data_0Y2
# 
_chem_comp.id                                    0Y2 
_chem_comp.name                                  "5'-{[(3S)-3-amino-3-carboxypropyl][2-(1-benzothiophen-3-yl)ethyl]amino}-5'-deoxyadenosine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H29 N7 O5 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-09-07 
_chem_comp.pdbx_modified_date                    2014-02-21 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        527.596 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     0Y2 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4GOO 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
0Y2 CBC CBC C 0 1 Y N N 98.063  -12.482 55.587 -5.392 -1.110 -0.542 CBC 0Y2 1  
0Y2 CBG CBG C 0 1 Y N N 99.049  -13.146 54.915 -5.957 0.033  0.062  CBG 0Y2 2  
0Y2 CBH CBH C 0 1 Y N N 98.776  -14.406 54.400 -7.255 0.026  0.473  CBH 0Y2 3  
0Y2 CBI CBI C 0 1 Y N N 97.505  -15.009 54.546 -8.043 -1.104 0.306  CBI 0Y2 4  
0Y2 CBJ CBJ C 0 1 Y N N 96.481  -14.348 55.218 -7.518 -2.232 -0.279 CBJ 0Y2 5  
0Y2 CBD CBD C 0 1 Y N N 96.698  -13.081 55.760 -6.188 -2.247 -0.709 CBD 0Y2 6  
0Y2 S1E S1E S 0 1 Y N N 95.773  -11.839 56.688 -5.247 -3.522 -1.474 S1E 0Y2 7  
0Y2 CBF CBF C 0 1 Y N N 97.010  -10.781 56.793 -3.817 -2.511 -1.552 CBF 0Y2 8  
0Y2 CBB CBB C 0 1 Y N N 98.126  -11.202 56.202 -4.043 -1.317 -1.042 CBB 0Y2 9  
0Y2 CBA CBA C 0 1 N N N 99.459  -10.398 56.136 -2.983 -0.247 -0.982 CBA 0Y2 10 
0Y2 CAZ CAZ C 0 1 N N N 99.997  -9.656  57.364 -2.300 -0.282 0.386  CAZ 0Y2 11 
0Y2 NAR NAR N 0 1 N N N 101.442 -9.908  57.711 -1.267 0.761  0.444  NAR 0Y2 12 
0Y2 CAS CAS C 0 1 N N N 102.184 -8.609  57.633 -1.867 2.100  0.387  CAS 0Y2 13 
0Y2 CB  CB  C 0 1 N N N 101.772 -7.534  56.598 -0.787 3.129  0.047  CB  0Y2 14 
0Y2 CA  CA  C 0 1 N N S 101.493 -6.132  57.077 -1.394 4.534  0.074  CA  0Y2 15 
0Y2 C   C   C 0 1 N N N 100.037 -5.972  57.684 -0.305 5.556  -0.124 C   0Y2 16 
0Y2 OXT OXT O 0 1 N N N 99.237  -5.156  57.178 -0.128 6.047  -1.213 OXT 0Y2 17 
0Y2 O   O   O 0 1 N N N 99.655  -6.645  58.687 0.470  5.919  0.910  O   0Y2 18 
0Y2 N   N   N 0 1 N N N 102.440 -5.696  58.024 -2.385 4.660  -1.003 N   0Y2 19 
0Y2 CAF CAF C 0 1 N N N 101.416 -10.336 59.139 -0.432 0.609  1.643  CAF 0Y2 20 
0Y2 CAA CAA C 0 1 N N R 101.805 -11.698 59.489 0.550  -0.547 1.438  CAA 0Y2 21 
0Y2 OAE OAE O 0 1 N N N 102.507 -11.676 60.785 1.497  -0.222 0.398  OAE 0Y2 22 
0Y2 CAB CAB C 0 1 N N S 100.629 -12.600 59.647 1.410  -0.753 2.705  CAB 0Y2 23 
0Y2 OAH OAH O 0 1 N N N 100.845 -13.777 58.966 0.884  -1.819 3.499  OAH 0Y2 24 
0Y2 CAC CAC C 0 1 N N R 100.525 -12.904 61.078 2.805  -1.125 2.155  CAC 0Y2 25 
0Y2 OAI OAI O 0 1 N N N 100.014 -14.147 61.173 3.183  -2.432 2.592  OAI 0Y2 26 
0Y2 CAD CAD C 0 1 N N R 101.965 -12.726 61.555 2.623  -1.100 0.621  CAD 0Y2 27 
0Y2 N9  N9  N 0 1 Y N N 102.292 -12.545 62.979 3.823  -0.564 -0.026 N9  0Y2 28 
0Y2 C8  C8  C 0 1 Y N N 101.518 -12.012 63.962 4.059  0.743  -0.334 C8  0Y2 29 
0Y2 N7  N7  N 0 1 Y N N 102.184 -12.012 65.142 5.224  0.863  -0.901 N7  0Y2 30 
0Y2 C5  C5  C 0 1 Y N N 103.422 -12.542 64.935 5.808  -0.356 -0.993 C5  0Y2 31 
0Y2 C4  C4  C 0 1 Y N N 103.502 -12.892 63.551 4.919  -1.285 -0.428 C4  0Y2 32 
0Y2 N3  N3  N 0 1 Y N N 104.660 -13.480 63.069 5.264  -2.568 -0.390 N3  0Y2 33 
0Y2 C2  C2  C 0 1 Y N N 105.707 -13.710 63.911 6.422  -2.966 -0.872 C2  0Y2 34 
0Y2 N1  N1  N 0 1 Y N N 105.670 -13.396 65.227 7.291  -2.130 -1.409 N1  0Y2 35 
0Y2 C6  C6  C 0 1 Y N N 104.543 -12.818 65.761 7.030  -0.830 -1.499 C6  0Y2 36 
0Y2 N6  N6  N 0 1 N N N 104.470 -12.487 67.151 7.948  0.039  -2.063 N6  0Y2 37 
0Y2 H1  H1  H 0 1 N N N 100.024 -12.699 54.786 -5.356 0.920  0.199  H1  0Y2 38 
0Y2 H2  H2  H 0 1 N N N 99.554  -14.939 53.874 -7.675 0.908  0.934  H2  0Y2 39 
0Y2 H3  H3  H 0 1 N N N 97.328  -15.991 54.132 -9.071 -1.097 0.636  H3  0Y2 40 
0Y2 H4  H4  H 0 1 N N N 95.514  -14.818 55.320 -8.136 -3.109 -0.407 H4  0Y2 41 
0Y2 H5  H5  H 0 1 N N N 96.931  -9.828  57.295 -2.870 -2.828 -1.965 H5  0Y2 42 
0Y2 H6  H6  H 0 1 N N N 100.240 -11.112 55.836 -2.243 -0.425 -1.763 H6  0Y2 43 
0Y2 H7  H7  H 0 1 N N N 99.330  -9.643  55.347 -3.444 0.729  -1.134 H7  0Y2 44 
0Y2 H8  H8  H 0 1 N N N 99.878  -8.577  57.184 -3.040 -0.104 1.166  H8  0Y2 45 
0Y2 H9  H9  H 0 1 N N N 99.387  -9.953  58.230 -1.839 -1.258 0.538  H9  0Y2 46 
0Y2 H11 H11 H 0 1 N N N 103.236 -8.858  57.428 -2.642 2.119  -0.379 H11 0Y2 47 
0Y2 H12 H12 H 0 1 N N N 102.104 -8.140  58.625 -2.307 2.342  1.355  H12 0Y2 48 
0Y2 H13 H13 H 0 1 N N N 100.858 -7.895  56.104 0.018  3.067  0.779  H13 0Y2 49 
0Y2 H14 H14 H 0 1 N N N 102.585 -7.467  55.860 -0.391 2.924  -0.948 H14 0Y2 50 
0Y2 H15 H15 H 0 1 N N N 101.541 -5.469  56.200 -1.880 4.701  1.035  H15 0Y2 51 
0Y2 H16 H16 H 0 1 N N N 98.763  -6.406  58.908 1.105  6.631  0.754  H16 0Y2 52 
0Y2 H17 H17 H 0 1 N N N 102.218 -4.765  58.314 -2.847 5.556  -0.967 H17 0Y2 53 
0Y2 H18 H18 H 0 1 N N N 102.423 -6.305  58.817 -1.959 4.508  -1.906 H18 0Y2 54 
0Y2 H20 H20 H 0 1 N N N 102.089 -9.660  59.688 0.123  1.530  1.819  H20 0Y2 55 
0Y2 H21 H21 H 0 1 N N N 100.385 -10.196 59.496 -1.067 0.397  2.504  H21 0Y2 56 
0Y2 H22 H22 H 0 1 N N N 102.473 -12.104 58.715 0.011  -1.462 1.191  H22 0Y2 57 
0Y2 H23 H23 H 0 1 N N N 99.718  -12.092 59.299 1.461  0.167  3.286  H23 0Y2 58 
0Y2 H24 H24 H 0 1 N N N 100.092 -14.347 59.071 1.386  -1.992 4.307  H24 0Y2 59 
0Y2 H25 H25 H 0 1 N N N 99.886  -12.160 61.575 3.547  -0.390 2.466  H25 0Y2 60 
0Y2 H26 H26 H 0 1 N N N 99.929  -14.386 62.089 3.253  -2.521 3.553  H26 0Y2 61 
0Y2 H27 H27 H 0 1 N N N 102.487 -13.643 61.243 2.404  -2.100 0.248  H27 0Y2 62 
0Y2 H28 H28 H 0 1 N N N 100.514 -11.641 63.822 3.379  1.558  -0.136 H28 0Y2 63 
0Y2 H29 H29 H 0 1 N N N 106.603 -14.161 63.511 6.672  -4.016 -0.825 H29 0Y2 64 
0Y2 H30 H30 H 0 1 N N N 105.327 -12.741 67.600 7.751  0.988  -2.113 H30 0Y2 65 
0Y2 H31 H31 H 0 1 N N N 104.320 -11.503 67.252 8.788  -0.300 -2.409 H31 0Y2 66 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
0Y2 CBH CBI DOUB Y N 1  
0Y2 CBH CBG SING Y N 2  
0Y2 CBI CBJ SING Y N 3  
0Y2 CBG CBC DOUB Y N 4  
0Y2 CBJ CBD DOUB Y N 5  
0Y2 CBC CBD SING Y N 6  
0Y2 CBC CBB SING Y N 7  
0Y2 CBD S1E SING Y N 8  
0Y2 CBA CBB SING N N 9  
0Y2 CBA CAZ SING N N 10 
0Y2 CBB CBF DOUB Y N 11 
0Y2 CB  CA  SING N N 12 
0Y2 CB  CAS SING N N 13 
0Y2 S1E CBF SING Y N 14 
0Y2 CA  C   SING N N 15 
0Y2 CA  N   SING N N 16 
0Y2 OXT C   DOUB N N 17 
0Y2 CAZ NAR SING N N 18 
0Y2 CAS NAR SING N N 19 
0Y2 C   O   SING N N 20 
0Y2 NAR CAF SING N N 21 
0Y2 OAH CAB SING N N 22 
0Y2 CAF CAA SING N N 23 
0Y2 CAA CAB SING N N 24 
0Y2 CAA OAE SING N N 25 
0Y2 CAB CAC SING N N 26 
0Y2 OAE CAD SING N N 27 
0Y2 CAC OAI SING N N 28 
0Y2 CAC CAD SING N N 29 
0Y2 CAD N9  SING N N 30 
0Y2 N9  C4  SING Y N 31 
0Y2 N9  C8  SING Y N 32 
0Y2 N3  C4  DOUB Y N 33 
0Y2 N3  C2  SING Y N 34 
0Y2 C4  C5  SING Y N 35 
0Y2 C2  N1  DOUB Y N 36 
0Y2 C8  N7  DOUB Y N 37 
0Y2 C5  N7  SING Y N 38 
0Y2 C5  C6  DOUB Y N 39 
0Y2 N1  C6  SING Y N 40 
0Y2 C6  N6  SING N N 41 
0Y2 CBG H1  SING N N 42 
0Y2 CBH H2  SING N N 43 
0Y2 CBI H3  SING N N 44 
0Y2 CBJ H4  SING N N 45 
0Y2 CBF H5  SING N N 46 
0Y2 CBA H6  SING N N 47 
0Y2 CBA H7  SING N N 48 
0Y2 CAZ H8  SING N N 49 
0Y2 CAZ H9  SING N N 50 
0Y2 CAS H11 SING N N 51 
0Y2 CAS H12 SING N N 52 
0Y2 CB  H13 SING N N 53 
0Y2 CB  H14 SING N N 54 
0Y2 CA  H15 SING N N 55 
0Y2 O   H16 SING N N 56 
0Y2 N   H17 SING N N 57 
0Y2 N   H18 SING N N 58 
0Y2 CAF H20 SING N N 59 
0Y2 CAF H21 SING N N 60 
0Y2 CAA H22 SING N N 61 
0Y2 CAB H23 SING N N 62 
0Y2 OAH H24 SING N N 63 
0Y2 CAC H25 SING N N 64 
0Y2 OAI H26 SING N N 65 
0Y2 CAD H27 SING N N 66 
0Y2 C8  H28 SING N N 67 
0Y2 C2  H29 SING N N 68 
0Y2 N6  H30 SING N N 69 
0Y2 N6  H31 SING N N 70 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
0Y2 SMILES           ACDLabs              12.01 "O=C(O)C(N)CCN(CC3OC(n1c2ncnc(N)c2nc1)C(O)C3O)CCc4c5ccccc5sc4" 
0Y2 InChI            InChI                1.03  
"InChI=1S/C24H29N7O5S/c25-15(24(34)35)6-8-30(7-5-13-10-37-17-4-2-1-3-14(13)17)9-16-19(32)20(33)23(36-16)31-12-29-18-21(26)27-11-28-22(18)31/h1-4,10-12,15-16,19-20,23,32-33H,5-9,25H2,(H,34,35)(H2,26,27,28)/t15-,16+,19+,20+,23+/m0/s1" 
0Y2 InChIKey         InChI                1.03  FSMQALLDUCWVDV-PISIQOCNSA-N 
0Y2 SMILES_CANONICAL CACTVS               3.370 "N[C@@H](CCN(CCc1csc2ccccc12)C[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)ncnc45)C(O)=O" 
0Y2 SMILES           CACTVS               3.370 "N[CH](CCN(CCc1csc2ccccc12)C[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45)C(O)=O" 
0Y2 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1ccc2c(c1)c(cs2)CCN(CC[C@@H](C(=O)O)N)C[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O" 
0Y2 SMILES           "OpenEye OEToolkits" 1.7.6 "c1ccc2c(c1)c(cs2)CCN(CCC(C(=O)O)N)CC3C(C(C(O3)n4cnc5c4ncnc5N)O)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
0Y2 "SYSTEMATIC NAME" ACDLabs              12.01 "5'-{[(3S)-3-amino-3-carboxypropyl][2-(1-benzothiophen-3-yl)ethyl]amino}-5'-deoxyadenosine"                                                     
0Y2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S)-4-[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[2-(1-benzothiophen-3-yl)ethyl]amino]-2-azanyl-butanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
0Y2 "Create component" 2012-09-07 RCSB 
0Y2 "Initial release"  2014-02-26 RCSB 
# 
