data_YP1
#

_chem_comp.id                                   YP1
_chem_comp.name                                 "2-chloro-6-[(2R)-2-hydroxy-3-{[2-methyl-1-(naphthalen-2-yl)propan-2-yl]amino}propoxy]benzonitrile"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C24 H25 Cl N2 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-03-18
_chem_comp.pdbx_modified_date                   2021-06-11
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       408.921
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    YP1
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       ?
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YP1  C1   C1   C   0  1  N  N  N  ?  ?  ?   2.523   0.311  -1.615  C1   YP1   1  
YP1  O2   O1   O   0  1  N  N  N  ?  ?  ?  -1.555   1.993  -0.745  O2   YP1   2  
YP1  C2   C2   C   0  1  N  N  N  ?  ?  ?   2.376   0.550  -0.111  C2   YP1   3  
YP1  C14  C3   C   0  1  Y  N  N  ?  ?  ?   5.430   1.222  -1.153  C14  YP1   4  
YP1  C3   C4   C   0  1  N  N  N  ?  ?  ?   2.537  -0.776   0.635  C3   YP1   5  
YP1  C4   C5   C   0  1  N  N  N  ?  ?  ?   3.453   1.532   0.357  C4   YP1   6  
YP1  C5   C6   C   0  1  Y  N  N  ?  ?  ?   4.816   0.956   0.070  C5   YP1   7  
YP1  C6   C7   C   0  1  Y  N  N  ?  ?  ?   5.429   0.184   1.009  C6   YP1   8  
YP1  C7   C8   C   0  1  Y  N  N  ?  ?  ?   6.700  -0.354   0.745  C7   YP1   9  
YP1  C8   C9   C   0  1  Y  N  N  ?  ?  ?   7.364  -1.155   1.689  C8   YP1  10  
YP1  C10  C10  C   0  1  Y  N  N  ?  ?  ?   9.208  -1.392   0.176  C10  YP1  11  
YP1  C13  C11  C   0  1  Y  N  N  ?  ?  ?   6.660   0.717  -1.443  C13  YP1  12  
YP1  C11  C12  C   0  1  Y  N  N  ?  ?  ?   8.596  -0.621  -0.762  C11  YP1  13  
YP1  C12  C13  C   0  1  Y  N  N  ?  ?  ?   7.324  -0.083  -0.499  C12  YP1  14  
YP1  C15  C14  C   0  1  N  N  N  ?  ?  ?  -0.013   0.194  -0.268  C15  YP1  15  
YP1  CL1  CL1  CL  0  0  N  N  N  ?  ?  ?  -8.816  -0.235   0.420  CL1  YP1  16  
YP1  N1   N1   N   0  1  N  N  N  ?  ?  ?  -6.399   2.319   1.327  N1   YP1  17  
YP1  O1   O2   O   0  1  N  N  N  ?  ?  ?  -3.748   0.336   0.094  O1   YP1  18  
YP1  N2   N2   N   0  1  N  N  N  ?  ?  ?   1.048   1.111   0.169  N2   YP1  19  
YP1  C9   C15  C   0  1  Y  N  N  ?  ?  ?   8.594  -1.658   1.399  C9   YP1  20  
YP1  C16  C16  C   0  1  N  N  R  ?  ?  ?  -1.379   0.811   0.039  C16  YP1  21  
YP1  C17  C17  C   0  1  N  N  N  ?  ?  ?  -2.481  -0.195  -0.300  C17  YP1  22  
YP1  C18  C18  C   0  1  Y  N  N  ?  ?  ?  -4.839  -0.437  -0.138  C18  YP1  23  
YP1  C19  C19  C   0  1  Y  N  N  ?  ?  ?  -6.115   0.019   0.222  C19  YP1  24  
YP1  C20  C20  C   0  1  Y  N  N  ?  ?  ?  -7.231  -0.788  -0.022  C20  YP1  25  
YP1  C21  C21  C   0  1  Y  N  N  ?  ?  ?  -7.070  -2.023  -0.616  C21  YP1  26  
YP1  C22  C22  C   0  1  Y  N  N  ?  ?  ?  -5.807  -2.468  -0.970  C22  YP1  27  
YP1  C23  C23  C   0  1  Y  N  N  ?  ?  ?  -4.697  -1.679  -0.739  C23  YP1  28  
YP1  C24  C24  C   0  1  N  N  N  ?  ?  ?  -6.273   1.301   0.838  C24  YP1  29  
YP1  H1   H1   H   0  1  N  N  N  ?  ?  ?   3.509  -0.105  -1.822  H1   YP1  30  
YP1  H2   H2   H   0  1  N  N  N  ?  ?  ?   1.756  -0.388  -1.948  H2   YP1  31  
YP1  H3   H3   H   0  1  N  N  N  ?  ?  ?   2.408   1.256  -2.146  H3   YP1  32  
YP1  H4   H4   H   0  1  N  N  N  ?  ?  ?  -1.519   1.841  -1.699  H4   YP1  33  
YP1  H5   H5   H   0  1  N  N  N  ?  ?  ?   4.919   1.833  -1.882  H5   YP1  34  
YP1  H6   H6   H   0  1  N  N  N  ?  ?  ?   3.523  -1.192   0.427  H6   YP1  35  
YP1  H7   H7   H   0  1  N  N  N  ?  ?  ?   2.433  -0.606   1.706  H7   YP1  36  
YP1  H8   H8   H   0  1  N  N  N  ?  ?  ?   1.770  -1.476   0.301  H8   YP1  37  
YP1  H9   H9   H   0  1  N  N  N  ?  ?  ?   3.338   2.477  -0.175  H9   YP1  38  
YP1  H10  H10  H   0  1  N  N  N  ?  ?  ?   3.349   1.702   1.428  H10  YP1  39  
YP1  H11  H11  H   0  1  N  N  N  ?  ?  ?   4.941  -0.013   1.952  H11  YP1  40  
YP1  H12  H12  H   0  1  N  N  N  ?  ?  ?   6.900  -1.369   2.641  H12  YP1  41  
YP1  H13  H13  H   0  1  N  N  N  ?  ?  ?  10.185  -1.804  -0.029  H13  YP1  42  
YP1  H14  H14  H   0  1  N  N  N  ?  ?  ?   7.121   0.927  -2.397  H14  YP1  43  
YP1  H15  H15  H   0  1  N  N  N  ?  ?  ?   9.084  -0.423  -1.705  H15  YP1  44  
YP1  H16  H16  H   0  1  N  N  N  ?  ?  ?   0.074   0.021  -1.341  H16  YP1  45  
YP1  H17  H17  H   0  1  N  N  N  ?  ?  ?   0.085  -0.754   0.262  H17  YP1  46  
YP1  H18  H18  H   0  1  N  N  N  ?  ?  ?   0.941   2.018  -0.260  H18  YP1  47  
YP1  H20  H20  H   0  1  N  N  N  ?  ?  ?   9.103  -2.273   2.127  H20  YP1  48  
YP1  H21  H21  H   0  1  N  N  N  ?  ?  ?  -1.433   1.066   1.097  H21  YP1  49  
YP1  H22  H22  H   0  1  N  N  N  ?  ?  ?  -2.297  -1.129   0.231  H22  YP1  50  
YP1  H23  H23  H   0  1  N  N  N  ?  ?  ?  -2.484  -0.382  -1.374  H23  YP1  51  
YP1  H24  H24  H   0  1  N  N  N  ?  ?  ?  -7.932  -2.645  -0.804  H24  YP1  52  
YP1  H25  H25  H   0  1  N  N  N  ?  ?  ?  -5.690  -3.436  -1.434  H25  YP1  53  
YP1  H26  H26  H   0  1  N  N  N  ?  ?  ?  -3.716  -2.034  -1.018  H26  YP1  54  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YP1  O2   C16  SING  N  N   1  
YP1  C17  C16  SING  N  N   2  
YP1  C17  O1   SING  N  N   3  
YP1  C16  C15  SING  N  N   4  
YP1  C23  C22  DOUB  Y  N   5  
YP1  C23  C18  SING  Y  N   6  
YP1  C22  C21  SING  Y  N   7  
YP1  C15  N2   SING  N  N   8  
YP1  O1   C18  SING  N  N   9  
YP1  N2   C2   SING  N  N  10  
YP1  C18  C19  DOUB  Y  N  11  
YP1  C21  C20  DOUB  Y  N  12  
YP1  C1   C2   SING  N  N  13  
YP1  C2   C4   SING  N  N  14  
YP1  C2   C3   SING  N  N  15  
YP1  C19  C20  SING  Y  N  16  
YP1  C19  C24  SING  N  N  17  
YP1  C20  CL1  SING  N  N  18  
YP1  C4   C5   SING  N  N  19  
YP1  C24  N1   TRIP  N  N  20  
YP1  C5   C14  DOUB  Y  N  21  
YP1  C5   C6   SING  Y  N  22  
YP1  C14  C13  SING  Y  N  23  
YP1  C6   C7   DOUB  Y  N  24  
YP1  C13  C12  DOUB  Y  N  25  
YP1  C7   C12  SING  Y  N  26  
YP1  C7   C8   SING  Y  N  27  
YP1  C12  C11  SING  Y  N  28  
YP1  C8   C9   DOUB  Y  N  29  
YP1  C11  C10  DOUB  Y  N  30  
YP1  C9   C10  SING  Y  N  31  
YP1  C1   H1   SING  N  N  32  
YP1  C1   H2   SING  N  N  33  
YP1  C1   H3   SING  N  N  34  
YP1  O2   H4   SING  N  N  35  
YP1  C14  H5   SING  N  N  36  
YP1  C3   H6   SING  N  N  37  
YP1  C3   H7   SING  N  N  38  
YP1  C3   H8   SING  N  N  39  
YP1  C4   H9   SING  N  N  40  
YP1  C4   H10  SING  N  N  41  
YP1  C6   H11  SING  N  N  42  
YP1  C8   H12  SING  N  N  43  
YP1  C10  H13  SING  N  N  44  
YP1  C13  H14  SING  N  N  45  
YP1  C11  H15  SING  N  N  46  
YP1  C15  H16  SING  N  N  47  
YP1  C15  H17  SING  N  N  48  
YP1  N2   H18  SING  N  N  49  
YP1  C9   H20  SING  N  N  50  
YP1  C16  H21  SING  N  N  51  
YP1  C17  H22  SING  N  N  52  
YP1  C17  H23  SING  N  N  53  
YP1  C21  H24  SING  N  N  54  
YP1  C22  H25  SING  N  N  55  
YP1  C23  H26  SING  N  N  56  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YP1  SMILES            ACDLabs               12.01  "N#Cc1c(cccc1Cl)OCC(O)CNC(C)(C)Cc1cc2ccccc2cc1"  
YP1  InChI             InChI                 1.03   "InChI=1S/C24H25ClN2O2/c1-24(2,13-17-10-11-18-6-3-4-7-19(18)12-17)27-15-20(28)16-29-23-9-5-8-22(25)21(23)14-26/h3-12,20,27-28H,13,15-16H2,1-2H3/t20-/m1/s1"  
YP1  InChIKey          InChI                 1.03   PZUJQWHTIRWCID-HXUWFJFHSA-N  
YP1  SMILES_CANONICAL  CACTVS                3.385  "CC(C)(Cc1ccc2ccccc2c1)NC[C@@H](O)COc3cccc(Cl)c3C#N"  
YP1  SMILES            CACTVS                3.385  "CC(C)(Cc1ccc2ccccc2c1)NC[CH](O)COc3cccc(Cl)c3C#N"  
YP1  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC(C)(Cc1ccc2ccccc2c1)NC[C@H](COc3cccc(c3C#N)Cl)O"  
YP1  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C)(Cc1ccc2ccccc2c1)NCC(COc3cccc(c3C#N)Cl)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
YP1  "SYSTEMATIC NAME"  ACDLabs               12.01  "2-chloro-6-[(2R)-2-hydroxy-3-{[2-methyl-1-(naphthalen-2-yl)propan-2-yl]amino}propoxy]benzonitrile"  
YP1  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "2-chloranyl-6-[(2~{R})-3-[(2-methyl-1-naphthalen-2-yl-propan-2-yl)amino]-2-oxidanyl-propoxy]benzenecarbonitrile"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YP1  "Create component"  2021-03-18  RCSB  
YP1  "Initial release"   2021-06-16  RCSB  
##
