data_TO1
#

_chem_comp.id                                   TO1
_chem_comp.name                                 "4-amino-7-(beta-D-ribofuranosyl)-7H-pyrrolo[2,3-d]pyrimidine-5-carbonitrile"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAD
_chem_comp.formula                              "C12 H13 N5 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        TOYOCAMYCIN
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2011-04-22
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       291.263
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    TO1
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3RE4
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
TO1  C     C     C  0  1  N  N  R  -18.647  -3.527   3.758   1.159  -0.393   0.402  C     TO1   1  
TO1  N     N     N  0  1  Y  N  N  -17.781  -3.685   2.563  -0.216   0.070   0.197  N     TO1   2  
TO1  O     O     O  0  1  N  N  N  -18.870  -2.140   4.052   2.029   0.724   0.688  O     TO1   3  
TO1  C2    C2    C  0  1  Y  N  N  -17.796  -4.768   1.770  -1.334  -0.704   0.362  C2    TO1   4  
TO1  N2    N2    N  0  1  Y  N  N  -18.487  -5.916   1.739  -1.539  -1.972   0.717  N2    TO1   5  
TO1  O2    O2    O  0  1  N  N  N  -19.025  -4.950   5.625   1.618  -2.431  -0.867  O2    TO1   6  
TO1  C3    C3    C  0  1  Y  N  N  -18.295  -6.838   0.799  -2.758  -2.460   0.794  C3    TO1   7  
TO1  N3    N3    N  0  1  Y  N  N  -17.394  -6.704  -0.196  -3.832  -1.739   0.530  N3    TO1   8  
TO1  O3    O3    O  0  1  N  N  N  -18.273  -3.401   7.153   4.061  -1.710  -0.889  O3    TO1   9  
TO1  C4    C4    C  0  1  Y  N  N  -16.628  -5.627  -0.327  -3.728  -0.463   0.168  C4    TO1  10  
TO1  N4    N4    N  0  1  N  N  N  -14.450  -2.344  -0.404  -3.273   3.499  -0.951  N4    TO1  11  
TO1  O4    O4    O  0  1  N  N  N  -16.228  -0.819   4.899   4.466   2.167   1.367  O4    TO1  12  
TO1  C5    C5    C  0  1  Y  N  N  -16.811  -4.607   0.700  -2.450   0.099   0.072  C5    TO1  13  
TO1  N5    N5    N  0  1  N  N  N  -15.704  -5.437  -1.283  -4.856   0.290  -0.109  N5    TO1  14  
TO1  C6    C6    C  0  1  Y  N  N  -16.288  -3.254   1.024  -1.917   1.424  -0.282  C6    TO1  15  
TO1  C7    C7    C  0  1  Y  N  N  -16.873  -2.768   2.153  -0.561   1.332  -0.179  C7    TO1  16  
TO1  C8    C8    C  0  1  N  N  N  -15.296  -2.587   0.386  -2.673   2.581  -0.655  C8    TO1  17  
TO1  C9    C9    C  0  1  N  N  R  -18.010  -4.168   4.986   1.719  -1.006  -0.901  C9    TO1  18  
TO1  C10   C10   C  0  1  N  N  S  -17.699  -3.028   5.907   3.201  -0.569  -0.914  C10   TO1  19  
TO1  C11   C11   C  0  1  N  N  R  -18.434  -1.799   5.369   3.361   0.257   0.382  C11   TO1  20  
TO1  C12   C12   C  0  1  N  N  N  -17.575  -0.531   5.323   4.299   1.442   0.147  C12   TO1  21  
TO1  H     H     H  0  1  N  N  N  -19.601  -4.023   3.527   1.196  -1.121   1.212  H     TO1  22  
TO1  HO2   HO2   H  0  1  N  N  N  -18.664  -5.367   6.398   1.956  -2.868  -1.661  HO2   TO1  23  
TO1  H3    H3    H  0  1  N  N  N  -18.890  -7.739   0.834  -2.886  -3.492   1.086  H3    TO1  24  
TO1  HO3   HO3   H  0  1  N  N  N  -18.113  -2.717   7.793   5.003  -1.493  -0.896  HO3   TO1  25  
TO1  HO4   HO4   H  0  1  N  N  N  -15.722  -0.015   4.881   5.051   2.934   1.292  HO4   TO1  26  
TO1  HN5   HN5   H  0  1  N  N  N  -15.679  -6.234  -1.886  -5.736  -0.112  -0.039  HN5   TO1  27  
TO1  HN5A  HN5A  H  0  0  N  N  N  -15.938  -4.624  -1.815  -4.766   1.219  -0.372  HN5A  TO1  28  
TO1  H7    H7    H  0  1  N  N  N  -16.654  -1.826   2.633   0.134   2.136  -0.369  H7    TO1  29  
TO1  H9    H9    H  0  1  N  N  N  -17.128  -4.778   4.741   1.194  -0.607  -1.768  H9    TO1  30  
TO1  H10   H10   H  0  1  N  N  N  -16.624  -2.812   5.996   3.410   0.047  -1.789  H10   TO1  31  
TO1  H11   H11   H  0  1  N  N  N  -19.265  -1.557   6.047   3.737  -0.372   1.189  H11   TO1  32  
TO1  H12   H12   H  0  1  N  N  N  -17.542  -0.089   6.330   3.872   2.099  -0.610  H12   TO1  33  
TO1  H12A  H12A  H  0  0  N  N  N  -18.026   0.177   4.612   5.268   1.076  -0.194  H12A  TO1  34  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
TO1  C    N     SING  N  N   1  
TO1  C    O     SING  N  N   2  
TO1  C    C9    SING  N  N   3  
TO1  N    C2    SING  Y  N   4  
TO1  N    C7    SING  Y  N   5  
TO1  O    C11   SING  N  N   6  
TO1  C2   N2    DOUB  Y  N   7  
TO1  C2   C5    SING  Y  N   8  
TO1  N2   C3    SING  Y  N   9  
TO1  O2   C9    SING  N  N  10  
TO1  C3   N3    DOUB  Y  N  11  
TO1  N3   C4    SING  Y  N  12  
TO1  O3   C10   SING  N  N  13  
TO1  C4   C5    DOUB  Y  N  14  
TO1  C4   N5    SING  N  N  15  
TO1  N4   C8    TRIP  N  N  16  
TO1  O4   C12   SING  N  N  17  
TO1  C5   C6    SING  Y  N  18  
TO1  C6   C7    DOUB  Y  N  19  
TO1  C6   C8    SING  N  N  20  
TO1  C9   C10   SING  N  N  21  
TO1  C10  C11   SING  N  N  22  
TO1  C11  C12   SING  N  N  23  
TO1  C    H     SING  N  N  24  
TO1  O2   HO2   SING  N  N  25  
TO1  C3   H3    SING  N  N  26  
TO1  O3   HO3   SING  N  N  27  
TO1  O4   HO4   SING  N  N  28  
TO1  N5   HN5   SING  N  N  29  
TO1  N5   HN5A  SING  N  N  30  
TO1  C7   H7    SING  N  N  31  
TO1  C9   H9    SING  N  N  32  
TO1  C10  H10   SING  N  N  33  
TO1  C11  H11   SING  N  N  34  
TO1  C12  H12   SING  N  N  35  
TO1  C12  H12A  SING  N  N  36  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
TO1  SMILES            ACDLabs               12.01  "N#Cc2c1c(ncnc1n(c2)C3OC(C(O)C3O)CO)N"  
TO1  SMILES_CANONICAL  CACTVS                3.370  "Nc1ncnc2n(cc(C#N)c12)[C@@H]3O[C@H](CO)[C@@H](O)[C@H]3O"  
TO1  SMILES            CACTVS                3.370  "Nc1ncnc2n(cc(C#N)c12)[CH]3O[CH](CO)[CH](O)[CH]3O"  
TO1  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.2  "c1c(c2c(ncnc2n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)N)C#N"  
TO1  SMILES            "OpenEye OEToolkits"  1.7.2  "c1c(c2c(ncnc2n1C3C(C(C(O3)CO)O)O)N)C#N"  
TO1  InChI             InChI                 1.03   "InChI=1S/C12H13N5O4/c13-1-5-2-17(11-7(5)10(14)15-4-16-11)12-9(20)8(19)6(3-18)21-12/h2,4,6,8-9,12,18-20H,3H2,(H2,14,15,16)/t6-,8-,9-,12-/m1/s1"  
TO1  InChIKey          InChI                 1.03   XOKJUSAYZUAMGJ-WOUKDFQISA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
TO1  "SYSTEMATIC NAME"  ACDLabs               12.01  "4-amino-7-(beta-D-ribofuranosyl)-7H-pyrrolo[2,3-d]pyrimidine-5-carbonitrile"  
TO1  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.2  "4-azanyl-7-[(2R,3R,4S,5R)-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]pyrrolo[2,3-d]pyrimidine-5-carbonitrile"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
TO1  "Create component"      2011-04-22  RCSB  
TO1  "Modify aromatic_flag"  2011-06-04  RCSB  
TO1  "Modify descriptor"     2011-06-04  RCSB  
TO1  "Modify synonyms"       2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     TO1
_pdbx_chem_comp_synonyms.name        TOYOCAMYCIN
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
