  N  35  
5A2  O15  PA5  SING  N  N  36  
5A2  PA4  O44  SING  N  N  37  
5A2  O65  PB5  DOUB  N  N  38  
5A2  PA5  O25  DOUB  N  N  39  
5A2  PA5  O35  SING  N  N  40  
5A2  PA5  C5B  SING  N  N  41  
5A2  PB5  C5B  SING  N  N  42  
5A2  PB5  O55  SING  N  N  43  
5A2  PB5  O75  SING  N  N  44  
5A2  C1   H1   SING  N  N  45  
5A2  C2   H2   SING  N  N  46  
5A2  C3   H3   SING  N  N  47  
5A2  C4   H4   SING  N  N  48  
5A2  C5   H5   SING  N  N  49  
5A2  C6   H6   SING  N  N  50  
5A2  O55  H7   SING  N  N  51  
5A2  O75  H8   SING  N  N  52  
5A2  C5B  H9   SING  N  N  53  
5A2  C5B  H10  SING  N  N  54  
5A2  O35  H11  SING  N  N  55  
5A2  O44  H12  SING  N  N  56  
5A2  O24  H13  SING  N  N  57  
5A2  O46  H14  SING  N  N  58  
5A2  O26  H15  SING  N  N  59  
5A2  O41  H16  SING  N  N  60  
5A2  O31  H17  SING  N  N  61  
5A2  O42  H18  SING  N  N  62  
5A2  O22  H19  SING  N  N  63  
5A2  O23  H20  SING  N  N  64  
5A2  C3B  H21  SING  N  N  65  
5A2  C3B  H22  SING  N  N  66  
5A2  O63  H23  SING  N  N  67  
5A2  O73  H24  SING  N  N  68  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5A2  SMILES            ACDLabs               12.01  "C1(C(C(C(C(C1OP(O)(O)=O)OP(O)(CP(O)(O)=O)=O)OP(O)(=O)O)OP(CP(O)(O)=O)(=O)O)OP(O)(=O)O)OP(O)(O)=O"  
5A2  InChI             InChI                 1.03   "InChI=1S/C8H24O28P8/c9-37(10,11)1-39(15,16)31-3-5(33-41(19,20)21)4(32-40(17,18)2-38(12,13)14)7(35-43(25,26)27)8(36-44(28,29)30)6(3)34-42(22,23)24/h3-8H,1-2H2,(H,15,16)(H,17,18)(H2,9,10,11)(H2,12,13,14)(H2,19,20,21)(H2,22,23,24)(H2,25,26,27)(H2,28,29,30)/t3-,4+,5-,6-,7-,8-/m1/s1"  
5A2  InChIKey          InChI                 1.03   WDYISGXURTYYJP-XAZAIFFQSA-N  
5A2  SMILES_CANONICAL  CACTVS                3.385  "O[P](O)(=O)C[P](O)(=O)O[C@@H]1[C@@H](O[P](O)(O)=O)[C@H](O[P](O)(O)=O)[C@H](O[P](O)(O)=O)[C@H](O[P](O)(=O)C[P](O)(O)=O)[C@H]1O[P](O)(O)=O"  
5A2  SMILES            CACTVS                3.385  "O[P](O)(=O)C[P](O)(=O)O[CH]1[CH](O[P](O)(O)=O)[CH](O[P](O)(O)=O)[CH](O[P](O)(O)=O)[CH](O[P](O)(=O)C[P](O)(O)=O)[CH]1O[P](O)(O)=O"  
5A2  SMILES_CANONICAL  "OpenEye OEToolkits"  1.9.2  "C(P(=O)(O)O)P(=O)(O)O[C@@H]1[C@H](C([C@@H]([C@@H](C1OP(=O)(O)O)OP(=O)(CP(=O)(O)O)O)OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O"  
5A2  SMILES            "OpenEye OEToolkits"  1.9.2  "C(P(=O)(O)O)P(=O)(O)OC1C(C(C(C(C1OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O)OP(=O)(CP(=O)(O)O)O)OP(=O)(O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
5A2  "SYSTEMATIC NAME"  ACDLabs               12.01  "{[(1R,3S,4R,5S,6R)-2,4,5,6-tetrakis(phosphonooxy)cyclohexane-1,3-diyl]bis[oxy(hydroxyphosphoryl)methanediyl]}bis(phosphonic acid)"  
5A2  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.9.2  "[oxidanyl-[(1S,3R,4R,6R)-3-[oxidanyl(phosphonomethyl)phosphoryl]oxy-2,4,5,6-tetraphosphonooxy-cyclohexyl]oxy-phosphoryl]methylphosphonic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5A2  "Create component"  2015-08-28  RCSB  
5A2  "Modify synonyms"   2015-08-31  RCSB  
5A2  "Initial release"   2016-08-10  RCSB  
5A2  "Modify synonyms"   2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     5A2
_pdbx_chem_comp_synonyms.name        "{[(1R,3S,4R,5S,6R)-2,4,5,6-tetrakis(phosphonooxy)cyclohexane-1,3-diyl]bis[oxy(hydroxyphosphoryl)methanediyl]}bis(phosphonic acid)"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
