data_3I2
# 
_chem_comp.id                                    3I2 
_chem_comp.name                                  "D-3-deoxy-myo-inositol 1,4,6-trisphosphate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C6 H15 O14 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "[(1R,2S,3R,4R,5R)-2,5-bis(oxidanyl)-3,4-diphosphonooxy-cyclohexyl] dihydrogen phosphate" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-07-12 
_chem_comp.pdbx_modified_date                    2024-02-23 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        404.096 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     3I2 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8PPB 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
3I2 C1  C1  C 0 1 N N R N N N 11.751 28.000 85.501 0.891  1.123  -0.162 C1  3I2 1  
3I2 C2  C2  C 0 1 N N R N N N 11.738 27.791 84.007 -0.077 2.127  0.468  C2  3I2 2  
3I2 C3  C3  C 0 1 N N N N N N 10.348 28.070 83.459 -1.427 2.051  -0.248 C3  3I2 3  
3I2 O2  O1  O 0 1 N N N N N N 12.711 28.647 83.408 -0.254 1.816  1.851  O2  3I2 4  
3I2 P6  P1  P 0 1 N N N N N N 11.564 30.676 88.286 1.904  -2.428 0.216  P6  3I2 5  
3I2 O26 O2  O 0 1 N N N N N N 11.302 30.267 89.718 0.765  -3.457 0.703  O26 3I2 6  
3I2 O6  O3  O 0 1 N N N N N N 11.190 29.440 87.313 1.224  -1.228 -0.613 O6  3I2 7  
3I2 O36 O4  O 0 1 N N N N N N 10.604 31.727 87.768 2.606  -1.877 1.396  O36 3I2 8  
3I2 O16 O5  O 0 1 N N N N N N 13.015 30.999 88.009 2.958  -3.201 -0.724 O16 3I2 9  
3I2 C4  C4  C 0 1 N N R N N N 9.840  29.446 83.846 -1.998 0.638  -0.112 C4  3I2 10 
3I2 C5  C5  C 0 1 N N S N N N 9.831  29.615 85.358 -1.030 -0.366 -0.742 C5  3I2 11 
3I2 C6  C6  C 0 1 N N R N N N 11.228 29.368 85.879 0.320  -0.290 -0.025 C6  3I2 12 
3I2 O1  O6  O 0 1 N N N N N N 13.106 27.962 85.974 2.152  1.194  0.507  O1  3I2 13 
3I2 O4  O7  O 0 1 N N N N N N 8.462  29.573 83.373 -3.259 0.568  -0.781 O4  3I2 14 
3I2 O5  O8  O 0 1 N N N N N N 9.414  30.926 85.717 -1.564 -1.685 -0.614 O5  3I2 15 
3I2 P1  P2  P 0 1 N N N N N N 13.741 26.592 86.563 3.523  1.572  -0.246 P1  3I2 16 
3I2 O11 O9  O 0 1 N N N N N N 12.814 26.056 87.633 3.879  0.428  -1.321 O11 3I2 17 
3I2 O21 O10 O 0 1 N N N N N N 13.782 25.698 85.337 3.363  2.869  -0.940 O21 3I2 18 
3I2 O31 O11 O 0 1 N N N N N N 15.102 26.940 87.113 4.714  1.685  0.832  O31 3I2 19 
3I2 P4  P3  P 0 1 N N N N N N 8.133  30.046 81.862 -4.631 0.189  -0.028 P4  3I2 20 
3I2 O14 O12 O 0 1 N N N N N N 8.459  31.519 81.888 -4.550 -1.329 0.504  O14 3I2 21 
3I2 O24 O13 O 0 1 N N N N N N 9.095  29.252 80.995 -4.834 1.103  1.118  O24 3I2 22 
3I2 O34 O14 O 0 1 N N N N N N 6.689  29.759 81.515 -5.864 0.333  -1.054 O34 3I2 23 
3I2 H1  H1  H 0 1 N N N N N N 11.145 27.223 85.990 1.025  1.360  -1.217 H1  3I2 24 
3I2 H2  H2  H 0 1 N N N N N N 11.990 26.741 83.798 0.329  3.134  0.371  H2  3I2 25 
3I2 H3  H3  H 0 1 N N N N N N 9.654  27.313 83.854 -2.117 2.767  0.200  H3  3I2 26 
3I2 H4  H4  H 0 1 N N N N N N 10.380 28.001 82.362 -1.293 2.289  -1.304 H4  3I2 27 
3I2 H5  H5  H 0 1 N N N N N N 13.569 28.452 83.767 -0.857 2.413  2.315  H5  3I2 28 
3I2 H6  H6  H 0 1 N N N N N N 10.559 30.753 90.056 0.262  -3.858 -0.020 H6  3I2 29 
3I2 H7  H7  H 0 1 N N N N N N 13.073 31.827 87.546 3.407  -3.938 -0.288 H7  3I2 30 
3I2 H8  H8  H 0 1 N N N N N N 10.477 30.219 83.391 -2.133 0.401  0.943  H8  3I2 31 
3I2 H9  H9  H 0 1 N N N N N N 9.151  28.868 85.794 -0.896 -0.128 -1.797 H9  3I2 32 
3I2 H10 H10 H 0 1 N N N N N N 11.905 30.137 85.478 0.185  -0.527 1.030  H10 3I2 33 
3I2 H11 H11 H 0 1 N N N N N N 9.880  31.205 86.497 -2.421 -1.806 -1.046 H11 3I2 34 
3I2 H12 H12 H 0 1 N N N N N N 12.421 25.244 87.335 3.999  -0.451 -0.935 H12 3I2 35 
3I2 H13 H13 H 0 1 N N N N N N 15.773 26.528 86.582 5.572  1.911  0.449  H13 3I2 36 
3I2 H14 H14 H 0 1 N N N N N N 9.222  31.685 81.347 -4.417 -1.984 -0.195 H14 3I2 37 
3I2 H15 H15 H 0 1 N N N N N N 6.653  29.125 80.808 -6.724 0.119  -0.667 H15 3I2 38 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
3I2 O24 P4  DOUB N N 1  
3I2 O34 P4  SING N N 2  
3I2 P4  O14 SING N N 3  
3I2 P4  O4  SING N N 4  
3I2 O4  C4  SING N N 5  
3I2 O2  C2  SING N N 6  
3I2 C3  C4  SING N N 7  
3I2 C3  C2  SING N N 8  
3I2 C4  C5  SING N N 9  
3I2 C2  C1  SING N N 10 
3I2 O21 P1  DOUB N N 11 
3I2 C5  O5  SING N N 12 
3I2 C5  C6  SING N N 13 
3I2 C1  C6  SING N N 14 
3I2 C1  O1  SING N N 15 
3I2 C6  O6  SING N N 16 
3I2 O1  P1  SING N N 17 
3I2 P1  O31 SING N N 18 
3I2 P1  O11 SING N N 19 
3I2 O6  P6  SING N N 20 
3I2 O36 P6  DOUB N N 21 
3I2 O16 P6  SING N N 22 
3I2 P6  O26 SING N N 23 
3I2 C1  H1  SING N N 24 
3I2 C2  H2  SING N N 25 
3I2 C3  H3  SING N N 26 
3I2 C3  H4  SING N N 27 
3I2 O2  H5  SING N N 28 
3I2 O26 H6  SING N N 29 
3I2 O16 H7  SING N N 30 
3I2 C4  H8  SING N N 31 
3I2 C5  H9  SING N N 32 
3I2 C6  H10 SING N N 33 
3I2 O5  H11 SING N N 34 
3I2 O11 H12 SING N N 35 
3I2 O31 H13 SING N N 36 
3I2 O14 H14 SING N N 37 
3I2 O34 H15 SING N N 38 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
3I2 InChI            InChI                1.06  "InChI=1S/C6H15O14P3/c7-2-1-3(18-21(9,10)11)4(8)6(20-23(15,16)17)5(2)19-22(12,13)14/h2-8H,1H2,(H2,9,10,11)(H2,12,13,14)(H2,15,16,17)/t2-,3-,4+,5-,6-/m1/s1" 
3I2 InChIKey         InChI                1.06  GHYKQXTYUPPQMF-VFUOTHLCSA-N                                                                                                                                 
3I2 SMILES_CANONICAL CACTVS               3.385 "O[C@@H]1C[C@@H](O[P](O)(O)=O)[C@H](O)[C@@H](O[P](O)(O)=O)[C@@H]1O[P](O)(O)=O"                                                                              
3I2 SMILES           CACTVS               3.385 "O[CH]1C[CH](O[P](O)(O)=O)[CH](O)[CH](O[P](O)(O)=O)[CH]1O[P](O)(O)=O"                                                                                       
3I2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1[C@H]([C@H]([C@@H]([C@H]([C@@H]1OP(=O)(O)O)O)OP(=O)(O)O)OP(=O)(O)O)O"                                                                                    
3I2 SMILES           "OpenEye OEToolkits" 2.0.7 "C1C(C(C(C(C1OP(=O)(O)O)O)OP(=O)(O)O)OP(=O)(O)O)O"                                                                                                          
# 
_pdbx_chem_comp_identifier.comp_id           3I2 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[(1~{R},2~{S},3~{R},4~{R},5~{R})-2,5-bis(oxidanyl)-3,4-diphosphonooxy-cyclohexyl] dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
3I2 "Create component" 2023-07-12 PDBE 
3I2 "Initial release"  2024-02-28 RCSB 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      3I2 
_pdbx_chem_comp_synonyms.name         "[(1R,2S,3R,4R,5R)-2,5-bis(oxidanyl)-3,4-diphosphonooxy-cyclohexyl] dihydrogen phosphate" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
