data_LB1
# 
_chem_comp.id                                    LB1 
_chem_comp.name                                  "(1S,2R,3S,4R)-3-(4-methylpiperazine-1-carbonyl)-7-oxabicyclo[2.2.1]heptane-2-carboxylic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C13 H20 N2 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-07-17 
_chem_comp.pdbx_modified_date                    2018-07-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        268.309 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     LB1 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5WG8 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
LB1 C10 C1  C 0 1 N N R 4.507 -1.932 -9.962  -1.518 -0.779 -0.633 C10 LB1 1  
LB1 C13 C2  C 0 1 N N N 2.893 -0.352 -11.160 -0.103 0.865  0.642  C13 LB1 2  
LB1 C07 C3  C 0 1 N N S 3.947 -0.508 -10.091 -1.192 0.717  -0.389 C07 LB1 3  
LB1 C08 C4  C 0 1 N N R 5.208 0.299  -10.476 -2.541 1.281  0.148  C08 LB1 4  
LB1 C09 C5  C 0 1 N N S 5.999 -1.691 -10.226 -3.012 -0.880 -0.204 C09 LB1 5  
LB1 C11 C6  C 0 1 N N N 6.141 0.488  -9.275  -3.488 1.332  -1.088 C11 LB1 6  
LB1 C12 C7  C 0 1 N N N 6.650 -0.947 -9.056  -3.814 -0.164 -1.332 C12 LB1 7  
LB1 C14 C8  C 0 1 N N N 3.989 -2.963 -10.942 -0.650 -1.661 0.227  C14 LB1 8  
LB1 O01 O1  O 0 1 N N N 5.968 -0.667 -11.249 -3.071 0.119  0.867  O01 LB1 9  
LB1 O02 O2  O 0 1 N N N 3.208 -0.762 -12.283 -0.381 0.860  1.823  O02 LB1 10 
LB1 O04 O3  O 0 1 N N N 4.671 -3.248 -11.931 -0.985 -1.919 1.359  O04 LB1 11 
LB1 H1  H1  H 0 1 N N N 4.368 -2.291 -8.932  -1.400 -1.033 -1.686 H1  LB1 12 
LB1 H3  H3  H 0 1 N N N 3.563 -0.164 -9.119  -0.908 1.207  -1.320 H3  LB1 13 
LB1 H4  H4  H 0 1 N N N 4.979 1.236  -11.004 -2.467 2.207  0.718  H4  LB1 14 
LB1 H5  H5  H 0 1 N N N 6.540 -2.606 -10.511 -3.358 -1.882 0.051  H5  LB1 15 
LB1 H6  H6  H 0 1 N N N 6.966 1.176  -9.511  -4.394 1.892  -0.858 H6  LB1 16 
LB1 H7  H7  H 0 1 N N N 5.594 0.859  -8.396  -2.976 1.761  -1.949 H7  LB1 17 
LB1 H8  H8  H 0 1 N N N 6.313 -1.348 -8.089  -3.464 -0.480 -2.315 H8  LB1 18 
LB1 H9  H9  H 0 1 N N N 7.748 -0.996 -9.111  -4.883 -0.349 -1.223 H9  LB1 19 
LB1 O1  O4  O 0 1 N N N ?     ?      ?       0.494  -2.161 -0.264 O1  LB1 20 
LB1 N1  N1  N 0 1 N N N ?     ?      ?       1.180  1.002  0.253  N1  LB1 21 
LB1 C2  C9  C 0 1 N N N ?     ?      ?       2.258  1.147  1.243  C2  LB1 22 
LB1 C3  C10 C 0 1 N N N ?     ?      ?       3.354  0.125  0.923  C3  LB1 23 
LB1 N2  N2  N 0 1 N N N ?     ?      ?       3.771  0.281  -0.477 N2  LB1 24 
LB1 C5  C11 C 0 1 N N N ?     ?      ?       2.664  -0.007 -1.398 C5  LB1 25 
LB1 C6  C12 C 0 1 N N N ?     ?      ?       1.540  1.004  -1.173 C6  LB1 26 
LB1 C1  C13 C 0 1 N N N ?     ?      ?       4.937  -0.562 -0.776 C1  LB1 27 
LB1 H2  H2  H 0 1 N N N ?     ?      ?       1.017  -2.722 0.325  H2  LB1 28 
LB1 H10 H10 H 0 1 N N N ?     ?      ?       2.671  2.155  1.190  H10 LB1 29 
LB1 H11 H11 H 0 1 N N N ?     ?      ?       1.865  0.962  2.243  H11 LB1 30 
LB1 H12 H12 H 0 1 N N N ?     ?      ?       4.209  0.291  1.578  H12 LB1 31 
LB1 H13 H13 H 0 1 N N N ?     ?      ?       2.968  -0.883 1.078  H13 LB1 32 
LB1 H14 H14 H 0 1 N N N ?     ?      ?       3.018  0.064  -2.426 H14 LB1 33 
LB1 H15 H15 H 0 1 N N N ?     ?      ?       2.287  -1.013 -1.211 H15 LB1 34 
LB1 H16 H16 H 0 1 N N N ?     ?      ?       0.673  0.726  -1.772 H16 LB1 35 
LB1 H17 H17 H 0 1 N N N ?     ?      ?       1.881  1.999  -1.457 H17 LB1 36 
LB1 H18 H18 H 0 1 N N N ?     ?      ?       4.684  -1.608 -0.601 H18 LB1 37 
LB1 H19 H19 H 0 1 N N N ?     ?      ?       5.225  -0.427 -1.818 H19 LB1 38 
LB1 H20 H20 H 0 1 N N N ?     ?      ?       5.767  -0.276 -0.130 H20 LB1 39 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
LB1 O02 C13 DOUB N N 1  
LB1 O04 C14 DOUB N N 2  
LB1 O01 C08 SING N N 3  
LB1 O01 C09 SING N N 4  
LB1 C13 C07 SING N N 5  
LB1 C14 C10 SING N N 6  
LB1 C08 C07 SING N N 7  
LB1 C08 C11 SING N N 8  
LB1 C09 C10 SING N N 9  
LB1 C09 C12 SING N N 10 
LB1 C07 C10 SING N N 11 
LB1 C11 C12 SING N N 12 
LB1 C10 H1  SING N N 13 
LB1 C07 H3  SING N N 14 
LB1 C08 H4  SING N N 15 
LB1 C09 H5  SING N N 16 
LB1 C11 H6  SING N N 17 
LB1 C11 H7  SING N N 18 
LB1 C12 H8  SING N N 19 
LB1 C12 H9  SING N N 20 
LB1 C14 O1  SING N N 21 
LB1 C13 N1  SING N N 22 
LB1 N1  C2  SING N N 23 
LB1 C2  C3  SING N N 24 
LB1 C3  N2  SING N N 25 
LB1 N2  C5  SING N N 26 
LB1 C5  C6  SING N N 27 
LB1 C6  N1  SING N N 28 
LB1 N2  C1  SING N N 29 
LB1 O1  H2  SING N N 30 
LB1 C2  H10 SING N N 31 
LB1 C2  H11 SING N N 32 
LB1 C3  H12 SING N N 33 
LB1 C3  H13 SING N N 34 
LB1 C5  H14 SING N N 35 
LB1 C5  H15 SING N N 36 
LB1 C6  H16 SING N N 37 
LB1 C6  H17 SING N N 38 
LB1 C1  H18 SING N N 39 
LB1 C1  H19 SING N N 40 
LB1 C1  H20 SING N N 41 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
LB1 SMILES           ACDLabs              12.01 "C2(C(C(N1CCN(CC1)C)=O)C3CCC2O3)C(O)=O"                                                                                        
LB1 InChI            InChI                1.03  "InChI=1S/C13H20N2O4/c1-14-4-6-15(7-5-14)12(16)10-8-2-3-9(19-8)11(10)13(17)18/h8-11H,2-7H2,1H3,(H,17,18)/t8-,9+,10-,11+/m1/s1" 
LB1 InChIKey         InChI                1.03  JUQMLSGOTNKJKI-YTWAJWBKSA-N                                                                                                    
LB1 SMILES_CANONICAL CACTVS               3.385 "CN1CCN(CC1)C(=O)[C@@H]2[C@H]3CC[C@H](O3)[C@@H]2C(O)=O"                                                                        
LB1 SMILES           CACTVS               3.385 "CN1CCN(CC1)C(=O)[CH]2[CH]3CC[CH](O3)[CH]2C(O)=O"                                                                              
LB1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CN1CCN(CC1)C(=O)[C@@H]2[C@H]3CC[C@@H]([C@@H]2C(=O)O)O3"                                                                       
LB1 SMILES           "OpenEye OEToolkits" 2.0.6 "CN1CCN(CC1)C(=O)C2C3CCC(C2C(=O)O)O3"                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
LB1 "SYSTEMATIC NAME" ACDLabs              12.01 "(1S,2R,3S,4R)-3-(4-methylpiperazine-1-carbonyl)-7-oxabicyclo[2.2.1]heptane-2-carboxylic acid"              
LB1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(1~{S},2~{R},3~{S},4~{R})-3-(4-methylpiperazin-1-yl)carbonyl-7-oxabicyclo[2.2.1]heptane-2-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
LB1 "Create component" 2017-07-17 RCSB 
LB1 "Initial release"  2018-07-18 RCSB 
# 
