data_0N2
# 
_chem_comp.id                                    0N2 
_chem_comp.name                                  "(2R,4S,5R,6R)-4-amino-5-hydroxy-6-methyltetrahydro-2H-pyran-2-yl [(2R,3S,5R)-3-hydroxy-5-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)tetrahydrofuran-2-yl]methyl dihydrogen diphosphate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C16 H27 N3 O13 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-03-12 
_chem_comp.pdbx_modified_date                    2012-05-16 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        531.345 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     0N2 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4E33 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
0N2 O41 O41 O 0 1 N N N 27.661 7.248  -7.336 7.336  -3.657 -1.421 O41 0N2 1  
0N2 C41 C41 C 0 1 N N N 26.848 7.382  -6.390 6.769  -2.792 -0.777 C41 0N2 2  
0N2 C51 C51 C 0 1 N N N 26.441 8.610  -5.861 6.619  -2.928 0.624  C51 0N2 3  
0N2 C5A C5A C 0 1 N N N 26.958 9.937  -6.375 7.159  -4.142 1.335  C5A 0N2 4  
0N2 C61 C61 C 0 1 N N N 25.508 8.539  -4.834 5.987  -1.955 1.314  C61 0N2 5  
0N2 N31 N31 N 0 1 N N N 26.297 6.240  -5.935 6.284  -1.694 -1.392 N31 0N2 6  
0N2 C21 C21 C 0 1 N N N 25.452 6.218  -4.881 5.658  -0.739 -0.679 C21 0N2 7  
0N2 O21 O21 O 0 1 N N N 25.030 5.119  -4.478 5.225  0.245  -1.246 O21 0N2 8  
0N2 N11 N11 N 0 1 N N N 25.043 7.378  -4.333 5.504  -0.859 0.652  N11 0N2 9  
0N2 C1X C1X C 0 1 N N R 24.092 7.298  -3.216 4.817  0.196  1.401  C1X 0N2 10 
0N2 O4X O4X O 0 1 N N N 22.935 8.049  -3.578 3.535  0.461  0.808  O4X 0N2 11 
0N2 C2X C2X C 0 1 N N N 24.653 8.076  -2.015 5.632  1.503  1.332  C2X 0N2 12 
0N2 C3X C3X C 0 1 N N S 23.450 8.701  -1.325 4.659  2.524  0.694  C3X 0N2 13 
0N2 O3X O3X O 0 1 N N N 22.868 7.792  -0.370 4.760  3.795  1.338  O3X 0N2 14 
0N2 C4X C4X C 0 1 N N R 22.520 8.902  -2.511 3.279  1.873  0.969  C4X 0N2 15 
0N2 C5X C5X C 0 1 N N N 22.572 10.304 -3.097 2.244  2.353  -0.050 C5X 0N2 16 
0N2 O5X O5X O 0 1 N N N 21.956 11.239 -2.193 0.981  1.748  0.233  O5X 0N2 17 
0N2 P   P   P 0 1 N N N 21.925 12.777 -2.679 -0.341 2.029  -0.643 P   0N2 18 
0N2 O1P O1P O 0 1 N N N 23.348 13.312 -2.638 -0.768 3.574  -0.490 O1P 0N2 19 
0N2 O2P O2P O 0 1 N N N 21.117 12.829 -3.958 -0.063 1.732  -2.066 O2P 0N2 20 
0N2 OPP OPP O 0 1 N N N 21.214 13.405 -1.371 -1.539 1.087  -0.122 OPP 0N2 21 
0N2 P2  P2  P 0 1 N N N 19.798 13.096 -0.649 -2.922 0.578  -0.769 P2  0N2 22 
0N2 O3P O3P O 0 1 N N N 18.607 13.212 -1.543 -3.548 1.683  -1.529 O3P 0N2 23 
0N2 O4P O4P O 0 1 N N N 19.806 11.812 0.166  -2.629 -0.656 -1.760 O4P 0N2 24 
0N2 O1  O1  O 0 1 N N N 19.655 14.325 0.371  -3.918 0.100  0.402  O1  0N2 25 
0N2 C1  C1  C 0 1 N N R 20.781 14.405 1.240  -5.266 -0.310 0.159  C1  0N2 26 
0N2 C2  C2  C 0 1 N N N 20.249 14.896 2.584  -6.127 0.015  1.383  C2  0N2 27 
0N2 C3  C3  C 0 1 N N S 20.024 16.410 2.566  -7.555 -0.481 1.139  C3  0N2 28 
0N2 N3  N3  N 0 1 N N N 18.928 16.817 3.440  -8.370 -0.241 2.337  N3  0N2 29 
0N2 C4  C4  C 0 1 N N R 19.906 16.972 1.142  -7.518 -1.982 0.836  C4  0N2 30 
0N2 O4  O4  O 0 1 N N N 19.682 18.389 1.043  -8.837 -2.441 0.537  O4  0N2 31 
0N2 C5  C5  C 0 1 N N R 21.169 16.630 0.353  -6.603 -2.230 -0.366 C5  0N2 32 
0N2 O5  O5  O 0 1 N N N 21.721 15.381 0.791  -5.299 -1.717 -0.085 O5  0N2 33 
0N2 C6  C6  C 0 1 N N N 22.312 17.623 0.534  -7.175 -1.522 -1.597 C6  0N2 34 
0N2 H1  H1  H 0 1 N N N 26.496 10.757 -5.806 7.631  -4.807 0.612  H1  0N2 35 
0N2 H2  H2  H 0 1 N N N 28.051 9.977  -6.253 7.894  -3.831 2.078  H2  0N2 36 
0N2 H3  H3  H 0 1 N N N 26.704 10.042 -7.440 6.341  -4.666 1.831  H3  0N2 37 
0N2 H4  H4  H 0 1 N N N 25.136 9.463  -4.415 5.863  -2.042 2.383  H4  0N2 38 
0N2 H5  H5  H 0 1 N N N 26.521 5.380  -6.393 6.387  -1.592 -2.351 H5  0N2 39 
0N2 H6  H6  H 0 1 N N N 23.859 6.258  -2.942 4.692  -0.108 2.440  H6  0N2 40 
0N2 H7  H7  H 0 1 N N N 25.177 7.395  -1.328 5.921  1.825  2.333  H7  0N2 41 
0N2 H8  H8  H 0 1 N N N 25.347 8.858  -2.356 6.512  1.370  0.704  H8  0N2 42 
0N2 H9  H9  H 0 1 N N N 23.717 9.665  -0.868 4.839  2.616  -0.377 H9  0N2 43 
0N2 H10 H10 H 0 1 N N N 23.462 7.679  0.363  5.635  4.202  1.270  H10 0N2 44 
0N2 H11 H11 H 0 1 N N N 21.488 8.671  -2.208 2.948  2.090  1.985  H11 0N2 45 
0N2 H12 H12 H 0 1 N N N 23.621 10.592 -3.260 2.150  3.437  0.010  H12 0N2 46 
0N2 H13 H13 H 0 1 N N N 22.035 10.318 -4.057 2.565  2.072  -1.053 H13 0N2 47 
0N2 H14 H14 H 0 1 N N N 23.586 13.646 -3.495 -0.966 3.839  0.418  H14 0N2 48 
0N2 H15 H15 H 0 1 N N N 19.034 11.299 -0.043 -2.218 -1.418 -1.329 H15 0N2 49 
0N2 H16 H16 H 0 1 N N N 21.258 13.422 1.366  -5.655 0.220  -0.710 H16 0N2 50 
0N2 H17 H17 H 0 1 N N N 19.294 14.393 2.798  -5.714 -0.481 2.261  H17 0N2 51 
0N2 H18 H18 H 0 1 N N N 20.978 14.650 3.371  -6.137 1.093  1.545  H18 0N2 52 
0N2 H19 H19 H 0 1 N N N 20.939 16.853 2.985  -7.987 0.053  0.292  H19 0N2 53 
0N2 H20 H20 H 0 1 N N N 19.061 16.421 4.349  -8.404 0.742  2.561  H20 0N2 54 
0N2 H21 H21 H 0 1 N N N 18.911 17.814 3.510  -9.299 -0.618 2.224  H21 0N2 55 
0N2 H23 H23 H 0 1 N N N 19.067 16.453 0.656  -7.133 -2.519 1.703  H23 0N2 56 
0N2 H24 H24 H 0 1 N N N 18.899 18.621 1.529  -8.889 -3.386 0.335  H24 0N2 57 
0N2 H25 H25 H 0 1 N N N 20.914 16.575 -0.716 -6.539 -3.300 -0.560 H25 0N2 58 
0N2 H26 H26 H 0 1 N N N 21.982 18.624 0.220  -6.523 -1.698 -2.452 H26 0N2 59 
0N2 H27 H27 H 0 1 N N N 22.610 17.650 1.593  -8.169 -1.913 -1.811 H27 0N2 60 
0N2 H28 H28 H 0 1 N N N 23.169 17.311 -0.080 -7.239 -0.451 -1.403 H28 0N2 61 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
0N2 O41 C41 DOUB N N 1  
0N2 C41 N31 SING N N 2  
0N2 C41 C51 SING N N 3  
0N2 C5A C51 SING N N 4  
0N2 N31 C21 SING N N 5  
0N2 C51 C61 DOUB N N 6  
0N2 C21 O21 DOUB N N 7  
0N2 C21 N11 SING N N 8  
0N2 C61 N11 SING N N 9  
0N2 N11 C1X SING N N 10 
0N2 O2P P   DOUB N N 11 
0N2 O4X C1X SING N N 12 
0N2 O4X C4X SING N N 13 
0N2 C1X C2X SING N N 14 
0N2 C5X C4X SING N N 15 
0N2 C5X O5X SING N N 16 
0N2 P   O1P SING N N 17 
0N2 P   O5X SING N N 18 
0N2 P   OPP SING N N 19 
0N2 C4X C3X SING N N 20 
0N2 C2X C3X SING N N 21 
0N2 O3P P2  DOUB N N 22 
0N2 OPP P2  SING N N 23 
0N2 C3X O3X SING N N 24 
0N2 P2  O4P SING N N 25 
0N2 P2  O1  SING N N 26 
0N2 C5  C6  SING N N 27 
0N2 C5  O5  SING N N 28 
0N2 C5  C4  SING N N 29 
0N2 O1  C1  SING N N 30 
0N2 O5  C1  SING N N 31 
0N2 O4  C4  SING N N 32 
0N2 C4  C3  SING N N 33 
0N2 C1  C2  SING N N 34 
0N2 C3  C2  SING N N 35 
0N2 C3  N3  SING N N 36 
0N2 C5A H1  SING N N 37 
0N2 C5A H2  SING N N 38 
0N2 C5A H3  SING N N 39 
0N2 C61 H4  SING N N 40 
0N2 N31 H5  SING N N 41 
0N2 C1X H6  SING N N 42 
0N2 C2X H7  SING N N 43 
0N2 C2X H8  SING N N 44 
0N2 C3X H9  SING N N 45 
0N2 O3X H10 SING N N 46 
0N2 C4X H11 SING N N 47 
0N2 C5X H12 SING N N 48 
0N2 C5X H13 SING N N 49 
0N2 O1P H14 SING N N 50 
0N2 O4P H15 SING N N 51 
0N2 C1  H16 SING N N 52 
0N2 C2  H17 SING N N 53 
0N2 C2  H18 SING N N 54 
0N2 C3  H19 SING N N 55 
0N2 N3  H20 SING N N 56 
0N2 N3  H21 SING N N 57 
0N2 C4  H23 SING N N 58 
0N2 O4  H24 SING N N 59 
0N2 C5  H25 SING N N 60 
0N2 C6  H26 SING N N 61 
0N2 C6  H27 SING N N 62 
0N2 C6  H28 SING N N 63 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
0N2 SMILES           ACDLabs              12.01 "O=C1C(=CN(C(=O)N1)C2OC(C(O)C2)COP(=O)(OP(=O)(OC3OC(C(O)C(N)C3)C)O)O)C" 
0N2 InChI            InChI                1.03  
"InChI=1S/C16H27N3O13P2/c1-7-5-19(16(23)18-15(7)22)12-4-10(20)11(30-12)6-28-33(24,25)32-34(26,27)31-13-3-9(17)14(21)8(2)29-13/h5,8-14,20-21H,3-4,6,17H2,1-2H3,(H,24,25)(H,26,27)(H,18,22,23)/t8-,9+,10+,11-,12-,13-,14+/m1/s1" 
0N2 InChIKey         InChI                1.03  CEQVCLWWGAYCPR-RIBQXPMZSA-N 
0N2 SMILES_CANONICAL CACTVS               3.370 "C[C@H]1O[C@@H](C[C@H](N)[C@H]1O)O[P](O)(=O)O[P](O)(=O)OC[C@H]2O[C@H](C[C@@H]2O)N3C=C(C)C(=O)NC3=O" 
0N2 SMILES           CACTVS               3.370 "C[CH]1O[CH](C[CH](N)[CH]1O)O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH](C[CH]2O)N3C=C(C)C(=O)NC3=O" 
0N2 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@@H]1[C@@H]([C@H](C[C@H](O1)OP(=O)(O)OP(=O)(O)OC[C@@H]2[C@H](C[C@@H](O2)N3C=C(C(=O)NC3=O)C)O)N)O" 
0N2 SMILES           "OpenEye OEToolkits" 1.7.6 "CC1C(C(CC(O1)OP(=O)(O)OP(=O)(O)OCC2C(CC(O2)N3C=C(C(=O)NC3=O)C)O)N)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
0N2 "SYSTEMATIC NAME" ACDLabs              12.01 
"(2R,4S,5R,6R)-4-amino-5-hydroxy-6-methyltetrahydro-2H-pyran-2-yl [(2R,3S,5R)-3-hydroxy-5-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)tetrahydrofuran-2-yl]methyl dihydrogen diphosphate (non-preferred name)" 
0N2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,4S,5R,6R)-4-azanyl-6-methyl-5-oxidanyl-oxan-2-yl] [[(2R,3S,5R)-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
0N2 "Create component" 2012-03-12 RCSB 
0N2 "Modify atom id"   2012-05-16 RCSB 
# 
