data_1D2
# 
_chem_comp.id                                    1D2 
_chem_comp.name                                  "CYCLODODECYL 3,4,6-TRIDEOXY-3-(DIMETHYLAMINO)-BETA-D-XYLO-HEXOPYRANOSIDE" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             ? 
_chem_comp.formula                               "C20 H39 N O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2009-05-08 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        341.529 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     1D2 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2WI9 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
1D2 O2   O2   O 0 1 N N N 19.929 11.602 15.367 -3.006 1.419  -1.726 O2   1D2 1  
1D2 C10  C10  C 0 1 N N R 20.055 10.672 14.287 -2.868 0.292  -0.860 C10  1D2 2  
1D2 C9   C9   C 0 1 N N S 21.053 11.086 13.234 -1.439 0.238  -0.313 C9   1D2 3  
1D2 O3   O3   O 0 1 N N N 21.003 10.081 12.193 -1.319 -0.856 0.598  O3   1D2 4  
1D2 C15  C15  C 0 1 N N R 20.521 8.722  12.384 -2.179 -0.765 1.736  C15  1D2 5  
1D2 C16  C16  C 0 1 N N N 19.541 8.313  11.285 -1.945 -1.969 2.650  C16  1D2 6  
1D2 C14  C14  C 0 1 N N N 19.878 8.381  13.721 -3.638 -0.751 1.272  C14  1D2 7  
1D2 C11  C11  C 0 1 N N S 20.540 9.300  14.704 -3.849 0.422  0.310  C11  1D2 8  
1D2 N    N    N 0 1 N N N 19.991 9.021  15.998 -5.227 0.398  -0.199 N    1D2 9  
1D2 C12  C12  C 0 1 N N N 20.236 10.296 16.653 -5.564 -0.924 -0.743 C12  1D2 10 
1D2 C13  C13  C 0 1 N N N 20.804 7.959  16.597 -6.180 0.798  0.844  C13  1D2 11 
1D2 O1   O1   O 0 1 N N N 20.638 12.338 12.676 -0.522 0.060  -1.395 O1   1D2 12 
1D2 C8   C8   C 0 1 N N N 21.099 13.575 13.270 0.852  0.110  -1.005 C8   1D2 13 
1D2 C7   C7   C 0 1 N N N 19.889 14.350 13.808 1.679  -0.775 -1.941 C7   1D2 14 
1D2 C6   C6   C 0 1 N N N 20.124 15.848 13.911 2.236  -1.965 -1.157 C6   1D2 15 
1D2 C5   C5   C 0 1 N N N 21.041 16.291 12.784 3.751  -2.041 -1.354 C5   1D2 16 
1D2 C4   C4   C 0 1 N N N 20.913 17.761 12.430 4.441  -2.085 0.011  C4   1D2 17 
1D2 C3   C3   C 0 1 N N N 21.962 18.595 13.170 5.499  -0.981 0.084  C3   1D2 18 
1D2 C2   C2   C 0 1 N N N 23.362 18.437 12.599 5.262  -0.129 1.332  C2   1D2 19 
1D2 C1   C1   C 0 1 N N N 24.255 17.646 13.567 5.174  1.345  0.934  C1   1D2 20 
1D2 C20  C20  C 0 1 N N N 24.130 16.136 13.360 3.879  1.946  1.484  C20  1D2 21 
1D2 C19  C19  C 0 1 N N N 24.017 15.280 14.630 3.102  2.612  0.347  C19  1D2 22 
1D2 C18  C18  C 0 1 N N N 22.579 14.810 14.905 1.674  2.065  0.315  C18  1D2 23 
1D2 C17  C17  C 0 1 N N N 22.168 13.438 14.363 1.355  1.552  -1.091 C17  1D2 24 
1D2 H22O H22O H 0 0 N N N 19.901 11.130 16.191 -2.410 1.405  -2.488 H22O 1D2 25 
1D2 H10  H10  H 0 1 N N N 19.024 10.651 13.904 -3.080 -0.622 -1.414 H10  1D2 26 
1D2 H9   H9   H 0 1 N N N 22.064 11.183 13.655 -1.213 1.169  0.206  H9   1D2 27 
1D2 H11  H11  H 0 1 N N N 21.636 9.205  14.731 -3.669 1.360  0.834  H11  1D2 28 
1D2 H15  H15  H 0 1 N N N 21.462 8.153  12.348 -1.962 0.154  2.282  H15  1D2 29 
1D2 H161 H161 H 0 0 N N N 18.532 8.215  11.711 -0.906 -1.979 2.979  H161 1D2 30 
1D2 H162 H162 H 0 0 N N N 19.533 9.080  10.497 -2.601 -1.899 3.518  H162 1D2 31 
1D2 H163 H163 H 0 0 N N N 19.853 7.349  10.856 -2.162 -2.887 2.104  H163 1D2 32 
1D2 H141 H141 H 0 0 N N N 18.791 8.548  13.692 -3.866 -1.687 0.761  H141 1D2 33 
1D2 H142 H142 H 0 0 N N N 20.011 7.322  13.988 -4.293 -0.637 2.135  H142 1D2 34 
1D2 H121 H121 H 0 0 N N N 20.298 10.144 17.741 -5.469 -1.675 0.042  H121 1D2 35 
1D2 H122 H122 H 0 0 N N N 21.183 10.720 16.288 -6.590 -0.914 -1.112 H122 1D2 36 
1D2 H131 H131 H 0 0 N N N 21.008 7.184  15.844 -5.988 1.831  1.135  H131 1D2 37 
1D2 H132 H132 H 0 0 N N N 21.755 8.382  16.954 -7.197 0.712  0.460  H132 1D2 38 
1D2 H133 H133 H 0 0 N N N 20.260 7.514  17.443 -6.064 0.148  1.711  H133 1D2 39 
1D2 H8   H8   H 0 1 N N N 21.608 14.119 12.461 0.953  -0.250 0.018  H8   1D2 40 
1D2 H71C H71C H 0 0 N N N 19.044 14.182 13.124 1.048  -1.137 -2.752 H71C 1D2 41 
1D2 H72C H72C H 0 0 N N N 19.692 13.981 14.825 2.504  -0.194 -2.354 H72C 1D2 42 
1D2 H171 H171 H 0 0 N N N 21.760 12.835 15.188 2.256  1.588  -1.703 H171 1D2 43 
1D2 H172 H172 H 0 0 N N N 23.054 12.953 13.928 0.585  2.179  -1.540 H172 1D2 44 
1D2 H61C H61C H 0 0 N N N 19.163 16.377 13.833 2.013  -1.839 -0.098 H61C 1D2 45 
1D2 H62C H62C H 0 0 N N N 20.591 16.082 14.879 1.776  -2.885 -1.519 H62C 1D2 46 
1D2 H51C H51C H 0 0 N N N 22.079 16.105 13.097 4.000  -2.942 -1.915 H51C 1D2 47 
1D2 H52C H52C H 0 0 N N N 20.753 15.718 11.890 4.091  -1.164 -1.905 H52C 1D2 48 
1D2 H41C H41C H 0 0 N N N 21.059 17.882 11.346 3.701  -1.931 0.797  H41C 1D2 49 
1D2 H42C H42C H 0 0 N N N 19.913 18.109 12.728 4.918  -3.055 0.147  H42C 1D2 50 
1D2 H31C H31C H 0 0 N N N 21.676 19.655 13.094 6.490  -1.431 0.133  H31C 1D2 51 
1D2 H32C H32C H 0 0 N N N 21.989 18.242 14.211 5.429  -0.352 -0.804 H32C 1D2 52 
1D2 H21C H21C H 0 0 N N N 23.302 17.897 11.643 4.330  -0.433 1.809  H21C 1D2 53 
1D2 H22C H22C H 0 0 N N N 23.799 19.435 12.448 6.089  -0.268 2.029  H22C 1D2 54 
1D2 H11C H11C H 0 0 N N N 25.302 17.938 13.397 6.028  1.885  1.345  H11C 1D2 55 
1D2 H12C H12C H 0 0 N N N 23.933 17.877 14.593 5.180  1.429  -0.153 H12C 1D2 56 
1D2 H201 H201 H 0 0 N N N 23.219 15.963 12.768 3.271  1.156  1.925  H201 1D2 57 
1D2 H202 H202 H 0 0 N N N 25.067 15.825 12.875 4.117  2.688  2.245  H202 1D2 58 
1D2 H191 H191 H 0 0 N N N 24.655 14.392 14.508 3.075  3.690  0.508  H191 1D2 59 
1D2 H192 H192 H 0 0 N N N 24.333 15.902 15.480 3.594  2.399  -0.603 H192 1D2 60 
1D2 H181 H181 H 0 0 N N N 22.459 14.771 15.998 1.582  1.247  1.030  H181 1D2 61 
1D2 H182 H182 H 0 0 N N N 21.938 15.530 14.375 0.975  2.859  0.580  H182 1D2 62 
1D2 H123 H123 H 0 0 N N N 19.412 10.989 16.426 -4.885 -1.166 -1.560 H123 1D2 63 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
1D2 O2  C10  SING N N 1  
1D2 C10 C9   SING N N 2  
1D2 C10 C11  SING N N 3  
1D2 C9  O3   SING N N 4  
1D2 C9  O1   SING N N 5  
1D2 O3  C15  SING N N 6  
1D2 C15 C16  SING N N 7  
1D2 C15 C14  SING N N 8  
1D2 C14 C11  SING N N 9  
1D2 C11 N    SING N N 10 
1D2 N   C12  SING N N 11 
1D2 N   C13  SING N N 12 
1D2 O1  C8   SING N N 13 
1D2 C8  C7   SING N N 14 
1D2 C8  C17  SING N N 15 
1D2 C7  C6   SING N N 16 
1D2 C6  C5   SING N N 17 
1D2 C5  C4   SING N N 18 
1D2 C4  C3   SING N N 19 
1D2 C3  C2   SING N N 20 
1D2 C2  C1   SING N N 21 
1D2 C1  C20  SING N N 22 
1D2 C20 C19  SING N N 23 
1D2 C19 C18  SING N N 24 
1D2 C18 C17  SING N N 25 
1D2 O2  H22O SING N N 26 
1D2 C10 H10  SING N N 27 
1D2 C9  H9   SING N N 28 
1D2 C11 H11  SING N N 29 
1D2 C15 H15  SING N N 30 
1D2 C16 H161 SING N N 31 
1D2 C16 H162 SING N N 32 
1D2 C16 H163 SING N N 33 
1D2 C14 H141 SING N N 34 
1D2 C14 H142 SING N N 35 
1D2 C12 H121 SING N N 36 
1D2 C12 H122 SING N N 37 
1D2 C12 H123 SING N N 38 
1D2 C13 H131 SING N N 39 
1D2 C13 H132 SING N N 40 
1D2 C13 H133 SING N N 41 
1D2 C8  H8   SING N N 42 
1D2 C7  H71C SING N N 43 
1D2 C7  H72C SING N N 44 
1D2 C17 H171 SING N N 45 
1D2 C17 H172 SING N N 46 
1D2 C6  H61C SING N N 47 
1D2 C6  H62C SING N N 48 
1D2 C5  H51C SING N N 49 
1D2 C5  H52C SING N N 50 
1D2 C4  H41C SING N N 51 
1D2 C4  H42C SING N N 52 
1D2 C3  H31C SING N N 53 
1D2 C3  H32C SING N N 54 
1D2 C2  H21C SING N N 55 
1D2 C2  H22C SING N N 56 
1D2 C1  H11C SING N N 57 
1D2 C1  H12C SING N N 58 
1D2 C20 H201 SING N N 59 
1D2 C20 H202 SING N N 60 
1D2 C19 H191 SING N N 61 
1D2 C19 H192 SING N N 62 
1D2 C18 H181 SING N N 63 
1D2 C18 H182 SING N N 64 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
1D2 SMILES           ACDLabs              10.04 "O(C1CCCCCCCCCCC1)C2OC(CC(N(C)C)C2O)C"                                                                                                    
1D2 SMILES_CANONICAL CACTVS               3.352 "C[C@@H]1C[C@@H]([C@@H](O)[C@@H](O1)OC2CCCCCCCCCCC2)N(C)C"                                                                                
1D2 SMILES           CACTVS               3.352 "C[CH]1C[CH]([CH](O)[CH](O1)OC2CCCCCCCCCCC2)N(C)C"                                                                                        
1D2 SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 "C[C@@H]1C[C@@H]([C@H]([C@@H](O1)OC2CCCCCCCCCCC2)O)N(C)C"                                                                                 
1D2 SMILES           "OpenEye OEToolkits" 1.6.1 "CC1CC(C(C(O1)OC2CCCCCCCCCCC2)O)N(C)C"                                                                                                    
1D2 InChI            InChI                1.03  "InChI=1S/C20H39NO3/c1-16-15-18(21(2)3)19(22)20(23-16)24-17-13-11-9-7-5-4-6-8-10-12-14-17/h16-20,22H,4-15H2,1-3H3/t16-,18+,19-,20+/m1/s1" 
1D2 InChIKey         InChI                1.03  KZKWNNFETLOBHX-MDNKFWRPSA-N                                                                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
1D2 "SYSTEMATIC NAME" ACDLabs              10.04 "cyclododecyl 3,4,6-trideoxy-3-(dimethylamino)-beta-D-xylo-hexopyranoside" 
1D2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "(2S,3R,4S,6R)-2-cyclododecyloxy-4-dimethylamino-6-methyl-oxan-3-ol"       
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
1D2 "Create component"  2009-05-08 EBI  
1D2 "Modify descriptor" 2011-06-04 RCSB 
# 
