data_4J2
# 
_chem_comp.id                                    4J2 
_chem_comp.name                                  "(2R)-2-amino-3-(naphthalen-2-yl)propanoic acid" 
_chem_comp.type                                  "D-PEPTIDE LINKING" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C13 H13 N O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-09-17 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        215.248 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     4J2 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2N7O 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
4J2 N    N    N 0 1 N N N Y Y N -2.152 3.603 -0.576 -2.014 1.375  0.924  N   4J2 1  
4J2 CA   CA   C 0 1 N N R Y N N -2.977 2.529 0.037  -2.452 0.060  0.436  CA  4J2 2  
4J2 CB   CB   C 0 1 N N N N N N -2.307 1.991 1.339  -1.679 -0.295 -0.835 CB  4J2 3  
4J2 CG   CG   C 0 1 Y N N N N N -1.762 2.988 2.369  -0.217 -0.458 -0.506 CG  4J2 4  
4J2 CD1  CD1  C 0 1 Y N N N N N -0.395 3.058 2.615  0.268  -1.711 -0.137 CD1 4J2 5  
4J2 CD2  CD2  C 0 1 Y N N N N N -2.629 3.838 3.038  0.611  0.620  -0.579 CD2 4J2 6  
4J2 CE1  CE1  C 0 1 Y N N N N N 0.130  3.989 3.497  1.582  -1.892 0.167  CE1 4J2 7  
4J2 CZ1  CZ1  C 0 1 Y N N N N N -0.720 4.872 4.158  2.466  -0.801 0.109  CZ1 4J2 8  
4J2 CZ2  CZ2  C 0 1 Y N N N N N -0.216 5.828 5.034  3.829  -0.950 0.416  CZ2 4J2 9  
4J2 CZ3  CZ3  C 0 1 Y N N N N N -1.083 6.698 5.692  4.656  0.129  0.348  CZ3 4J2 10 
4J2 CE2  CE2  C 0 1 Y N N N N N -2.139 4.793 3.931  1.974  0.472  -0.272 CE2 4J2 11 
4J2 CE3  CE3  C 0 1 Y N N N N N -2.987 5.673 4.605  2.859  1.562  -0.336 CE3 4J2 12 
4J2 CE4  CE4  C 0 1 Y N N N N N -2.457 6.619 5.480  4.171  1.383  -0.021 CE4 4J2 13 
4J2 HE1  HE1  H 0 1 N N N N N N 1.195  4.030 3.671  1.943  -2.869 0.452  1HE 4J2 14 
4J2 HE3  HE3  H 0 1 N N N N N N -4.054 5.621 4.448  2.498  2.538  -0.624 3HE 4J2 15 
4J2 HE4  HE4  H 0 1 N N N N N N -3.118 7.297 5.999  4.848  2.223  -0.067 4HE 4J2 16 
4J2 C    C    C 0 1 N N N Y N Y -3.249 1.363 -0.966 -3.927 0.102  0.132  C   4J2 17 
4J2 O    O    O 0 1 N N N Y N Y -4.402 1.043 -1.261 -4.476 1.163  -0.049 O   4J2 18 
4J2 H    H    H 0 1 N N N Y Y N -2.598 3.933 -1.408 -1.043 1.355  1.196  H   4J2 19 
4J2 H2   H1   H 0 1 N Y N Y Y N -2.054 4.358 0.072  -2.182 2.091  0.234  H1  4J2 20 
4J2 HA   HA   H 0 1 N N N Y N N -3.951 2.957 0.318  -2.260 -0.693 1.200  HA  4J2 21 
4J2 HB2  HB2  H 0 1 N N N N N N -3.058 1.374 1.855  -2.065 -1.228 -1.247 2HB 4J2 22 
4J2 HB1  HB1  H 0 1 N N N N N N -1.463 1.358 1.028  -1.799 0.503  -1.568 1HB 4J2 23 
4J2 HD1  HD1  H 0 1 N N N N N N 0.270  2.374 2.109  -0.410 -2.551 -0.091 1HD 4J2 24 
4J2 HD2  HD2  H 0 1 N N N N N N -3.693 3.761 2.867  0.222  1.585  -0.871 2HD 4J2 25 
4J2 HZ2  HZ2  H 0 1 N N N N N N 0.848  5.896 5.204  4.219  -1.915 0.704  2HZ 4J2 26 
4J2 HZ23 HZ23 H 0 0 N N N N N N -0.687 7.439 6.371  5.703  0.013  0.585  3HZ 4J2 27 
4J2 OXT  OXT  O 0 1 N Y N Y N Y -2.455 0.855 -1.386 -4.631 -1.038 0.063  OXT 4J2 28 
4J2 HXT  HXT  H 0 1 N Y N Y N Y -2.783 0.180 -1.969 -5.574 -0.961 -0.135 HXT 4J2 29 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
4J2 N   CA   SING N N 1  
4J2 CA  CB   SING N N 2  
4J2 CA  C    SING N N 3  
4J2 CB  CG   SING N N 4  
4J2 CG  CD1  DOUB Y N 5  
4J2 CG  CD2  SING Y N 6  
4J2 CD1 CE1  SING Y N 7  
4J2 CD2 CE2  DOUB Y N 8  
4J2 CE1 CZ1  DOUB Y N 9  
4J2 CE1 HE1  SING N N 10 
4J2 CZ1 CZ2  SING Y N 11 
4J2 CZ1 CE2  SING Y N 12 
4J2 CZ2 CZ3  DOUB Y N 13 
4J2 CZ3 CE4  SING Y N 14 
4J2 CE2 CE3  SING Y N 15 
4J2 CE3 CE4  DOUB Y N 16 
4J2 CE3 HE3  SING N N 17 
4J2 CE4 HE4  SING N N 18 
4J2 C   O    DOUB N N 19 
4J2 N   H    SING N N 20 
4J2 N   H2   SING N N 21 
4J2 CA  HA   SING N N 22 
4J2 CB  HB2  SING N N 23 
4J2 CB  HB1  SING N N 24 
4J2 CD1 HD1  SING N N 25 
4J2 CD2 HD2  SING N N 26 
4J2 CZ2 HZ2  SING N N 27 
4J2 CZ3 HZ23 SING N N 28 
4J2 C   OXT  SING N N 29 
4J2 OXT HXT  SING N N 30 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
4J2 SMILES           ACDLabs              12.01 "NC(Cc1ccc2ccccc2c1)C(=O)O"                                                                            
4J2 InChI            InChI                1.03  "InChI=1S/C13H13NO2/c14-12(13(15)16)8-9-5-6-10-3-1-2-4-11(10)7-9/h1-7,12H,8,14H2,(H,15,16)/t12-/m1/s1" 
4J2 InChIKey         InChI                1.03  JPZXHKDZASGCLU-GFCCVEGCSA-N                                                                            
4J2 SMILES_CANONICAL CACTVS               3.385 "N[C@H](Cc1ccc2ccccc2c1)C(O)=O"                                                                        
4J2 SMILES           CACTVS               3.385 "N[CH](Cc1ccc2ccccc2c1)C(O)=O"                                                                         
4J2 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1ccc2cc(ccc2c1)C[C@H](C(=O)O)N"                                                                      
4J2 SMILES           "OpenEye OEToolkits" 1.7.6 "c1ccc2cc(ccc2c1)CC(C(=O)O)N"                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
4J2 "SYSTEMATIC NAME" ACDLabs              12.01 "(2R)-2-amino-3-(naphthalen-2-yl)propanoic acid (non-preferred name)" 
4J2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R)-2-azanyl-3-naphthalen-2-yl-propanoic acid"                      
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
4J2 "Create component" 2015-09-17 RCSB 
4J2 "Initial release"  2015-12-16 RCSB 
4J2 "Modify backbone"  2023-11-03 PDBE 
4J2 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            4J2 
_pdbx_chem_comp_pcm.modified_residue_id                ? 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Non-standard residue" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
