data_VG1
# 
_chem_comp.id                                    VG1 
_chem_comp.name                                  ALPHA-D-GLUCOSE-1-PHOSPHATE-6-VANADATE 
_chem_comp.type                                  D-saccharide 
_chem_comp.pdbx_type                             ATOMS 
_chem_comp.formula                               "C6 H13 O12 P V" 
_chem_comp.mon_nstd_parent_comp_id               GLC 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     1999-08-24 
_chem_comp.pdbx_modified_date                    2025-11-11 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        359.075 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VG1 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1C4G 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VG1 C1   C1   C 0 1 N N R N N N 39.548 68.756 74.412 -0.008 -0.798 2.057  C1   VG1 1  
VG1 C2   C2   C 0 1 N N R N N N 39.978 70.164 73.917 1.327  -0.844 2.802  C2   VG1 2  
VG1 C3   C3   C 0 1 N N S N N N 38.752 70.876 73.276 2.231  0.277  2.277  C3   VG1 3  
VG1 C4   C4   C 0 1 N N S N N N 38.218 69.956 72.157 2.326  0.161  0.752  C4   VG1 4  
VG1 C5   C5   C 0 1 N N R N N N 37.900 68.547 72.681 0.913  0.133  0.164  C5   VG1 5  
VG1 C6   C6   C 0 1 N N N N N N 37.364 67.735 71.578 0.998  0.050  -1.360 C6   VG1 6  
VG1 O1   O1   O 0 1 N N N N N N 38.402 68.864 75.281 -0.618 0.477  2.264  O1   VG1 7  
VG1 O2   O2   O 0 1 N N N N N N 40.390 70.888 75.106 1.100  -0.669 4.202  O2   VG1 8  
VG1 O3   O3   O 0 1 N N N N N N 39.238 72.095 72.645 3.534  0.151  2.850  O3   VG1 9  
VG1 O4   O4   O 0 1 N N N N N N 37.098 70.496 71.439 3.040  1.283  0.231  O4   VG1 10 
VG1 O5   O5   O 0 1 N N N N N N 39.183 68.017 73.246 0.205  -1.000 0.661  O5   VG1 11 
VG1 O6   O6   O 0 1 N N N N N N 38.453 67.419 70.766 -0.320 0.024  -1.910 O6   VG1 12 
VG1 P    P    P 0 1 N N N N N N 38.464 68.086 76.558 -2.211 0.244  2.211  P    VG1 13 
VG1 OP1  OP1  O 0 1 N N N N N N 39.744 67.312 76.621 -2.965 1.648  2.439  OP1  VG1 14 
VG1 OP2  OP2  O 0 1 N N N N N N 38.377 69.058 77.694 -2.618 -0.357 0.775  OP2  VG1 15 
VG1 OP3  OP3  O 0 1 N N N N N N 37.315 67.126 76.616 -2.606 -0.705 3.275  OP3  VG1 16 
VG1 V    V    V 0 1 N N N N N N 38.552 66.540 69.107 -0.133 -0.074 -3.737 V    VG1 17 
VG1 OV1  OV1  O 0 1 N N N N N N 39.591 67.591 68.205 -1.796 -0.112 -4.523 OV1  VG1 18 
VG1 OV2  OV2  O 0 1 N N N N N N 39.255 65.278 70.029 0.666  1.189  -4.256 OV2  VG1 19 
VG1 OV3  OV3  O 0 1 N N N N N N 36.828 66.734 68.998 0.658  -1.392 -4.116 OV3  VG1 20 
VG1 H1   H1   H 0 1 N N N N N N 40.371 68.262 74.979 -0.664 -1.580 2.440  H1   VG1 21 
VG1 H2   H2   H 0 1 N N N N N N 40.793 70.112 73.158 1.809  -1.807 2.628  H2   VG1 22 
VG1 H3   H3   H 0 1 N N N N N N 37.964 71.095 74.033 1.805  1.244  2.545  H3   VG1 23 
VG1 H4   H4   H 0 1 N N N N N N 39.052 69.884 71.420 2.848  -0.758 0.488  H4   VG1 24 
VG1 H5   H5   H 0 1 N N N N N N 37.120 68.534 73.477 0.385  1.043  0.449  H5   VG1 25 
VG1 H61  H61  H 0 1 N N N N N N 36.791 66.841 71.921 1.533  0.919  -1.742 H61  VG1 26 
VG1 H62  H62  H 0 1 N N N N N N 36.528 68.228 71.028 1.528  -0.857 -1.646 H62  VG1 27 
VG1 HO2  HO2  H 0 1 N N N N N N 40.653 71.749 74.803 0.525  -1.393 4.485  HO2  VG1 28 
VG1 HO3  HO3  H 0 1 N N N N N N 38.489 72.529 72.253 3.426  0.224  3.808  HO3  VG1 29 
VG1 HO4  HO4  H 0 1 N N N N N N 36.769 69.929 70.750 3.920  1.265  0.631  HO4  VG1 30 
VG1 HOP1 HOP1 H 0 0 N N N N N N 39.783 66.818 77.431 -3.914 1.465  2.400  HOP1 VG1 31 
VG1 HOP2 HOP2 H 0 0 N N N N N N 38.416 68.564 78.504 -2.344 0.291  0.112  HOP2 VG1 32 
VG1 HTV  HTV  H 0 1 N N N N N N 39.641 67.146 67.366 -1.653 -0.164 -5.478 HTV  VG1 33 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VG1 C1  C2   SING N N 1  
VG1 C1  O1   SING N N 2  
VG1 C1  O5   SING N N 3  
VG1 C1  H1   SING N N 4  
VG1 C2  C3   SING N N 5  
VG1 C2  O2   SING N N 6  
VG1 C2  H2   SING N N 7  
VG1 C3  C4   SING N N 8  
VG1 C3  O3   SING N N 9  
VG1 C3  H3   SING N N 10 
VG1 C4  C5   SING N N 11 
VG1 C4  O4   SING N N 12 
VG1 C4  H4   SING N N 13 
VG1 C5  C6   SING N N 14 
VG1 C5  O5   SING N N 15 
VG1 C5  H5   SING N N 16 
VG1 C6  O6   SING N N 17 
VG1 C6  H61  SING N N 18 
VG1 C6  H62  SING N N 19 
VG1 O1  P    SING N N 20 
VG1 O2  HO2  SING N N 21 
VG1 O3  HO3  SING N N 22 
VG1 O4  HO4  SING N N 23 
VG1 O6  V    SING N N 24 
VG1 P   OP1  SING N N 25 
VG1 P   OP2  SING N N 26 
VG1 P   OP3  DOUB N N 27 
VG1 OP1 HOP1 SING N N 28 
VG1 OP2 HOP2 SING N N 29 
VG1 V   OV1  SING N N 30 
VG1 V   OV2  DOUB N N 31 
VG1 V   OV3  DOUB N N 32 
VG1 OV1 HTV  SING N N 33 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VG1 SMILES           ACDLabs              10.04 "O=P(OC1OC(C(O)C(O)C1O)CO[V](=O)(=O)O)(O)O"                                                                                                                
VG1 SMILES_CANONICAL CACTVS               3.341 "O[C@H]1[C@H](O)[C@@H](CO[V](O)(=O)=O)O[C@H](O[P](O)(O)=O)[C@@H]1O"                                                                                        
VG1 SMILES           CACTVS               3.341 "O[CH]1[CH](O)[CH](CO[V](O)(=O)=O)O[CH](O[P](O)(O)=O)[CH]1O"                                                                                               
VG1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)OP(=O)(O)O)O)O)O)O[V](=O)(=O)O"                                                                                      
VG1 SMILES           "OpenEye OEToolkits" 1.5.0 "C(C1C(C(C(C(O1)OP(=O)(O)O)O)O)O)O[V](=O)(=O)O"                                                                                                            
VG1 InChI            InChI                1.03  "InChI=1S/C6H12O9P.H2O.2O.V/c7-1-2-3(8)4(9)5(10)6(14-2)15-16(11,12)13;;;;/h2-6,8-10H,1H2,(H2,11,12,13);1H2;;;/q-1;;;;+2/p-1/t2-,3-,4+,5-,6-;;;;/m1..../s1" 
VG1 InChIKey         InChI                1.03  SYRDAPWACIANBN-QMKHLHGBSA-M                                                                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
VG1 "SYSTEMATIC NAME" ACDLabs              10.04 "hydroxy(dioxo)(1-O-phosphono-alpha-D-glucopyranosato-kappaO~6~)vanadium"                     
VG1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "hydroxy-dioxo-[[(2R,3S,4S,5R,6R)-3,4,5-trihydroxy-6-phosphonooxy-oxan-2-yl]methoxy]vanadium" 
# 
_pdbx_chem_comp_related.comp_id             VG1 
_pdbx_chem_comp_related.related_comp_id     GLC 
_pdbx_chem_comp_related.relationship_type   "Carbohydrate core" 
_pdbx_chem_comp_related.details             ? 
# 
loop_
_pdbx_chem_comp_atom_related.ordinal 
_pdbx_chem_comp_atom_related.comp_id 
_pdbx_chem_comp_atom_related.atom_id 
_pdbx_chem_comp_atom_related.related_comp_id 
_pdbx_chem_comp_atom_related.related_atom_id 
_pdbx_chem_comp_atom_related.related_type 
1  VG1 C1  GLC C1  "Carbohydrate core" 
2  VG1 C2  GLC C2  "Carbohydrate core" 
3  VG1 C3  GLC C3  "Carbohydrate core" 
4  VG1 C4  GLC C4  "Carbohydrate core" 
5  VG1 C5  GLC C5  "Carbohydrate core" 
6  VG1 C6  GLC C6  "Carbohydrate core" 
7  VG1 O1  GLC O1  "Carbohydrate core" 
8  VG1 O2  GLC O2  "Carbohydrate core" 
9  VG1 O3  GLC O3  "Carbohydrate core" 
10 VG1 O4  GLC O4  "Carbohydrate core" 
11 VG1 O5  GLC O5  "Carbohydrate core" 
12 VG1 O6  GLC O6  "Carbohydrate core" 
13 VG1 H1  GLC H1  "Carbohydrate core" 
14 VG1 H2  GLC H2  "Carbohydrate core" 
15 VG1 H3  GLC H3  "Carbohydrate core" 
16 VG1 H4  GLC H4  "Carbohydrate core" 
17 VG1 H5  GLC H5  "Carbohydrate core" 
18 VG1 H61 GLC H61 "Carbohydrate core" 
19 VG1 H62 GLC H62 "Carbohydrate core" 
20 VG1 HO2 GLC HO2 "Carbohydrate core" 
21 VG1 HO3 GLC HO3 "Carbohydrate core" 
22 VG1 HO4 GLC HO4 "Carbohydrate core" 
# 
loop_
_pdbx_chem_comp_feature.comp_id 
_pdbx_chem_comp_feature.type 
_pdbx_chem_comp_feature.value 
_pdbx_chem_comp_feature.source 
_pdbx_chem_comp_feature.support 
VG1 "CARBOHYDRATE ISOMER"                 D        PDB ? 
VG1 "CARBOHYDRATE RING"                   pyranose PDB ? 
VG1 "CARBOHYDRATE ANOMER"                 alpha    PDB ? 
VG1 "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose   PDB ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VG1 "Create component"         1999-08-24 EBI  
VG1 "Modify descriptor"        2011-06-04 RCSB 
VG1 "Other modification"       2020-07-03 RCSB 
VG1 "Modify parent residue"    2020-07-17 RCSB 
VG1 "Modify internal type"     2020-07-17 RCSB 
VG1 "Modify linking type"      2020-07-17 RCSB 
VG1 "Modify leaving atom flag" 2020-07-17 RCSB 
VG1 "Modify leaving atom flag" 2025-11-11 RCSB 
# 
