data_3Y2
# 
_chem_comp.id                                    3Y2 
_chem_comp.name                                  "2-amino-4-chloro-N-(1-{[(2E)-2-iminoethyl]carbamoyl}cyclohexyl)benzamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C16 H21 Cl N4 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-12-09 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        336.817 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     3Y2 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4X6J 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
3Y2 C1  C1  C  0 1 N N N N N N 48.758 19.474 10.811 -2.400 3.852  1.150  C1  3Y2 1  
3Y2 C2  C2  C  0 1 N N N N N N 49.291 20.717 11.517 -3.062 2.819  0.275  C2  3Y2 2  
3Y2 C4  C3  C  0 1 N N N N N N 50.111 20.286 13.804 -2.844 0.440  -0.206 C4  3Y2 3  
3Y2 C6  C4  C  0 1 N N N N N N 51.226 20.025 14.778 -2.254 -0.916 0.082  C6  3Y2 4  
3Y2 C7  C5  C  0 1 N N N N N N 51.415 18.497 14.960 -2.981 -1.545 1.272  C7  3Y2 5  
3Y2 C8  C6  C  0 1 N N N N N N 52.653 18.078 15.796 -2.383 -2.923 1.565  C8  3Y2 6  
3Y2 C9  C7  C  0 1 N N N N N N 53.838 18.969 15.445 -2.545 -3.820 0.337  C9  3Y2 7  
3Y2 C10 C8  C  0 1 N N N N N N 53.541 20.483 15.464 -1.818 -3.191 -0.854 C10 3Y2 8  
3Y2 C11 C9  C  0 1 N N N N N N 52.547 20.657 14.354 -2.416 -1.814 -1.146 C11 3Y2 9  
3Y2 C13 C10 C  0 1 N N N N N N 50.507 21.912 16.164 -0.001 -0.179 -0.481 C13 3Y2 10 
3Y2 N3  N1  N  0 1 N N N N N N 50.376 20.558 12.484 -2.415 1.520  0.477  N3  3Y2 11 
3Y2 N1  N2  N  0 1 N N N N N N 48.032 19.691 9.779  -1.933 4.925  0.632  N1  3Y2 12 
3Y2 O5  O1  O  0 1 N N N N N N 48.952 20.248 14.177 -3.704 0.561  -1.053 O5  3Y2 13 
3Y2 N12 N3  N  0 1 N N N N N N 50.803 20.592 16.030 -0.831 -0.773 0.399  N12 3Y2 14 
3Y2 O14 O2  O  0 1 N N N N N N 50.613 22.760 15.236 -0.448 0.320  -1.496 O14 3Y2 15 
3Y2 C15 C11 C  0 1 Y N N N N N 49.790 22.280 17.400 1.447  -0.135 -0.214 C15 3Y2 16 
3Y2 C16 C12 C  0 1 Y N N N N N 48.887 23.331 17.478 2.327  0.387  -1.175 C16 3Y2 17 
3Y2 C17 C13 C  0 1 Y N N N N N 48.128 23.550 18.623 3.690  0.423  -0.911 C17 3Y2 18 
3Y2 C18 C14 C  0 1 Y N N N N N 48.263 22.685 19.676 4.175  -0.053 0.291  C18 3Y2 19 
3Y2 C19 C15 C  0 1 Y N N N N N 49.151 21.644 19.622 3.307  -0.569 1.243  C19 3Y2 20 
3Y2 C20 C16 C  0 1 Y N N N N N 49.879 21.427 18.464 1.953  -0.608 1.001  C20 3Y2 21 
3Y2 N21 N4  N  0 1 N N N N N N 48.687 24.294 16.427 1.837  0.864  -2.384 N21 3Y2 22 
3Y2 CL2 CL1 CL 0 0 N N N N N N 47.301 22.874 21.171 5.880  -0.005 0.613  CL2 3Y2 23 
3Y2 H1  H1  H  0 1 N N N N N N 48.979 18.476 11.159 -2.323 3.688  2.215  H1  3Y2 24 
3Y2 H2  H2  H  0 1 N N N N N N 49.649 21.405 10.737 -4.117 2.744  0.537  H2  3Y2 25 
3Y2 H3  H3  H  0 1 N N N N N N 48.445 21.176 12.050 -2.967 3.114  -0.770 H3  3Y2 26 
3Y2 H4  H4  H  0 1 N N N N N N 50.518 18.100 15.458 -2.866 -0.906 2.148  H4  3Y2 27 
3Y2 H5  H5  H  0 1 N N N N N N 51.510 18.045 13.962 -4.040 -1.652 1.037  H5  3Y2 28 
3Y2 H6  H6  H  0 1 N N N N N N 52.423 18.181 16.867 -1.324 -2.816 1.801  H6  3Y2 29 
3Y2 H7  H7  H  0 1 N N N N N N 52.906 17.030 15.575 -2.901 -3.371 2.413  H7  3Y2 30 
3Y2 H8  H8  H  0 1 N N N N N N 54.180 18.701 14.434 -2.118 -4.802 0.545  H8  3Y2 31 
3Y2 H9  H9  H  0 1 N N N N N N 54.642 18.769 16.169 -3.603 -3.927 0.101  H9  3Y2 32 
3Y2 H10 H10 H  0 1 N N N N N N 54.454 21.065 15.270 -0.759 -3.085 -0.618 H10 3Y2 33 
3Y2 H11 H11 H  0 1 N N N N N N 53.110 20.787 16.429 -1.933 -3.831 -1.729 H11 3Y2 34 
3Y2 H12 H12 H  0 1 N N N N N N 52.918 20.163 13.444 -3.475 -1.920 -1.382 H12 3Y2 35 
3Y2 H13 H13 H  0 1 N N N N N N 52.398 21.729 14.155 -1.898 -1.366 -1.994 H13 3Y2 36 
3Y2 H14 H14 H  0 1 N N N N N N 51.324 20.649 12.180 -1.678 1.438  1.102  H14 3Y2 37 
3Y2 H15 H15 H  0 1 N N N N N N 47.713 18.841 9.360  -1.507 5.589  1.196  H15 3Y2 38 
3Y2 H16 H16 H  0 1 N N N N N N 50.724 19.995 16.829 -0.486 -1.106 1.242  H16 3Y2 39 
3Y2 H17 H17 H  0 1 N N N N N N 47.446 24.385 18.680 4.372  0.823  -1.648 H17 3Y2 40 
3Y2 H18 H18 H  0 1 N N N N N N 49.283 20.997 20.476 3.697  -0.939 2.180  H18 3Y2 41 
3Y2 H19 H19 H  0 1 N N N N N N 50.529 20.567 18.401 1.281  -1.007 1.747  H19 3Y2 42 
3Y2 H20 H20 H  0 1 N N N N N N 47.990 24.954 16.707 0.880  0.924  -2.529 H20 3Y2 43 
3Y2 H21 H21 H  0 1 N N N N N N 49.546 24.773 16.246 2.452  1.137  -3.082 H21 3Y2 44 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
3Y2 N1  C1  DOUB N N 1  
3Y2 C1  C2  SING N N 2  
3Y2 C2  N3  SING N N 3  
3Y2 N3  C4  SING N N 4  
3Y2 C4  O5  DOUB N N 5  
3Y2 C4  C6  SING N N 6  
3Y2 C11 C6  SING N N 7  
3Y2 C11 C10 SING N N 8  
3Y2 C6  C7  SING N N 9  
3Y2 C6  N12 SING N N 10 
3Y2 C7  C8  SING N N 11 
3Y2 O14 C13 DOUB N N 12 
3Y2 C9  C10 SING N N 13 
3Y2 C9  C8  SING N N 14 
3Y2 N12 C13 SING N N 15 
3Y2 C13 C15 SING N N 16 
3Y2 N21 C16 SING N N 17 
3Y2 C15 C16 DOUB Y N 18 
3Y2 C15 C20 SING Y N 19 
3Y2 C16 C17 SING Y N 20 
3Y2 C20 C19 DOUB Y N 21 
3Y2 C17 C18 DOUB Y N 22 
3Y2 C19 C18 SING Y N 23 
3Y2 C18 CL2 SING N N 24 
3Y2 C1  H1  SING N N 25 
3Y2 C2  H2  SING N N 26 
3Y2 C2  H3  SING N N 27 
3Y2 C7  H4  SING N N 28 
3Y2 C7  H5  SING N N 29 
3Y2 C8  H6  SING N N 30 
3Y2 C8  H7  SING N N 31 
3Y2 C9  H8  SING N N 32 
3Y2 C9  H9  SING N N 33 
3Y2 C10 H10 SING N N 34 
3Y2 C10 H11 SING N N 35 
3Y2 C11 H12 SING N N 36 
3Y2 C11 H13 SING N N 37 
3Y2 N3  H14 SING N N 38 
3Y2 N1  H15 SING N N 39 
3Y2 N12 H16 SING N N 40 
3Y2 C17 H17 SING N N 41 
3Y2 C19 H18 SING N N 42 
3Y2 C20 H19 SING N N 43 
3Y2 N21 H20 SING N N 44 
3Y2 N21 H21 SING N N 45 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
3Y2 SMILES           ACDLabs              12.01 "O=C(NC1(C(=O)NCC=[N@H])CCCCC1)c2ccc(Cl)cc2N"                                                                                                     
3Y2 InChI            InChI                1.03  "InChI=1S/C16H21ClN4O2/c17-11-4-5-12(13(19)10-11)14(22)21-16(6-2-1-3-7-16)15(23)20-9-8-18/h4-5,8,10,18H,1-3,6-7,9,19H2,(H,20,23)(H,21,22)/b18-8+" 
3Y2 InChIKey         InChI                1.03  PCXBCOKRJKMVFF-QGMBQPNBSA-N                                                                                                                       
3Y2 SMILES_CANONICAL CACTVS               3.385 "Nc1cc(Cl)ccc1C(=O)NC2(CCCCC2)C(=O)NCC=N"                                                                                                         
3Y2 SMILES           CACTVS               3.385 "Nc1cc(Cl)ccc1C(=O)NC2(CCCCC2)C(=O)NCC=N"                                                                                                         
3Y2 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "[H]/N=C/CNC(=O)C1(CCCCC1)NC(=O)c2ccc(cc2N)Cl"                                                                                                    
3Y2 SMILES           "OpenEye OEToolkits" 1.9.2 "c1cc(c(cc1Cl)N)C(=O)NC2(CCCCC2)C(=O)NCC=N"                                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
3Y2 "SYSTEMATIC NAME" ACDLabs              12.01 "2-amino-4-chloro-N-(1-{[(2E)-2-iminoethyl]carbamoyl}cyclohexyl)benzamide"     
3Y2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "2-azanyl-N-[1-(2-azanylideneethylcarbamoyl)cyclohexyl]-4-chloranyl-benzamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
3Y2 "Create component" 2014-12-09 EBI  
3Y2 "Initial release"  2015-09-09 RCSB 
3Y2 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            3Y2 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C1 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
