data_XM1
# 
_chem_comp.id                                    XM1 
_chem_comp.name                                  "(2S)-2-(4-chlorobenzyl)-3-oxo-3-[4-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)piperazin-1-yl]propan-1-amine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H23 Cl N6 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2010-08-10 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        398.889 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XM1 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3OCB 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XM1 C1   C1   C  0 1 Y N N 14.535 -1.991 15.882 4.227  -0.102 -0.100 C1   XM1 1  
XM1 CL1  CL1  CL 0 0 N N N 8.406  4.074  14.396 -7.142 2.549  0.517  CL1  XM1 2  
XM1 C2   C2   C  0 1 Y N N 15.667 -1.218 15.529 4.565  1.259  -0.109 C2   XM1 3  
XM1 C3   C3   C  0 1 Y N N 15.866 0.201  15.512 3.912  2.487  -0.559 C3   XM1 4  
XM1 C4   C4   C  0 1 Y N N 17.171 0.305  15.077 4.756  3.496  -0.292 C4   XM1 5  
XM1 N5   N5   N  0 1 N N N 12.234 -0.408 21.274 -1.995 -2.655 2.289  N5   XM1 6  
XM1 N6   N6   N  0 1 Y N N 17.746 -0.953 14.840 5.896  3.007  0.293  N6   XM1 7  
XM1 C7   C7   C  0 1 Y N N 16.818 -1.894 15.119 5.811  1.648  0.419  C7   XM1 8  
XM1 N8   N8   N  0 1 Y N N 14.637 -3.335 15.805 5.098  -0.966 0.412  N8   XM1 9  
XM1 C9   C9   C  0 1 Y N N 15.809 -3.858 15.391 6.257  -0.558 0.897  C9   XM1 10 
XM1 N10  N10  N  0 1 Y N N 16.938 -3.224 15.032 6.618  0.707  0.905  N10  XM1 11 
XM1 N11  N11  N  0 1 N N N 13.370 -1.376 16.311 3.014  -0.534 -0.607 N11  XM1 12 
XM1 C12  C12  C  0 1 N N N 12.278 -2.266 16.766 2.884  -1.993 -0.490 C12  XM1 13 
XM1 C13  C13  C  0 1 N N N 10.920 -1.591 17.079 1.617  -2.450 -1.220 C13  XM1 14 
XM1 N14  N14  N  0 1 N N N 11.058 -0.367 17.897 0.476  -1.681 -0.702 N14  XM1 15 
XM1 C15  C15  C  0 1 N N N 12.091 0.569  17.401 0.587  -0.215 -0.660 C15  XM1 16 
XM1 C16  C16  C  0 1 N N N 13.442 -0.143 17.129 1.894  0.154  0.049  C16  XM1 17 
XM1 C17  C17  C  0 1 N N N 10.412 -0.200 19.082 -0.642 -2.303 -0.278 C17  XM1 18 
XM1 O18  O18  O  0 1 N N N 9.546  -0.995 19.462 -0.682 -3.514 -0.233 O18  XM1 19 
XM1 C19  C19  C  0 1 N N S 10.656 1.061  19.954 -1.842 -1.493 0.139  C19  XM1 20 
XM1 C20  C20  C  0 1 N N N 9.413  1.984  19.987 -2.638 -1.083 -1.102 C20  XM1 21 
XM1 C21  C21  C  0 1 N N N 11.265 0.711  21.329 -2.730 -2.334 1.059  C21  XM1 22 
XM1 C22  C22  C  0 1 Y N N 9.145  2.514  18.591 -3.768 -0.172 -0.696 C22  XM1 23 
XM1 C23  C23  C  0 1 Y N N 8.318  1.779  17.709 -3.571 1.196  -0.654 C23  XM1 24 
XM1 C24  C24  C  0 1 Y N N 8.087  2.269  16.405 -4.607 2.032  -0.282 C24  XM1 25 
XM1 C25  C25  C  0 1 Y N N 8.690  3.484  15.995 -5.841 1.500  0.049  C25  XM1 26 
XM1 C26  C26  C  0 1 Y N N 9.524  4.216  16.874 -6.037 0.131  0.006  C26  XM1 27 
XM1 C27  C27  C  0 1 Y N N 9.752  3.722  18.176 -5.002 -0.704 -0.371 C27  XM1 28 
XM1 H3   H3   H  0 1 N N N 15.173 0.987  15.773 2.938  2.566  -1.018 H3   XM1 29 
XM1 H4   H4   H  0 1 N N N 17.688 1.242  14.936 4.566  4.538  -0.506 H4   XM1 30 
XM1 HN5  HN5  H  0 1 N N N 12.591 -0.586 22.191 -1.705 -1.815 2.768  HN5  XM1 31 
XM1 HN5A HN5A H  0 0 N N N 11.777 -1.228 20.930 -2.545 -3.245 2.896  HN5A XM1 32 
XM1 H9   H9   H  0 1 N N N 15.845 -4.936 15.341 6.936  -1.293 1.304  H9   XM1 33 
XM1 H12  H12  H  0 1 N N N 12.100 -2.998 15.964 3.755  -2.473 -0.937 H12  XM1 34 
XM1 H12A H12A H  0 0 N N N 12.620 -2.753 17.691 2.817  -2.269 0.563  H12A XM1 35 
XM1 H13  H13  H  0 1 N N N 10.442 -1.318 16.127 1.726  -2.269 -2.290 H13  XM1 36 
XM1 H13A H13A H  0 0 N N N 10.297 -2.309 17.633 1.454  -3.513 -1.041 H13A XM1 37 
XM1 H15  H15  H  0 1 N N N 11.736 1.018  16.462 0.596  0.181  -1.675 H15  XM1 38 
XM1 H15A H15A H  0 0 N N N 12.252 1.348  18.160 -0.260 0.201  -0.112 H15A XM1 39 
XM1 H16  H16  H  0 1 N N N 13.870 -0.420 18.104 1.841  -0.152 1.094  H16  XM1 40 
XM1 H16A H16A H  0 0 N N N 14.087 0.569  16.594 2.047  1.232  -0.007 H16A XM1 41 
XM1 H19  H19  H  0 1 N N N 11.434 1.671  19.472 -1.512 -0.600 0.670  H19  XM1 42 
XM1 H20  H20  H  0 1 N N N 8.540  1.413  20.337 -1.981 -0.560 -1.797 H20  XM1 43 
XM1 H20A H20A H  0 0 N N N 9.598  2.826  20.671 -3.043 -1.972 -1.584 H20A XM1 44 
XM1 H21  H21  H  0 1 N N N 10.446 0.423  22.004 -3.009 -3.257 0.551  H21  XM1 45 
XM1 H21A H21A H  0 0 N N N 11.789 1.601  21.709 -3.629 -1.771 1.310  H21A XM1 46 
XM1 H23  H23  H  0 1 N N N 7.867  0.852  18.030 -2.608 1.611  -0.911 H23  XM1 47 
XM1 H24  H24  H  0 1 N N N 7.454  1.720  15.723 -4.453 3.100  -0.248 H24  XM1 48 
XM1 H26  H26  H  0 1 N N N 9.980  5.141  16.552 -6.999 -0.285 0.264  H26  XM1 49 
XM1 H27  H27  H  0 1 N N N 10.390 4.267  18.856 -5.154 -1.773 -0.405 H27  XM1 50 
XM1 HN6  HN6  H  0 1 N N N 18.678 -1.123 14.521 6.651  3.546  0.576  HN6  XM1 51 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XM1 C2  C1   DOUB Y N 1  
XM1 N8  C1   SING Y N 2  
XM1 C1  N11  SING N N 3  
XM1 CL1 C25  SING N N 4  
XM1 C7  C2   SING Y N 5  
XM1 C3  C2   SING Y N 6  
XM1 C4  C3   DOUB Y N 7  
XM1 C3  H3   SING N N 8  
XM1 N6  C4   SING Y N 9  
XM1 C4  H4   SING N N 10 
XM1 N5  C21  SING N N 11 
XM1 N5  HN5  SING N N 12 
XM1 N5  HN5A SING N N 13 
XM1 N6  C7   SING Y N 14 
XM1 N10 C7   DOUB Y N 15 
XM1 C9  N8   DOUB Y N 16 
XM1 N10 C9   SING Y N 17 
XM1 C9  H9   SING N N 18 
XM1 N11 C12  SING N N 19 
XM1 N11 C16  SING N N 20 
XM1 C12 C13  SING N N 21 
XM1 C12 H12  SING N N 22 
XM1 C12 H12A SING N N 23 
XM1 C13 N14  SING N N 24 
XM1 C13 H13  SING N N 25 
XM1 C13 H13A SING N N 26 
XM1 C15 N14  SING N N 27 
XM1 N14 C17  SING N N 28 
XM1 C16 C15  SING N N 29 
XM1 C15 H15  SING N N 30 
XM1 C15 H15A SING N N 31 
XM1 C16 H16  SING N N 32 
XM1 C16 H16A SING N N 33 
XM1 C17 O18  DOUB N N 34 
XM1 C17 C19  SING N N 35 
XM1 C19 C20  SING N N 36 
XM1 C19 C21  SING N N 37 
XM1 C19 H19  SING N N 38 
XM1 C22 C20  SING N N 39 
XM1 C20 H20  SING N N 40 
XM1 C20 H20A SING N N 41 
XM1 C21 H21  SING N N 42 
XM1 C21 H21A SING N N 43 
XM1 C23 C22  DOUB Y N 44 
XM1 C27 C22  SING Y N 45 
XM1 C24 C23  SING Y N 46 
XM1 C23 H23  SING N N 47 
XM1 C25 C24  DOUB Y N 48 
XM1 C24 H24  SING N N 49 
XM1 C25 C26  SING Y N 50 
XM1 C26 C27  DOUB Y N 51 
XM1 C26 H26  SING N N 52 
XM1 C27 H27  SING N N 53 
XM1 N6  HN6  SING N N 54 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XM1 SMILES           ACDLabs              12.01 "O=C(N3CCN(c1ncnc2c1ccn2)CC3)C(Cc4ccc(Cl)cc4)CN"                                                                                                             
XM1 SMILES_CANONICAL CACTVS               3.370 "NC[C@H](Cc1ccc(Cl)cc1)C(=O)N2CCN(CC2)c3ncnc4[nH]ccc34"                                                                                                      
XM1 SMILES           CACTVS               3.370 "NC[CH](Cc1ccc(Cl)cc1)C(=O)N2CCN(CC2)c3ncnc4[nH]ccc34"                                                                                                       
XM1 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1cc(ccc1C[C@@H](CN)C(=O)N2CCN(CC2)c3c4cc[nH]c4ncn3)Cl"                                                                                                     
XM1 SMILES           "OpenEye OEToolkits" 1.7.0 "c1cc(ccc1CC(CN)C(=O)N2CCN(CC2)c3c4cc[nH]c4ncn3)Cl"                                                                                                          
XM1 InChI            InChI                1.03  "InChI=1S/C20H23ClN6O/c21-16-3-1-14(2-4-16)11-15(12-22)20(28)27-9-7-26(8-10-27)19-17-5-6-23-18(17)24-13-25-19/h1-6,13,15H,7-12,22H2,(H,23,24,25)/t15-/m0/s1" 
XM1 InChIKey         InChI                1.03  IYQSFRNHWXBIKV-HNNXBMFYSA-N                                                                                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XM1 "SYSTEMATIC NAME" ACDLabs              12.01 "(2S)-3-amino-2-(4-chlorobenzyl)-1-[4-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)piperazin-1-yl]propan-1-one"         
XM1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "(2S)-2-(aminomethyl)-3-(4-chlorophenyl)-1-[4-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)piperazin-1-yl]propan-1-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XM1 "Create component"     2010-08-10 RCSB 
XM1 "Modify aromatic_flag" 2011-06-04 RCSB 
XM1 "Modify descriptor"    2011-06-04 RCSB 
# 
