data_312
#

_chem_comp.id                                   312
_chem_comp.name                                 "2-(5-{5-[AMINO(IMINIO)METHYL]-1H-BENZIMIDAZOL-2-YL}-2'-METHOXY-6-OXIDO-1,1'-BIPHENYL-3-YL)SUCCINATE"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C25 H20 N4 O6"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        CRA_17312
_chem_comp.pdbx_formal_charge                   -2
_chem_comp.pdbx_initial_date                    2003-03-14
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       472.450
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    312
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1O2Z
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
312  C1      C1      C   0  1  Y  N  N  44.279  -3.053  25.951   5.965  -0.285  -0.012  C1      312   1  
312  C2      C2      C   0  1  Y  N  N  44.594  -1.659  25.997   5.776  -1.431   0.770  C2      312   2  
312  C3      C3      C   0  1  Y  N  N  44.524  -0.907  27.185   4.517  -1.868   1.067  C3      312   3  
312  C4      C4      C   0  1  Y  N  N  44.112  -1.570  28.321   3.409  -1.175   0.594  C4      312   4  
312  C5      C5      C   0  1  Y  N  N  43.789  -2.872  28.325   3.579  -0.021  -0.193  C5      312   5  
312  C6      C6      C   0  1  Y  N  N  43.859  -3.665  27.173   4.868   0.421  -0.494  C6      312   6  
312  C7      C7      C   0  1  N  N  N  44.353  -3.773  24.740   7.334   0.177  -0.325  C7      312   7  
312  N1      N1      N   0  1  N  N  N  43.912  -5.016  24.690   8.386  -0.498   0.136  N1      312   8  
312  N2      N2      N   1  1  N  N  N  44.865  -3.200  23.667   7.515   1.267  -1.068  N2      312   9  
312  N3      N3      N   0  1  Y  N  N  43.927  -1.147  29.527   2.047  -1.358   0.718  N3      312  10  
312  N4      N4      N   0  1  Y  N  N  43.413  -3.296  29.520   2.342   0.434  -0.511  N4      312  11  
312  C8      C8      C   0  1  Y  N  N  43.526  -2.169  30.219   1.436  -0.346   0.027  C8      312  12  
312  "C1'"   "C1'"   C   0  1  Y  N  N  43.249  -2.092  31.619  -0.025  -0.164  -0.098  "C1'"   312  13  
312  "C2'"   "C2'"   C   0  1  Y  N  N  42.892  -3.229  32.365  -0.579   1.116  -0.037  "C2'"   312  14  
312  "C3'"   "C3'"   C   0  1  Y  N  N  42.623  -3.166  33.734  -1.943   1.287  -0.155  "C3'"   312  15  
312  CVX     "C31'"  C   0  1  N  N  R  42.229  -4.439  34.527  -2.533   2.673  -0.089  CVX     312  16  
312  CWX     "C32'"  C   0  1  N  N  N  40.786  -4.723  34.064  -1.960   3.516  -1.199  CWX     312  17  
312  OXX     "O33'"  O   0  1  N  N  N  40.687  -5.497  33.119  -1.148   3.036  -1.972  OXX     312  18  
312  OYX     "O34'"  O  -1  1  N  N  N  39.860  -4.165  34.637  -2.308   4.678  -1.324  OYX     312  19  
312  C6X     "C42'"  C   0  1  N  N  N  42.380  -4.292  36.148  -2.193   3.308   1.261  C6X     312  20  
312  C7X     "C43'"  C   0  1  N  N  N  43.228  -5.421  36.850  -2.884   4.642   1.377  C7X     312  21  
312  O8X     "O44'"  O   0  1  N  N  N  43.069  -6.588  36.512  -3.615   5.066   0.422  O8X     312  22  
312  O9X     "O45'"  O  -1  1  N  N  N  44.024  -5.080  37.724  -2.737   5.347   2.429  O9X     312  23  
312  "C4'"   "C4'"   C   0  1  Y  N  N  42.720  -1.960  34.372  -2.772   0.196  -0.333  "C4'"   312  24  
312  "C5'"   "C5'"   C   0  1  Y  N  N  43.073  -0.816  33.724  -2.237  -1.088  -0.396  "C5'"   312  25  
312  "C6'"   "C6'"   C   0  1  Y  N  N  43.329  -0.875  32.348  -0.858  -1.274  -0.272  "C6'"   312  26  
312  "O6'"   "O6'"   O  -1  1  N  N  N  43.626   0.298  31.668  -0.329  -2.522  -0.332  "O6'"   312  27  
312  C1B     "C1''"  C   0  1  Y  N  N  43.248   0.309  34.525  -3.130  -2.257  -0.587  C1B     312  28  
312  C2B     "C2''"  C   0  1  Y  N  N  42.211   0.956  35.249  -3.246  -3.224   0.417  C2B     312  29  
312  C3B     "C3''"  C   0  1  Y  N  N  42.503   2.076  36.045  -4.083  -4.312   0.230  C3B     312  30  
312  C4B     "C4''"  C   0  1  Y  N  N  43.788   2.562  36.131  -4.796  -4.443  -0.946  C4B     312  31  
312  C5B     "C5''"  C   0  1  Y  N  N  44.812   1.956  35.443  -4.679  -3.491  -1.944  C5B     312  32  
312  C6B     "C6''"  C   0  1  Y  N  N  44.546   0.833  34.644  -3.850  -2.402  -1.771  C6B     312  33  
312  O2B     "O2''"  O   0  1  N  N  N  40.908   0.489  35.184  -2.545  -3.093   1.573  O2B     312  34  
312  CME     CME     C   0  1  N  N  N  39.783   1.326  35.489  -2.877  -4.220   2.387  CME     312  35  
312  HC2     HC2     H   0  1  N  N  N  44.922  -1.156  25.104   6.633  -1.974   1.141  HC2     312  36  
312  HC3     HC3     H   0  1  N  N  N  44.773   0.145  27.207   4.382  -2.753   1.670  HC3     312  37  
312  HC6     HC6     H   0  1  N  N  N  43.601  -4.714  27.222   5.013   1.306  -1.097  HC6     312  38  
312  HH11    HH11    H   0  0  N  N  N  43.569  -5.438  25.545   9.284  -0.195  -0.069  HH11    312  39  
312  HH12    HH12    H   0  0  N  N  N  43.936  -5.624  23.900   8.253  -1.292   0.678  HH12    312  40  
312  HH21    HH21    H   0  0  N  N  N  45.236  -2.265  23.720   6.749   1.758  -1.404  HH21    312  41  
312  HH22    HH22    H   0  0  N  N  N  44.968  -3.672  22.797   8.414   1.570  -1.274  HH22    312  42  
312  HN3     HN3     H   0  1  N  N  N  44.044  -0.233  29.891   1.605  -2.072   1.204  HN3     312  43  
312  "HC2'"  "HC2'"  H   0  0  N  N  N  42.821  -4.186  31.866   0.062   1.975   0.102  "HC2'"  312  44  
312  H31B    H31B    H   0  0  N  N  N  42.862  -5.247  34.192  -3.615   2.613  -0.200  H31B    312  45  
312  H42A    H42A    H   0  0  N  N  N  42.869  -3.371  36.418  -2.530   2.654   2.065  H42A    312  46  
312  H42B    H42B    H   0  0  N  N  N  41.403  -4.269  36.615  -1.115   3.449   1.335  H42B    312  47  
312  "HC4'"  "HC4'"  H   0  0  N  N  N  42.505  -1.874  35.424  -3.839   0.340  -0.425  "HC4'"  312  48  
312  H3B     "H3''"  H   0  1  N  N  N  41.723   2.577  36.599  -4.178  -5.059   1.005  H3B     312  49  
312  H4B     "H4''"  H   0  1  N  N  N  43.984   3.427  36.751  -5.447  -5.294  -1.089  H4B     312  50  
312  H5B     "H5''"  H   0  1  N  N  N  45.812   2.352  35.525  -5.239  -3.601  -2.861  H5B     312  51  
312  H6B     "H6''"  H   0  1  N  N  N  45.354   0.368  34.102  -3.761  -1.660  -2.551  H6B     312  52  
312  HME1    HME1    H   0  0  N  N  N  38.979   1.113  34.799  -2.336  -4.159   3.331  HME1    312  53  
312  HME2    HME2    H   0  0  N  N  N  40.033   2.377  35.420  -3.950  -4.223   2.583  HME2    312  54  
312  HME3    HME3    H   0  0  N  N  N  39.446   1.109  36.495  -2.600  -5.137   1.868  HME3    312  55  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
312  C1     C2      DOUB  Y  N   1  
312  C1     C6      SING  Y  N   2  
312  C1     C7      SING  N  N   3  
312  C2     C3      SING  Y  N   4  
312  C2     HC2     SING  N  N   5  
312  C3     C4      DOUB  Y  N   6  
312  C3     HC3     SING  N  N   7  
312  C4     C5      SING  Y  N   8  
312  C4     N3      SING  Y  N   9  
312  C5     C6      DOUB  Y  N  10  
312  C5     N4      SING  Y  N  11  
312  C6     HC6     SING  N  N  12  
312  C7     N1      SING  N  N  13  
312  C7     N2      DOUB  N  N  14  
312  N1     HH11    SING  N  N  15  
312  N1     HH12    SING  N  N  16  
312  N2     HH21    SING  N  N  17  
312  N2     HH22    SING  N  N  18  
312  N3     C8      SING  Y  N  19  
312  N3     HN3     SING  N  N  20  
312  N4     C8      DOUB  Y  N  21  
312  C8     "C1'"   SING  Y  N  22  
312  "C1'"  "C2'"   DOUB  Y  N  23  
312  "C1'"  "C6'"   SING  Y  N  24  
312  "C2'"  "C3'"   SING  Y  N  25  
312  "C2'"  "HC2'"  SING  N  N  26  
312  "C3'"  CVX     SING  N  N  27  
312  "C3'"  "C4'"   DOUB  Y  N  28  
312  CVX    CWX     SING  N  N  29  
312  CVX    C6X     SING  N  N  30  
312  CVX    H31B    SING  N  N  31  
312  CWX    OXX     DOUB  N  N  32  
312  CWX    OYX     SING  N  N  33  
312  C6X    C7X     SING  N  N  34  
312  C6X    H42A    SING  N  N  35  
312  C6X    H42B    SING  N  N  36  
312  C7X    O8X     DOUB  N  N  37  
312  C7X    O9X     SING  N  N  38  
312  "C4'"  "C5'"   SING  Y  N  39  
312  "C4'"  "HC4'"  SING  N  N  40  
312  "C5'"  "C6'"   DOUB  Y  N  41  
312  "C5'"  C1B     SING  Y  N  42  
312  "C6'"  "O6'"   SING  N  N  43  
312  C1B    C2B     DOUB  Y  N  44  
312  C1B    C6B     SING  Y  N  45  
312  C2B    C3B     SING  Y  N  46  
312  C2B    O2B     SING  N  N  47  
312  C3B    C4B     DOUB  Y  N  48  
312  C3B    H3B     SING  N  N  49  
312  C4B    C5B     SING  Y  N  50  
312  C4B    H4B     SING  N  N  51  
312  C5B    C6B     DOUB  Y  N  52  
312  C5B    H5B     SING  N  N  53  
312  C6B    H6B     SING  N  N  54  
312  O2B    CME     SING  N  N  55  
312  CME    HME1    SING  N  N  56  
312  CME    HME2    SING  N  N  57  
312  CME    HME3    SING  N  N  58  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
312  SMILES            ACDLabs               10.04  "[O-]C(=O)CC(C([O-])=O)c4cc(c2nc1cc(ccc1n2)\C(=[NH2+])N)c([O-])c(c3ccccc3OC)c4"  
312  SMILES_CANONICAL  CACTVS                3.341  "COc1ccccc1c2cc(cc(c2[O-])c3[nH]c4ccc(cc4n3)C(N)=[NH2+])[C@@H](CC([O-])=O)C([O-])=O"  
312  SMILES            CACTVS                3.341  "COc1ccccc1c2cc(cc(c2[O-])c3[nH]c4ccc(cc4n3)C(N)=[NH2+])[CH](CC([O-])=O)C([O-])=O"  
312  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "COc1ccccc1c2cc(cc(c2[O-])c3[nH]c4ccc(cc4n3)C(=[NH2+])N)[C@@H](CC(=O)[O-])C(=O)[O-]"  
312  SMILES            "OpenEye OEToolkits"  1.5.0  "COc1ccccc1c2cc(cc(c2[O-])c3[nH]c4ccc(cc4n3)C(=[NH2+])N)C(CC(=O)[O-])C(=O)[O-]"  
312  InChI             InChI                 1.03   "InChI=1S/C25H22N4O6/c1-35-20-5-3-2-4-14(20)16-8-13(15(25(33)34)11-21(30)31)9-17(22(16)32)24-28-18-7-6-12(23(26)27)10-19(18)29-24/h2-10,15,32H,11H2,1H3,(H3,26,27)(H,28,29)(H,30,31)(H,33,34)/p-2/t15-/m1/s1"  
312  InChIKey          InChI                 1.03   HVNXYZZCSQONQC-OAHLLOKOSA-L  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
312  "SYSTEMATIC NAME"  ACDLabs               10.04  "(2R)-2-(5-{5-[amino(iminio)methyl]-1H-benzimidazol-2-yl}-2'-methoxy-6-oxidobiphenyl-3-yl)butanedioate"  
312  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(2R)-2-[3-[5-(amino-azaniumylidene-methyl)-1H-benzimidazol-2-yl]-5-(2-methoxyphenyl)-4-oxido-phenyl]butanedioate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
312  "Create component"      2003-03-14  RCSB  
312  "Modify aromatic_flag"  2011-06-04  RCSB  
312  "Modify descriptor"     2011-06-04  RCSB  
312  "Modify synonyms"       2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     312
_pdbx_chem_comp_synonyms.name        CRA_17312
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
