data_VL1
#

_chem_comp.id                                   VL1
_chem_comp.name                                 Gedatolisib
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C32 H41 N9 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "N-{4-[4,6-bis(morpholin-4-yl)-1,3,5-triazin-2-yl]phenyl}-N'-{4-[4-(dimethylamino)piperidine-1-carbonyl]phenyl}urea"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-08-26
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       615.726
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    VL1
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7JWE
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VL1  C10   C1   C  0  1  N  N  N  36.586  -3.755  17.548   -7.774   1.426   0.227  C10   VL1   1  
VL1  C13   C2   C  0  1  Y  N  N  35.105  -5.287  18.945   -6.301   2.703  -1.322  C13   VL1   2  
VL1  C15   C3   C  0  1  Y  N  N  32.994  -4.524  19.886   -3.970   2.987  -0.835  C15   VL1   3  
VL1  C17   C4   C  0  1  Y  N  N  34.332  -3.020  18.567   -5.348   1.743   0.684  C17   VL1   4  
VL1  C22   C5   C  0  1  Y  N  N  28.043  -4.267  21.367    0.764   2.598  -0.908  C22   VL1   5  
VL1  C24   C6   C  0  1  Y  N  N  26.485  -2.498  20.892    1.860   0.468  -0.798  C24   VL1   6  
VL1  C26   C7   C  0  1  Y  N  N  25.707  -4.519  22.005    3.103   2.497  -0.385  C26   VL1   7  
VL1  C28   C8   C  0  1  Y  N  N  24.007  -2.682  21.510    4.285   0.307  -0.247  C28   VL1   8  
VL1  C01   C9   C  0  1  N  N  N  39.875   1.474  19.414   -8.401  -3.961  -0.704  C01   VL1   9  
VL1  C03   C10  C  0  1  N  N  N  39.270   2.217  17.188   -7.405  -4.824   1.327  C03   VL1  10  
VL1  C04   C11  C  0  1  N  N  N  38.368   0.109  17.957   -8.186  -2.534   1.240  C04   VL1  11  
VL1  C05   C12  C  0  1  N  N  N  39.432  -0.743  17.718   -6.907  -1.974   0.612  C05   VL1  12  
VL1  C06   C13  C  0  1  N  N  N  39.025  -2.234  17.492   -6.663  -0.556   1.138  C06   VL1  13  
VL1  C08   C14  C  0  1  N  N  N  37.704  -1.814  19.311   -9.161  -0.238   1.368  C08   VL1  14  
VL1  C09   C15  C  0  1  N  N  N  37.456  -0.340  18.910   -9.376  -1.660   0.840  C09   VL1  15  
VL1  C12   C16  C  0  1  Y  N  N  35.287  -4.028  18.380   -6.452   1.966  -0.144  C12   VL1  16  
VL1  C14   C17  C  0  1  Y  N  N  33.948  -5.530  19.695   -5.066   3.206  -1.664  C14   VL1  17  
VL1  C16   C18  C  0  1  Y  N  N  33.173  -3.264  19.319   -4.118   2.259   0.342  C16   VL1  18  
VL1  C19   C19  C  0  1  N  N  N  30.501  -4.263  20.508   -1.602   2.810  -0.881  C19   VL1  19  
VL1  C23   C20  C  0  1  Y  N  N  27.802  -2.997  20.849    0.720   1.212  -1.010  C23   VL1  20  
VL1  C25   C21  C  0  1  Y  N  N  25.451  -3.254  21.462    3.059   1.106  -0.481  C25   VL1  21  
VL1  C27   C22  C  0  1  Y  N  N  27.018  -5.020  21.965    1.960   3.237  -0.597  C27   VL1  22  
VL1  C30   C23  C  0  1  Y  N  N  22.477  -1.007  21.046    5.345  -1.735  -0.138  C30   VL1  23  
VL1  C32   C24  C  0  1  Y  N  N  21.810  -2.915  22.168    6.528   0.199   0.266  C32   VL1  24  
VL1  C35   C25  C  0  1  N  N  N  20.954  -5.121  23.171    8.264   0.320   1.844  C35   VL1  25  
VL1  C36   C26  C  0  1  N  N  N  20.304  -5.446  24.514    9.606   1.003   2.123  C36   VL1  26  
VL1  C38   C27  C  0  1  N  N  N  18.794  -3.699  24.280    8.883   2.952   0.933  C38   VL1  27  
VL1  C39   C28  C  0  1  N  N  N  19.379  -3.323  22.917    7.534   2.289   0.641  C39   VL1  28  
VL1  C41   C29  C  0  1  N  N  N  22.980   1.472  20.864    6.281  -3.593  -1.230  C41   VL1  29  
VL1  C42   C30  C  0  1  N  N  N  22.252   2.779  21.202    6.244  -5.123  -1.271  C42   VL1  30  
VL1  C44   C31  C  0  1  N  N  N  20.358   1.467  21.670    3.936  -5.102  -0.631  C44   VL1  31  
VL1  C45   C32  C  0  1  N  N  N  20.763   0.754  20.388    3.950  -3.572  -0.583  C45   VL1  32  
VL1  N02   N1   N  0  1  N  N  N  38.815   1.488  18.381   -8.404  -3.906   0.764  N02   VL1  33  
VL1  N07   N2   N  0  1  N  N  N  37.613  -2.758  18.037   -7.863   0.254   0.886  N07   VL1  34  
VL1  N18   N3   N  0  1  N  N  N  31.810  -4.895  20.680   -2.721   3.498  -1.184  N18   VL1  35  
VL1  N21   N4   N  0  1  N  N  N  29.417  -4.797  21.370   -0.392   3.351  -1.123  N21   VL1  36  
VL1  N29   N5   N  0  1  Y  N  N  23.726  -1.483  20.983    4.244  -1.019  -0.343  N29   VL1  37  
VL1  N31   N6   N  0  1  Y  N  N  21.517  -1.721  21.640    6.487  -1.125   0.164  N31   VL1  38  
VL1  N33   N7   N  0  1  Y  N  N  23.057  -3.391  22.111    5.428   0.916   0.056  N33   VL1  39  
VL1  N34   N8   N  0  1  N  N  N  20.783  -3.712  22.826    7.714   0.831   0.580  N34   VL1  40  
VL1  N40   N9   N  0  1  N  N  N  22.161   0.322  20.451    5.304  -3.110  -0.243  N40   VL1  41  
VL1  O11   O1   O  0  1  N  N  N  36.769  -4.347  16.539   -8.784   2.040  -0.060  O11   VL1  42  
VL1  O20   O2   O  0  1  N  N  N  30.330  -3.401  19.721   -1.686   1.701  -0.389  O20   VL1  43  
VL1  O37   O3   O  0  1  N  N  N  18.982  -5.038  24.590    9.417   2.421   2.148  O37   VL1  44  
VL1  O43   O4   O  0  1  N  N  N  21.003   2.687  21.813    4.914  -5.554  -1.572  O43   VL1  45  
VL1  H131  H1   H  0  0  N  N  N  35.843  -6.063  18.807   -7.151   2.873  -1.965  H131  VL1  46  
VL1  H171  H2   H  0  0  N  N  N  34.490  -2.046  18.128   -5.462   1.179   1.597  H171  VL1  47  
VL1  H241  H3   H  0  0  N  N  N  26.270  -1.523  20.481    1.824  -0.609  -0.873  H241  VL1  48  
VL1  H261  H4   H  0  0  N  N  N  24.910  -5.099  22.447    4.030   2.993  -0.140  H261  VL1  49  
VL1  H012  H5   H  0  0  N  N  N  39.519   0.925  20.298   -8.565  -4.988  -1.030  H012  VL1  50  
VL1  H013  H6   H  0  0  N  N  N  40.772   0.979  19.012   -9.196  -3.325  -1.093  H013  VL1  51  
VL1  H011  H7   H  0  0  N  N  N  40.123   2.507  19.699   -7.440  -3.610  -1.079  H011  VL1  52  
VL1  H032  H8   H  0  0  N  N  N  39.600   3.226  17.478   -7.477  -4.816   2.414  H032  VL1  53  
VL1  H033  H9   H  0  0  N  N  N  40.108   1.676  16.725   -7.590  -5.833   0.958  H033  VL1  54  
VL1  H031  H10  H  0  0  N  N  N  38.442   2.295  16.468   -6.408  -4.505   1.026  H031  VL1  55  
VL1  H041  H11  H  0  0  N  N  N  37.824   0.240  17.010   -8.086  -2.537   2.325  H041  VL1  56  
VL1  H052  H12  H  0  0  N  N  N  40.110  -0.699  18.583   -6.062  -2.611   0.878  H052  VL1  57  
VL1  H051  H13  H  0  0  N  N  N  39.960  -0.390  16.820   -7.015  -1.947  -0.472  H051  VL1  58  
VL1  H062  H14  H  0  0  N  N  N  39.032  -2.406  16.406   -6.464  -0.592   2.209  H062  VL1  59  
VL1  H061  H15  H  0  0  N  N  N  39.801  -2.853  17.967   -5.810  -0.116   0.621  H061  VL1  60  
VL1  H082  H16  H  0  0  N  N  N  36.945  -2.122  20.045   -9.956   0.412   1.003  H082  VL1  61  
VL1  H081  H17  H  0  0  N  N  N  38.705  -1.904  19.758   -9.169  -0.248   2.458  H081  VL1  62  
VL1  H091  H18  H  0  0  N  N  N  37.543   0.290  19.807   -9.462  -1.635  -0.246  H091  VL1  63  
VL1  H092  H19  H  0  0  N  N  N  36.440  -0.252  18.497  -10.290  -2.072   1.268  H092  VL1  64  
VL1  H141  H20  H  0  0  N  N  N  33.790  -6.505  20.131   -4.948   3.771  -2.576  H141  VL1  65  
VL1  H161  H21  H  0  0  N  N  N  32.433  -2.489  19.456   -3.267   2.099   0.987  H161  VL1  66  
VL1  H231  H22  H  0  0  N  N  N  28.604  -2.410  20.425   -0.209   0.719  -1.255  H231  VL1  67  
VL1  H271  H23  H  0  0  N  N  N  27.239  -5.986  22.395    1.993   4.314  -0.523  H271  VL1  68  
VL1  H352  H24  H  0  0  N  N  N  20.490  -5.740  22.389    8.413  -0.757   1.767  H352  VL1  69  
VL1  H351  H25  H  0  0  N  N  N  22.029  -5.348  23.229    7.571   0.535   2.657  H351  VL1  70  
VL1  H362  H26  H  0  0  N  N  N  20.344  -6.534  24.668    9.991   0.670   3.087  H362  VL1  71  
VL1  H361  H27  H  0  0  N  N  N  20.872  -4.942  25.309   10.316   0.744   1.338  H361  VL1  72  
VL1  H382  H28  H  0  0  N  N  N  19.281  -3.087  25.053    9.573   2.750   0.113  H382  VL1  73  
VL1  H381  H29  H  0  0  N  N  N  17.715  -3.488  24.271    8.746   4.028   1.035  H381  VL1  74  
VL1  H392  H30  H  0  0  N  N  N  19.297  -2.235  22.778    6.829   2.536   1.435  H392  VL1  75  
VL1  H391  H31  H  0  0  N  N  N  18.811  -3.837  22.127    7.150   2.649  -0.313  H391  VL1  76  
VL1  H411  H32  H  0  0  N  N  N  23.545   1.169  21.758    7.280  -3.261  -0.945  H411  VL1  77  
VL1  H412  H33  H  0  0  N  N  N  23.680   1.688  20.044    6.033  -3.196  -2.214  H412  VL1  78  
VL1  H421  H34  H  0  0  N  N  N  22.905   3.354  21.875    6.926  -5.483  -2.041  H421  VL1  79  
VL1  H422  H35  H  0  0  N  N  N  22.117   3.332  20.261    6.545  -5.521  -0.302  H422  VL1  80  
VL1  H441  H36  H  0  0  N  N  N  19.272   1.640  21.652    4.170  -5.500   0.357  H441  VL1  81  
VL1  H442  H37  H  0  0  N  N  N  20.614   0.828  22.528    2.949  -5.448  -0.938  H442  VL1  82  
VL1  H451  H38  H  0  0  N  N  N  20.636   1.441  19.538    3.663  -3.175  -1.557  H451  VL1  83  
VL1  H452  H39  H  0  0  N  N  N  20.120  -0.127  20.247    3.246  -3.225   0.174  H452  VL1  84  
VL1  H181  H41  H  0  0  N  N  N  31.905  -5.613  21.370   -2.657   4.349  -1.645  H181  VL1  85  
VL1  H211  H42  H  0  0  N  N  N  29.631  -5.556  21.985   -0.324   4.262  -1.447  H211  VL1  86  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VL1  O11  C10   DOUB  N  N   1  
VL1  C03  N02   SING  N  N   2  
VL1  C06  C05   SING  N  N   3  
VL1  C06  N07   SING  N  N   4  
VL1  C10  N07   SING  N  N   5  
VL1  C10  C12   SING  N  N   6  
VL1  C05  C04   SING  N  N   7  
VL1  C04  N02   SING  N  N   8  
VL1  C04  C09   SING  N  N   9  
VL1  N07  C08   SING  N  N  10  
VL1  C12  C17   DOUB  Y  N  11  
VL1  C12  C13   SING  Y  N  12  
VL1  N02  C01   SING  N  N  13  
VL1  C17  C16   SING  Y  N  14  
VL1  C09  C08   SING  N  N  15  
VL1  C13  C14   DOUB  Y  N  16  
VL1  C16  C15   DOUB  Y  N  17  
VL1  C14  C15   SING  Y  N  18  
VL1  O20  C19   DOUB  N  N  19  
VL1  C15  N18   SING  N  N  20  
VL1  C45  N40   SING  N  N  21  
VL1  C45  C44   SING  N  N  22  
VL1  N40  C41   SING  N  N  23  
VL1  N40  C30   SING  N  N  24  
VL1  C19  N18   SING  N  N  25  
VL1  C19  N21   SING  N  N  26  
VL1  C23  C24   DOUB  Y  N  27  
VL1  C23  C22   SING  Y  N  28  
VL1  C41  C42   SING  N  N  29  
VL1  C24  C25   SING  Y  N  30  
VL1  N29  C30   DOUB  Y  N  31  
VL1  N29  C28   SING  Y  N  32  
VL1  C30  N31   SING  Y  N  33  
VL1  C42  O43   SING  N  N  34  
VL1  C22  N21   SING  N  N  35  
VL1  C22  C27   DOUB  Y  N  36  
VL1  C25  C28   SING  N  N  37  
VL1  C25  C26   DOUB  Y  N  38  
VL1  C28  N33   DOUB  Y  N  39  
VL1  N31  C32   DOUB  Y  N  40  
VL1  C44  O43   SING  N  N  41  
VL1  C27  C26   SING  Y  N  42  
VL1  N33  C32   SING  Y  N  43  
VL1  C32  N34   SING  N  N  44  
VL1  N34  C39   SING  N  N  45  
VL1  N34  C35   SING  N  N  46  
VL1  C39  C38   SING  N  N  47  
VL1  C35  C36   SING  N  N  48  
VL1  C38  O37   SING  N  N  49  
VL1  C36  O37   SING  N  N  50  
VL1  C13  H131  SING  N  N  51  
VL1  C17  H171  SING  N  N  52  
VL1  C24  H241  SING  N  N  53  
VL1  C26  H261  SING  N  N  54  
VL1  C01  H012  SING  N  N  55  
VL1  C01  H013  SING  N  N  56  
VL1  C01  H011  SING  N  N  57  
VL1  C03  H032  SING  N  N  58  
VL1  C03  H033  SING  N  N  59  
VL1  C03  H031  SING  N  N  60  
VL1  C04  H041  SING  N  N  61  
VL1  C05  H052  SING  N  N  62  
VL1  C05  H051  SING  N  N  63  
VL1  C06  H062  SING  N  N  64  
VL1  C06  H061  SING  N  N  65  
VL1  C08  H082  SING  N  N  66  
VL1  C08  H081  SING  N  N  67  
VL1  C09  H091  SING  N  N  68  
VL1  C09  H092  SING  N  N  69  
VL1  C14  H141  SING  N  N  70  
VL1  C16  H161  SING  N  N  71  
VL1  C23  H231  SING  N  N  72  
VL1  C27  H271  SING  N  N  73  
VL1  C35  H352  SING  N  N  74  
VL1  C35  H351  SING  N  N  75  
VL1  C36  H362  SING  N  N  76  
VL1  C36  H361  SING  N  N  77  
VL1  C38  H382  SING  N  N  78  
VL1  C38  H381  SING  N  N  79  
VL1  C39  H392  SING  N  N  80  
VL1  C39  H391  SING  N  N  81  
VL1  C41  H411  SING  N  N  82  
VL1  C41  H412  SING  N  N  83  
VL1  C42  H421  SING  N  N  84  
VL1  C42  H422  SING  N  N  85  
VL1  C44  H441  SING  N  N  86  
VL1  C44  H442  SING  N  N  87  
VL1  C45  H451  SING  N  N  88  
VL1  C45  H452  SING  N  N  89  
VL1  N18  H181  SING  N  N  90  
VL1  N21  H211  SING  N  N  91  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VL1  SMILES            ACDLabs               12.01  "C(N1CCC(N(C)C)CC1)(c6ccc(NC(Nc2ccc(cc2)c4nc(N3CCOCC3)nc(n4)N5CCOCC5)=O)cc6)=O"  
VL1  InChI             InChI                 1.03   "InChI=1S/C32H41N9O4/c1-38(2)27-11-13-39(14-12-27)29(42)24-5-9-26(10-6-24)34-32(43)33-25-7-3-23(4-8-25)28-35-30(40-15-19-44-20-16-40)37-31(36-28)41-17-21-45-22-18-41/h3-10,27H,11-22H2,1-2H3,(H2,33,34,43)"  
VL1  InChIKey          InChI                 1.03   DWZAEMINVBZMHQ-UHFFFAOYSA-N  
VL1  SMILES_CANONICAL  CACTVS                3.385  "CN(C)C1CCN(CC1)C(=O)c2ccc(NC(=O)Nc3ccc(cc3)c4nc(nc(n4)N5CCOCC5)N6CCOCC6)cc2"  
VL1  SMILES            CACTVS                3.385  "CN(C)C1CCN(CC1)C(=O)c2ccc(NC(=O)Nc3ccc(cc3)c4nc(nc(n4)N5CCOCC5)N6CCOCC6)cc2"  
VL1  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CN(C)C1CCN(CC1)C(=O)c2ccc(cc2)NC(=O)Nc3ccc(cc3)c4nc(nc(n4)N5CCOCC5)N6CCOCC6"  
VL1  SMILES            "OpenEye OEToolkits"  2.0.7  "CN(C)C1CCN(CC1)C(=O)c2ccc(cc2)NC(=O)Nc3ccc(cc3)c4nc(nc(n4)N5CCOCC5)N6CCOCC6"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
VL1  "SYSTEMATIC NAME"  ACDLabs               12.01  "N-{4-[4,6-bis(morpholin-4-yl)-1,3,5-triazin-2-yl]phenyl}-N'-{4-[4-(dimethylamino)piperidine-1-carbonyl]phenyl}urea"  
VL1  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "1-[4-[4-(dimethylamino)piperidin-1-yl]carbonylphenyl]-3-[4-(4,6-dimorpholin-4-yl-1,3,5-triazin-2-yl)phenyl]urea"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VL1  "Create component"  2020-08-26  RCSB  
VL1  "Initial release"   2021-03-17  RCSB  
VL1  "Modify synonyms"   2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     VL1
_pdbx_chem_comp_synonyms.name        "N-{4-[4,6-bis(morpholin-4-yl)-1,3,5-triazin-2-yl]phenyl}-N'-{4-[4-(dimethylamino)piperidine-1-carbonyl]phenyl}urea"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
