data_WS1
# 
_chem_comp.id                                    WS1 
_chem_comp.name                                  "6-(1-beta-D-Glucopyranosyloxymethyl)-N-(5'-deoxyluridine-5'-yl)picolinamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H28 N4 O12" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-04-29 
_chem_comp.pdbx_modified_date                    2015-02-25 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        540.477 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     WS1 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
WS1 O4    O4    O 0 1 N N N -6.035 -4.621 2.034  -6.035 -4.621 2.034  O4    WS1 1  
WS1 C4    C4    C 0 1 N N N -5.740 -3.625 1.398  -5.740 -3.625 1.398  C4    WS1 2  
WS1 N3    N3    N 0 1 N N N -5.435 -3.720 0.089  -5.435 -3.720 0.089  N3    WS1 3  
WS1 C2    C2    C 0 1 N N N -5.109 -2.619 -0.614 -5.109 -2.619 -0.614 C2    WS1 4  
WS1 O2    O2    O 0 1 N N N -4.836 -2.720 -1.794 -4.836 -2.720 -1.794 O2    WS1 5  
WS1 C5    C5    C 0 1 N N N -5.722 -2.356 2.026  -5.722 -2.356 2.026  C5    WS1 6  
WS1 C6    C6    C 0 1 N N N -5.392 -1.268 1.297  -5.392 -1.268 1.297  C6    WS1 7  
WS1 N1    N1    N 0 1 N N N -5.083 -1.408 -0.028 -5.083 -1.408 -0.028 N1    WS1 8  
WS1 "C1'" "C1'" C 0 1 N N R -4.725 -0.227 -0.818 -4.725 -0.227 -0.818 "C1'" WS1 9  
WS1 "O4'" "O4'" O 0 1 N N N -3.671 0.514  -0.166 -3.671 0.514  -0.166 "O4'" WS1 10 
WS1 "C2'" "C2'" C 0 1 N N R -5.916 0.754  -0.889 -5.916 0.754  -0.889 "C2'" WS1 11 
WS1 "O2'" "O2'" O 0 1 N N N -6.627 0.591  -2.118 -6.627 0.591  -2.118 "O2'" WS1 12 
WS1 "C3'" "C3'" C 0 1 N N S -5.258 2.150  -0.822 -5.258 2.150  -0.822 "C3'" WS1 13 
WS1 "O3'" "O3'" O 0 1 N N N -5.540 2.894  -2.010 -5.540 2.894  -2.010 "O3'" WS1 14 
WS1 "C4'" "C4'" C 0 1 N N R -3.744 1.846  -0.720 -3.744 1.846  -0.720 "C4'" WS1 15 
WS1 "C5'" "C5'" C 0 1 N N N -3.061 2.849  0.211  -3.061 2.849  0.211  "C5'" WS1 16 
WS1 N11   N11   N 0 1 N N N -1.614 2.619  0.201  -1.614 2.619  0.201  N11   WS1 17 
WS1 C12   C12   C 0 1 N N N -0.804 3.390  0.953  -0.804 3.390  0.953  C12   WS1 18 
WS1 O13   O13   O 0 1 N N N -1.273 4.276  1.640  -1.273 4.276  1.640  O13   WS1 19 
WS1 C14   C14   C 0 1 Y N N 0.660  3.157  0.942  0.660  3.157  0.942  C14   WS1 20 
WS1 C15   C15   C 0 1 Y N N 1.492  3.957  1.722  1.492  3.957  1.722  C15   WS1 21 
WS1 C16   C16   C 0 1 Y N N 2.859  3.727  1.702  2.859  3.727  1.702  C16   WS1 22 
WS1 C17   C17   C 0 1 Y N N 3.345  2.704  0.903  3.345  2.704  0.903  C17   WS1 23 
WS1 C18   C18   C 0 1 Y N N 2.459  1.947  0.153  2.459  1.947  0.153  C18   WS1 24 
WS1 N19   N19   N 0 1 Y N N 1.166  2.184  0.195  1.166  2.184  0.195  N19   WS1 25 
WS1 C20   C20   C 0 1 N N N 2.983  0.834  -0.717 2.983  0.834  -0.717 C20   WS1 26 
WS1 O21   O21   O 0 1 N N N 4.405  0.764  -0.595 4.405  0.764  -0.595 O21   WS1 27 
WS1 H1    H1    H 0 1 N N N -5.451 -4.612 -0.362 -5.449 -4.585 -0.349 H1    WS1 28 
WS1 H2    H2    H 0 1 N N N -5.969 -2.260 3.073  -5.969 -2.259 3.073  H2    WS1 29 
WS1 H3    H3    H 0 1 N N N -5.372 -0.292 1.758  -5.373 -0.291 1.759  H3    WS1 30 
WS1 H4    H4    H 0 1 N N N -4.428 -0.518 -1.836 -4.417 -0.522 -1.821 H4    WS1 31 
WS1 H5    H5    H 0 1 N N N -6.573 0.608  -0.019 -6.584 0.606  -0.040 H5    WS1 32 
WS1 H6    H6    H 0 1 N N N -7.025 -0.271 -2.142 -7.386 1.183  -2.215 H6    WS1 33 
WS1 H7    H7    H 0 1 N N N -5.596 2.682  0.080  -5.599 2.692  0.059  H7    WS1 34 
WS1 H8    H8    H 0 1 N N N -5.129 3.749  -1.954 -6.481 3.060  -2.155 H8    WS1 35 
WS1 H9    H9    H 0 1 N N N -3.287 1.888  -1.720 -3.284 1.873  -1.708 H9    WS1 36 
WS1 H10   H10   H 0 1 N N N -3.272 3.872  -0.134 -3.270 3.863  -0.130 H10   WS1 37 
WS1 H11   H11   H 0 1 N N N -3.445 2.721  1.234  -3.442 2.722  1.225  H11   WS1 38 
WS1 H12   H12   H 0 1 N N N -1.227 1.890  -0.364 -1.240 1.912  -0.347 H12   WS1 39 
WS1 H13   H13   H 0 1 N N N 1.078  4.745  2.334  1.079  4.745  2.333  H13   WS1 40 
WS1 H14   H14   H 0 1 N N N 3.530  4.331  2.295  3.529  4.330  2.295  H14   WS1 41 
WS1 H15   H15   H 0 1 N N N 4.405  2.499  0.865  4.405  2.499  0.865  H15   WS1 42 
WS1 H16   H16   H 0 1 N N N 2.714  1.030  -1.765 2.544  -0.112 -0.401 H16   WS1 43 
WS1 H17   H17   H 0 1 N N N 2.540  -0.121 -0.397 2.717  1.029  -1.756 H17   WS1 44 
WS1 C22   C22   C 0 1 N N R 5.006  -0.265 -1.385 5.006  -0.265 -1.385 C22   WS1 45 
WS1 C23   C23   C 0 1 N N R 6.530  -0.168 -1.275 6.530  -0.168 -1.275 C23   WS1 46 
WS1 C24   C24   C 0 1 N N R 6.944  -0.398 0.182  6.944  -0.398 0.182  C24   WS1 47 
WS1 C25   C25   C 0 1 N N S 6.413  -1.759 0.643  6.413  -1.759 0.643  C25   WS1 48 
WS1 C26   C26   C 0 1 N N S 4.894  -1.794 0.459  4.894  -1.794 0.459  C26   WS1 49 
WS1 O27   O27   O 0 1 N N N 4.575  -1.542 -0.911 4.575  -1.542 -0.911 O27   WS1 50 
WS1 C28   C28   C 0 1 N N N 4.362  -3.171 0.862  4.362  -3.171 0.862  C28   WS1 51 
WS1 O29   O29   O 0 1 N N N 2.935  -3.167 0.802  2.935  -3.167 0.802  O29   WS1 52 
WS1 O30   O30   O 0 1 N N N 7.012  -2.795 -0.137 7.012  -2.795 -0.137 O30   WS1 53 
WS1 O31   O31   O 0 1 N N N 8.370  -0.383 0.281  8.370  -0.383 0.281  O31   WS1 54 
WS1 O32   O32   O 0 1 N N N 7.132  -1.163 -2.106 7.132  -1.163 -2.106 O32   WS1 55 
WS1 H18   H18   H 0 1 N N N 4.722  -0.141 -2.441 4.708  -0.144 -2.426 H18   WS1 56 
WS1 H19   H19   H 0 1 N N N 6.850  0.838  -1.585 6.856  0.821  -1.595 H19   WS1 57 
WS1 H20   H20   H 0 1 N N N 6.505  0.391  0.810  6.525  0.389  0.809  H20   WS1 58 
WS1 H21   H21   H 0 1 N N N 6.649  -1.894 1.709  6.656  -1.907 1.696  H21   WS1 59 
WS1 H22   H22   H 0 1 N N N 4.437  -1.030 1.106  4.434  -1.029 1.086  H22   WS1 60 
WS1 H23   H23   H 0 1 N N N 4.756  -3.932 0.172  4.753  -3.925 0.179  H23   WS1 61 
WS1 H24   H24   H 0 1 N N N 4.685  -3.403 1.888  4.682  -3.401 1.878  H24   WS1 62 
WS1 H25   H25   H 0 1 N N N 2.605  -4.022 1.052  2.529  -4.010 1.045  H25   WS1 63 
WS1 H26   H26   H 0 1 N N N 6.682  -3.639 0.149  7.977  -2.829 -0.071 H26   WS1 64 
WS1 H27   H27   H 0 1 N N N 8.627  -0.526 1.184  8.775  0.448  -0.002 H27   WS1 65 
WS1 H28   H28   H 0 1 N N N 8.078  -1.103 -2.038 6.909  -1.081 -3.043 H28   WS1 66 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
WS1 "O2'" "C2'" SING N N 1  
WS1 "O3'" "C3'" SING N N 2  
WS1 "C3'" "C2'" SING N N 3  
WS1 "C3'" "C4'" SING N N 4  
WS1 "C2'" "C1'" SING N N 5  
WS1 "C4'" "C5'" SING N N 6  
WS1 "C4'" "O4'" SING N N 7  
WS1 "C5'" N11   SING N N 8  
WS1 O13   C12   DOUB N N 9  
WS1 "O4'" "C1'" SING N N 10 
WS1 "C1'" N1    SING N N 11 
WS1 C12   N11   SING N N 12 
WS1 C12   C14   SING N N 13 
WS1 O2    C2    DOUB N N 14 
WS1 O21   C20   SING N N 15 
WS1 N1    C2    SING N N 16 
WS1 N1    C6    SING N N 17 
WS1 C2    N3    SING N N 18 
WS1 N19   C14   DOUB Y N 19 
WS1 N19   C18   SING Y N 20 
WS1 C14   C15   SING Y N 21 
WS1 C6    C5    DOUB N N 22 
WS1 C20   C18   SING N N 23 
WS1 C18   C17   DOUB Y N 24 
WS1 N3    C4    SING N N 25 
WS1 C15   C16   DOUB Y N 26 
WS1 C5    C4    SING N N 27 
WS1 C4    O4    DOUB N N 28 
WS1 C17   C16   SING Y N 29 
WS1 N3    H1    SING N N 30 
WS1 C5    H2    SING N N 31 
WS1 C6    H3    SING N N 32 
WS1 "C1'" H4    SING N N 33 
WS1 "C2'" H5    SING N N 34 
WS1 "O2'" H6    SING N N 35 
WS1 "C3'" H7    SING N N 36 
WS1 "O3'" H8    SING N N 37 
WS1 "C4'" H9    SING N N 38 
WS1 "C5'" H10   SING N N 39 
WS1 "C5'" H11   SING N N 40 
WS1 N11   H12   SING N N 41 
WS1 C15   H13   SING N N 42 
WS1 C16   H14   SING N N 43 
WS1 C17   H15   SING N N 44 
WS1 C20   H16   SING N N 45 
WS1 C20   H17   SING N N 46 
WS1 O21   C22   SING N N 47 
WS1 C22   C23   SING N N 48 
WS1 C23   C24   SING N N 49 
WS1 C24   C25   SING N N 50 
WS1 C25   C26   SING N N 51 
WS1 C26   O27   SING N N 52 
WS1 O27   C22   SING N N 53 
WS1 C26   C28   SING N N 54 
WS1 C28   O29   SING N N 55 
WS1 C25   O30   SING N N 56 
WS1 C24   O31   SING N N 57 
WS1 C23   O32   SING N N 58 
WS1 C22   H18   SING N N 59 
WS1 C23   H19   SING N N 60 
WS1 C24   H20   SING N N 61 
WS1 C25   H21   SING N N 62 
WS1 C26   H22   SING N N 63 
WS1 C28   H23   SING N N 64 
WS1 C28   H24   SING N N 65 
WS1 O29   H25   SING N N 66 
WS1 O30   H26   SING N N 67 
WS1 O31   H27   SING N N 68 
WS1 O32   H28   SING N N 69 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
WS1 SMILES           ACDLabs              12.01 "O=C1C=CN(C(=O)N1)C2OC(C(O)C2O)CNC(=O)c3nc(ccc3)COC4OC(C(O)C(O)C4O)CO" 
WS1 InChI            InChI                1.03  
"InChI=1S/C22H28N4O12/c27-7-12-15(30)16(31)18(33)21(38-12)36-8-9-2-1-3-10(24-9)19(34)23-6-11-14(29)17(32)20(37-11)26-5-4-13(28)25-22(26)35/h1-5,11-12,14-18,20-21,27,29-33H,6-8H2,(H,23,34)(H,25,28,35)/t11-,12+,14-,15-,16-,17-,18-,20-,21-/m1/s1" 
WS1 InChIKey         InChI                1.03  KPOTWZYLDCHCIG-MJELCBSSSA-N 
WS1 SMILES_CANONICAL CACTVS               3.385 "OC[C@@H]1O[C@@H](OCc2cccc(n2)C(=O)NC[C@H]3O[C@H]([C@H](O)[C@@H]3O)N4C=CC(=O)NC4=O)[C@H](O)[C@H](O)[C@@H]1O" 
WS1 SMILES           CACTVS               3.385 "OC[CH]1O[CH](OCc2cccc(n2)C(=O)NC[CH]3O[CH]([CH](O)[CH]3O)N4C=CC(=O)NC4=O)[CH](O)[CH](O)[CH]1O" 
WS1 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1cc(nc(c1)C(=O)NC[C@@H]2[C@H]([C@H]([C@@H](O2)N3C=CC(=O)NC3=O)O)O)CO[C@H]4[C@@H]([C@@H]([C@@H]([C@@H](O4)CO)O)O)O" 
WS1 SMILES           "OpenEye OEToolkits" 1.7.6 "c1cc(nc(c1)C(=O)NCC2C(C(C(O2)N3C=CC(=O)NC3=O)O)O)COC4C(C(C(C(O4)CO)O)O)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
WS1 "SYSTEMATIC NAME" ACDLabs              12.01 "5'-deoxy-5'-[({6-[(alpha-L-talopyranosyloxy)methyl]pyridin-2-yl}carbonyl)amino]uridine"                                                                                                                
WS1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "N-[[(2R,3S,4R,5R)-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl]-6-[[(2R,3R,4R,5S,6S)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxymethyl]pyridine-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
WS1 "Create component"              2013-04-29 RCSB 
WS1 "Modify name"                   2013-04-29 RCSB 
WS1 "Modify formula"                2013-04-29 RCSB 
WS1 "Modify synonyms"               2013-04-29 RCSB 
WS1 "Modify model coordinates code" 2013-04-29 RCSB 
WS1 "Other modification"            2013-08-16 RCSB 
WS1 "Other modification"            2013-08-29 RCSB 
WS1 "Initial release"               2013-09-11 RCSB 
WS1 "Other modification"            2015-02-25 RCSB 
# 
