data_YV1
#

_chem_comp.id                                   YV1
_chem_comp.name                                 "(3,5-dichlorophenyl)methyl (3aR,8aS)-2-(1H-benzotriazole-5-carbonyl)octahydropyrrolo[3,4-d]azepine-6(1H)-carboxylate"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C23 H23 Cl2 N5 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-04-01
_chem_comp.pdbx_modified_date                   2022-04-08
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       488.366
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    YV1
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5S9M
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YV1  C02   C1   C   0  1  N  N  N  -15.221  10.033  48.501  -0.566   3.612  -0.855  C02   YV1   1  
YV1  C04   C2   C   0  1  N  N  N  -13.175  10.035  46.913   1.104   3.204   0.969  C04   YV1   2  
YV1  C05   C3   C   0  1  N  N  N  -12.174   9.937  48.022  -0.054   3.350   1.962  C05   YV1   3  
YV1  C06   C4   C   0  1  N  N  R  -13.430  11.796  49.069  -2.299   2.860   0.885  C06   YV1   4  
YV1  C07   C5   C   0  1  N  N  S  -12.126  11.326  48.624  -1.126   2.311   1.800  C07   YV1   5  
YV1  N09   N1   N   0  1  N  N  N  -11.707  12.493  50.582  -2.177   0.472   0.741  N09   YV1   6  
YV1  C10   C6   C   0  1  N  N  N  -13.041  12.911  50.069  -3.172   1.549   0.972  C10   YV1   7  
YV1  C13   C7   C   0  1  N  N  N  -14.638   8.062  47.207   1.261   2.032  -1.178  C13   YV1   8  
YV1  O14   O1   O   0  1  N  N  N  -15.716   7.579  47.466   0.902   1.874  -2.328  O14   YV1   9  
YV1  C16   C8   C   0  1  N  N  N  -14.006   6.055  45.880   3.011   0.474  -1.629  C16   YV1  10  
YV1  C17   C9   C   0  1  Y  N  N  -13.036   5.608  44.764   4.052  -0.327  -0.889  C17   YV1  11  
YV1  C18   C10  C   0  1  Y  N  N  -12.571   4.267  44.687   3.702  -1.517  -0.278  C18   YV1  12  
YV1  C19   C11  C   0  1  Y  N  N  -11.704   3.898  43.649   4.657  -2.252   0.402  C19   YV1  13  
YV1  C20   C12  C   0  1  Y  N  N  -11.263   4.802  42.698   5.961  -1.796   0.471  C20   YV1  14  
YV1  C21   C13  C   0  1  Y  N  N  -11.783   6.092  42.796   6.310  -0.605  -0.141  C21   YV1  15  
YV1  C22   C14  C   0  1  Y  N  N  -12.667   6.509  43.789   5.356   0.126  -0.825  C22   YV1  16  
YV1  C25   C15  C   0  1  N  N  N  -11.073  13.137  51.659  -2.431  -0.733   0.194  C25   YV1  17  
YV1  C26   C16  C   0  1  Y  N  N   -9.740  12.740  52.269  -3.821  -1.125  -0.117  C26   YV1  18  
YV1  C28   C17  C   0  1  Y  N  N   -9.536  11.393  52.647  -4.071  -2.082  -1.110  C28   YV1  19  
YV1  N01   N2   N   0  1  N  N  N  -14.402   9.514  47.421   0.621   2.917  -0.388  N01   YV1  20  
YV1  C03   C18  C   0  1  N  N  N  -14.375  10.721  49.594  -1.806   2.811  -0.557  C03   YV1  21  
YV1  C08   C19  C   0  1  N  N  N  -11.186  11.372  49.825  -0.854   0.951   1.215  C08   YV1  22  
YV1  O15   O2   O   0  1  N  N  N  -13.746   7.372  46.351   2.299   1.324  -0.693  O15   YV1  23  
YV1  CL23  CL1  CL  0  0  N  N  N  -11.272   7.249  41.607   7.947  -0.033  -0.056  CL23  YV1  24  
YV1  CL24  CL2  CL  0  0  N  N  N  -11.014   2.311  43.528   4.218  -3.746   1.170  CL24  YV1  25  
YV1  O27   O3   O   0  1  N  N  N  -11.700  14.061  52.148  -1.516  -1.497  -0.044  O27   YV1  26  
YV1  C29   C20  C   0  1  Y  N  N   -8.361  10.982  53.280  -5.349  -2.453  -1.407  C29   YV1  27  
YV1  C30   C21  C   0  1  Y  N  N   -8.772  13.715  52.496  -4.875  -0.547   0.580  C30   YV1  28  
YV1  C31   C22  C   0  1  Y  N  N   -7.551  13.293  53.130  -6.187  -0.923   0.281  C31   YV1  29  
YV1  C32   C23  C   0  1  Y  N  N   -7.359  11.963  53.497  -6.419  -1.881  -0.724  C32   YV1  30  
YV1  N33   N3   N   0  1  Y  N  N   -6.146  11.845  54.044  -7.781  -2.040  -0.790  N33   YV1  31  
YV1  N34   N4   N   0  1  Y  N  N   -5.561  13.093  54.062  -8.335  -1.175   0.164  N34   YV1  32  
YV1  N35   N5   N   0  1  Y  N  N   -6.448  13.980  53.485  -7.392  -0.547   0.773  N35   YV1  33  
YV1  H37   H1   H   0  1  N  N  N  -15.930  10.766  48.088  -0.634   4.579  -0.357  H37   YV1  34  
YV1  H36   H2   H   0  1  N  N  N  -15.778   9.200  48.955  -0.489   3.767  -1.931  H36   YV1  35  
YV1  H41   H3   H   0  1  N  N  N  -12.841   9.443  46.048   1.678   4.130   0.953  H41   YV1  36  
YV1  H40   H4   H   0  1  N  N  N  -13.305  11.085  46.611   1.752   2.390   1.295  H40   YV1  37  
YV1  H42   H5   H   0  1  N  N  N  -12.498   9.201  48.772   0.345   3.283   2.974  H42   YV1  38  
YV1  H43   H6   H   0  1  N  N  N  -11.187   9.651  47.629  -0.502   4.335   1.833  H43   YV1  39  
YV1  H11   H7   H   0  1  N  N  N  -13.928  12.284  48.218  -2.770   3.788   1.207  H11   YV1  40  
YV1  H12   H8   H   0  1  N  N  N  -11.738  12.017  47.861  -1.560   2.141   2.786  H12   YV1  41  
YV1  H47   H9   H   0  1  N  N  N  -12.976  13.885  49.562  -3.623   1.451   1.959  H47   YV1  42  
YV1  H46   H10  H   0  1  N  N  N  -13.772  12.973  50.888  -3.936   1.541   0.195  H46   YV1  43  
YV1  H48   H11  H   0  1  N  N  N  -13.914   5.356  46.725   3.498   1.092  -2.384  H48   YV1  44  
YV1  H49   H12  H   0  1  N  N  N  -15.033   6.020  45.486   2.308  -0.204  -2.112  H49   YV1  45  
YV1  H50   H13  H   0  1  N  N  N  -12.883   3.539  45.421   2.684  -1.872  -0.332  H50   YV1  46  
YV1  H51   H14  H   0  1  N  N  N  -10.559   4.525  41.927   6.707  -2.369   1.002  H51   YV1  47  
YV1  H52   H15  H   0  1  N  N  N  -13.055   7.517  43.794   5.629   1.054  -1.306  H52   YV1  48  
YV1  H53   H16  H   0  1  N  N  N  -10.307  10.665  52.441  -3.245  -2.530  -1.644  H53   YV1  49  
YV1  H38   H17  H   0  1  N  N  N  -15.060  11.187  50.318  -2.607   3.172  -1.202  H38   YV1  50  
YV1  H39   H18  H   0  1  N  N  N  -13.774   9.951  50.101  -1.610   1.771  -0.814  H39   YV1  51  
YV1  H44   H19  H   0  1  N  N  N  -11.237  10.440  50.407  -0.157   1.029   0.381  H44   YV1  52  
YV1  H45   H20  H   0  1  N  N  N  -10.147  11.552  49.511  -0.460   0.281   1.979  H45   YV1  53  
YV1  H54   H21  H   0  1  N  N  N   -8.220   9.958  53.592  -5.531  -3.191  -2.174  H54   YV1  54  
YV1  H55   H22  H   0  1  N  N  N   -8.931  14.744  52.209  -4.681   0.187   1.348  H55   YV1  55  
YV1  H56   H23  H   0  1  N  N  N   -5.734  10.999  54.382  -8.266  -2.635  -1.384  H56   YV1  56  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YV1  N01  C02   SING  N  N   1  
YV1  C02  C03   SING  N  N   2  
YV1  N01  C04   SING  N  N   3  
YV1  C04  C05   SING  N  N   4  
YV1  C03  C06   SING  N  N   5  
YV1  C05  C07   SING  N  N   6  
YV1  C06  C07   SING  N  N   7  
YV1  C07  C08   SING  N  N   8  
YV1  C08  N09   SING  N  N   9  
YV1  C06  C10   SING  N  N  10  
YV1  N09  C10   SING  N  N  11  
YV1  N01  C13   SING  N  N  12  
YV1  C13  O14   DOUB  N  N  13  
YV1  C13  O15   SING  N  N  14  
YV1  O15  C16   SING  N  N  15  
YV1  C16  C17   SING  N  N  16  
YV1  C17  C18   DOUB  Y  N  17  
YV1  C18  C19   SING  Y  N  18  
YV1  C19  C20   DOUB  Y  N  19  
YV1  C20  C21   SING  Y  N  20  
YV1  C17  C22   SING  Y  N  21  
YV1  C21  C22   DOUB  Y  N  22  
YV1  C21  CL23  SING  N  N  23  
YV1  C19  CL24  SING  N  N  24  
YV1  N09  C25   SING  N  N  25  
YV1  C25  C26   SING  N  N  26  
YV1  C25  O27   DOUB  N  N  27  
YV1  C26  C28   DOUB  Y  N  28  
YV1  C28  C29   SING  Y  N  29  
YV1  C26  C30   SING  Y  N  30  
YV1  C30  C31   DOUB  Y  N  31  
YV1  C29  C32   DOUB  Y  N  32  
YV1  C31  C32   SING  Y  N  33  
YV1  C32  N33   SING  Y  N  34  
YV1  N33  N34   SING  Y  N  35  
YV1  C31  N35   SING  Y  N  36  
YV1  N34  N35   DOUB  Y  N  37  
YV1  C02  H37   SING  N  N  38  
YV1  C02  H36   SING  N  N  39  
YV1  C04  H41   SING  N  N  40  
YV1  C04  H40   SING  N  N  41  
YV1  C05  H42   SING  N  N  42  
YV1  C05  H43   SING  N  N  43  
YV1  C06  H11   SING  N  N  44  
YV1  C07  H12   SING  N  N  45  
YV1  C10  H47   SING  N  N  46  
YV1  C10  H46   SING  N  N  47  
YV1  C16  H48   SING  N  N  48  
YV1  C16  H49   SING  N  N  49  
YV1  C18  H50   SING  N  N  50  
YV1  C20  H51   SING  N  N  51  
YV1  C22  H52   SING  N  N  52  
YV1  C28  H53   SING  N  N  53  
YV1  C03  H38   SING  N  N  54  
YV1  C03  H39   SING  N  N  55  
YV1  C08  H44   SING  N  N  56  
YV1  C08  H45   SING  N  N  57  
YV1  C29  H54   SING  N  N  58  
YV1  C30  H55   SING  N  N  59  
YV1  N33  H56   SING  N  N  60  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YV1  SMILES            ACDLabs               12.01  "Clc1cc(cc(Cl)c1)COC(=O)N1CCC2CN(CC2CC1)C(=O)c1cc2nn[NH]c2cc1"  
YV1  InChI             InChI                 1.03   "InChI=1S/C23H23Cl2N5O3/c24-18-7-14(8-19(25)10-18)13-33-23(32)29-5-3-16-11-30(12-17(16)4-6-29)22(31)15-1-2-20-21(9-15)27-28-26-20/h1-2,7-10,16-17H,3-6,11-13H2,(H,26,27,28)"  
YV1  InChIKey          InChI                 1.03   ZNRUXBLWISFAAT-UHFFFAOYSA-N  
YV1  SMILES_CANONICAL  CACTVS                3.385  "Clc1cc(Cl)cc(COC(=O)N2CC[C@@H]3CN(C[C@@H]3CC2)C(=O)c4ccc5[nH]nnc5c4)c1"  
YV1  SMILES            CACTVS                3.385  "Clc1cc(Cl)cc(COC(=O)N2CC[CH]3CN(C[CH]3CC2)C(=O)c4ccc5[nH]nnc5c4)c1"  
YV1  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cc2c(cc1C(=O)N3C[C@H]4CCN(CC[C@H]4C3)C(=O)OCc5cc(cc(c5)Cl)Cl)nn[nH]2"  
YV1  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cc2c(cc1C(=O)N3CC4CCN(CCC4C3)C(=O)OCc5cc(cc(c5)Cl)Cl)nn[nH]2"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
YV1  "SYSTEMATIC NAME"  ACDLabs               12.01  "(3,5-dichlorophenyl)methyl (3aR,8aS)-2-(1H-benzotriazole-5-carbonyl)octahydropyrrolo[3,4-d]azepine-6(1H)-carboxylate"  
YV1  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "[3,5-bis(chloranyl)phenyl]methyl (3~{a}~{R},8~{a}~{S})-2-(1~{H}-benzotriazol-5-ylcarbonyl)-1,3,3~{a},4,5,7,8,8~{a}-octahydropyrrolo[3,4-d]azepine-6-carboxylate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YV1  "Create component"  2021-04-01  RCSB  
YV1  "Initial release"   2022-04-13  RCSB  
##
