data_2M1
# 
_chem_comp.id                                    2M1 
_chem_comp.name                                  "N-[(benzyloxy)carbonyl]-L-leucyl-N-[(3S)-5-methyl-1-(methylsulfonyl)hexan-3-yl]-L-leucinamide" 
_chem_comp.type                                  peptide-like 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C28 H47 N3 O6 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         PHQ-Leu-Leu-Leu-vinylsulfone 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-12-02 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        553.754 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     2M1 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4NO6 
_chem_comp.pdbx_subcomponent_list                "PHQ LEU LEU 2M0" 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
2M1 C7  C7  C 0 1 N N N N N N 11.009 -137.258 21.701 -4.585  -0.142 0.627  C1   PHQ 1  
2M1 O8  O8  O 0 1 N N N N N N 11.440 -138.322 21.253 -4.608  -0.513 1.784  O1   PHQ 2  
2M1 O6  O6  O 0 1 N N N N N N 11.363 -136.860 22.958 -5.714  0.295  0.038  O2   PHQ 3  
2M1 C5  C5  C 0 1 N N N N N N 12.760 -136.688 23.116 -6.921  0.296  0.844  C2   PHQ 4  
2M1 C4  C4  C 0 1 Y N N N N N 12.942 -136.316 24.464 -8.073  0.814  0.023  C3   PHQ 5  
2M1 C32 C32 C 0 1 Y N N N N N 13.515 -135.081 24.790 -8.845  -0.063 -0.716 C4   PHQ 6  
2M1 C33 C33 C 0 1 Y N N N N N 13.692 -134.718 26.126 -9.902  0.412  -1.469 C5   PHQ 7  
2M1 C1  C1  C 0 1 Y N N N N N 13.301 -135.583 27.148 -10.188 1.764  -1.484 C6   PHQ 8  
2M1 C2  C2  C 0 1 Y N N N N N 12.732 -136.816 26.832 -9.417  2.641  -0.744 C7   PHQ 9  
2M1 C3  C3  C 0 1 Y N N N N N 12.555 -137.178 25.496 -8.362  2.166  0.013  C8   PHQ 10 
2M1 N9  N9  N 0 1 N N N N N N 10.175 -136.490 20.968 -3.428  -0.164 -0.064 N    LEU 11 
2M1 C10 C10 C 0 1 N N S N N N 9.715  -136.889 19.622 -2.200  -0.640 0.578  CA   LEU 12 
2M1 C15 C15 C 0 1 N N N N N N 10.793 -136.688 18.561 -1.006  -0.026 -0.106 C    LEU 13 
2M1 O31 O31 O 0 1 N N N N N N 11.530 -135.702 18.572 -1.165  0.734  -1.038 O    LEU 14 
2M1 C11 C11 C 0 1 N N N N N N 8.493  -136.071 19.191 -2.125  -2.164 0.467  CB   LEU 15 
2M1 C12 C12 C 0 1 N N N N N N 7.251  -136.423 20.019 -3.268  -2.791 1.266  CG   LEU 16 
2M1 C13 C13 C 0 1 N N N N N N 6.041  -135.720 19.399 -3.268  -4.306 1.054  CD1  LEU 17 
2M1 C14 C14 C 0 1 N N N N N N 6.980  -137.928 20.055 -3.079  -2.484 2.753  CD2  LEU 18 
2M1 N16 N16 N 0 1 N N N N N N 10.794 -137.655 17.629 0.239   -0.322 0.317  N    LEU 19 
2M1 C17 C17 C 0 1 N N S N N N 11.727 -137.693 16.505 1.400   0.274  -0.348 CA   LEU 20 
2M1 C22 C22 C 0 1 N N N N N N 10.923 -137.732 15.205 2.602   -0.614 -0.153 C    LEU 21 
2M1 O23 O23 O 0 1 N N N N N N 10.025 -138.555 15.051 2.499   -1.644 0.480  O    LEU 22 
2M1 C18 C18 C 0 1 N N N N N N 12.531 -138.996 16.632 1.681   1.652  0.255  CB   LEU 23 
2M1 C19 C19 C 0 1 N N N N N N 14.032 -138.786 16.877 0.512   2.591  -0.052 CG   LEU 24 
2M1 C20 C20 C 0 1 N N N N N N 14.318 -137.678 17.901 0.734   3.929  0.654  CD1  LEU 25 
2M1 C21 C21 C 0 1 N N N N N N 14.601 -140.105 17.411 0.425   2.819  -1.563 CD2  LEU 26 
2M1 C26 C26 C 0 1 N N N N N N 12.891 -137.451 12.025 6.286   0.718  0.548  C26  2M0 27 
2M1 C28 C28 C 0 1 N N N N N N 10.061 -134.311 13.379 3.756   -3.130 -1.376 C28  2M0 28 
2M1 C41 C41 C 0 1 N N N N N N 11.371 -137.744 12.004 6.236   -0.291 -0.602 C41  2M0 29 
2M1 S42 S42 S 0 1 N N N N N N 13.919 -138.967 12.149 7.799   1.710  0.416  S42  2M0 30 
2M1 O43 O43 O 0 1 N N N N N N 13.996 -139.687 10.801 8.919   0.857  0.614  O43  2M0 31 
2M1 O44 O44 O 0 1 N N N N N N 13.318 -139.898 13.196 7.725   2.493  -0.768 O44  2M0 32 
2M1 C45 C45 C 0 1 N N N N N N 15.566 -138.516 12.653 7.651   2.812  1.849  C45  2M0 33 
2M1 C25 C25 C 0 1 N N S N N N 10.619 -136.785 12.957 4.960   -1.127 -0.491 C25  2M0 34 
2M1 C27 C27 C 0 1 N N N N N N 10.608 -135.352 12.381 4.969   -2.217 -1.565 C27  2M0 35 
2M1 C30 C30 C 0 1 N N N N N N 10.129 -132.919 12.734 3.696   -4.142 -2.522 C30  2M0 36 
2M1 C29 C29 C 0 1 N N N N N N 8.611  -134.618 13.776 3.880   -3.873 -0.045 C29  2M0 37 
2M1 N24 N24 N 0 1 N N N N N N 11.273 -136.831 14.280 3.792   -0.264 -0.681 N24  2M0 38 
2M1 H1  H1  H 0 1 N N N N N N 13.290 -137.628 22.901 -7.138  -0.720 1.175  H21  PHQ 39 
2M1 H2  H2  H 0 1 N N N N N N 13.129 -135.898 22.446 -6.777  0.938  1.714  H22  PHQ 40 
2M1 H47 H47 H 0 1 N N N N N N 13.821 -134.406 24.004 -8.622  -1.120 -0.705 H41  PHQ 41 
2M1 H46 H46 H 0 1 N N N N N N 14.134 -133.763 26.370 -10.504 -0.273 -2.047 H51  PHQ 42 
2M1 H45 H45 H 0 1 N N N N N N 13.439 -135.299 28.181 -11.013 2.136  -2.072 H61  PHQ 43 
2M1 H44 H44 H 0 1 N N N N N N 12.429 -137.490 27.620 -9.640  3.698  -0.755 H71  PHQ 44 
2M1 H43 H43 H 0 1 N N N N N N 12.114 -138.134 25.256 -7.762  2.851  0.594  H81  PHQ 45 
2M1 H42 H42 H 0 1 N N N N N N 9.858  -135.622 21.349 -3.409  0.136  -0.986 H    LEU 46 
2M1 H3  H3  H 0 1 N N N N N N 9.434  -137.952 19.637 -2.204  -0.352 1.629  HA   LEU 47 
2M1 H36 H36 H 0 1 N N N N N N 8.716  -135.002 19.321 -2.210  -2.457 -0.580 HB2  LEU 48 
2M1 H37 H37 H 0 1 N N N N N N 8.284  -136.275 18.131 -1.171  -2.510 0.864  HB3  LEU 49 
2M1 H38 H38 H 0 1 N N N N N N 7.390  -136.058 21.047 -4.218  -2.377 0.928  HG   LEU 50 
2M1 H4  H4  H 0 1 N N N N N N 5.139  -135.961 19.980 -2.318  -4.720 1.393  HD11 LEU 51 
2M1 H5  H5  H 0 1 N N N N N N 6.204  -134.632 19.409 -4.083  -4.753 1.624  HD12 LEU 52 
2M1 H6  H6  H 0 1 N N N N N N 5.911  -136.061 18.361 -3.402  -4.525 -0.005 HD13 LEU 53 
2M1 H39 H39 H 0 1 N N N N N N 6.082  -138.125 20.659 -3.894  -2.931 3.323  HD21 LEU 54 
2M1 H40 H40 H 0 1 N N N N N N 6.821  -138.296 19.031 -2.129  -2.898 3.092  HD22 LEU 55 
2M1 H41 H41 H 0 1 N N N N N N 7.843  -138.445 20.501 -3.080  -1.404 2.904  HD23 LEU 56 
2M1 H35 H35 H 0 1 N N N N N N 10.120 -138.389 17.709 0.366   -0.930 1.062  H    LEU 57 
2M1 H7  H7  H 0 1 N N N N N N 12.402 -136.825 16.513 1.195   0.378  -1.413 HA   LEU 58 
2M1 H32 H32 H 0 1 N N N N N N 12.121 -139.574 17.474 1.799   1.559  1.334  HB2  LEU 59 
2M1 H33 H33 H 0 1 N N N N N N 12.410 -139.569 15.701 2.596   2.058  -0.177 HB3  LEU 60 
2M1 H34 H34 H 0 1 N N N N N N 14.524 -138.536 15.925 -0.416  2.142  0.301  HG   LEU 61 
2M1 H8  H8  H 0 1 N N N N N N 15.405 -137.573 18.035 1.663   4.377  0.301  HD11 LEU 62 
2M1 H9  H9  H 0 1 N N N N N N 13.900 -136.727 17.539 -0.098  4.598  0.436  HD12 LEU 63 
2M1 H10 H10 H 0 1 N N N N N N 13.854 -137.939 18.863 0.797   3.766  1.730  HD13 LEU 64 
2M1 H11 H11 H 0 1 N N N N N N 15.679 -139.991 17.598 0.267   1.866  -2.066 HD21 LEU 65 
2M1 H12 H12 H 0 1 N N N N N N 14.092 -140.371 18.349 -0.407  3.488  -1.781 HD22 LEU 66 
2M1 H13 H13 H 0 1 N N N N N N 14.440 -140.901 16.669 1.354   3.267  -1.916 HD23 LEU 67 
2M1 H14 H14 H 0 1 N N N N N N 13.158 -136.923 11.098 5.417   1.373  0.495  H14  2M0 68 
2M1 H15 H15 H 0 1 N N N N N N 13.111 -136.808 12.890 6.283   0.185  1.498  H15  2M0 69 
2M1 H16 H16 H 0 1 N N N N N N 10.689 -134.318 14.282 2.846   -2.530 -1.373 H16  2M0 70 
2M1 H17 H17 H 0 1 N N N N N N 10.991 -137.609 10.981 6.239   0.242  -1.553 H17  2M0 71 
2M1 H18 H18 H 0 1 N N N N N N 11.198 -138.782 12.325 7.106   -0.946 -0.550 H18  2M0 72 
2M1 H19 H19 H 0 1 N N N N N N 15.524 -137.997 13.622 7.607   2.218  2.761  H19  2M0 73 
2M1 H20 H20 H 0 1 N N N N N N 16.181 -139.423 12.749 8.515   3.476  1.888  H20  2M0 74 
2M1 H21 H21 H 0 1 N N N N N N 16.010 -137.850 11.899 6.741   3.405  1.758  H21  2M0 75 
2M1 H22 H22 H 0 1 N N N N N N 9.579  -137.132 13.051 4.913   -1.590 0.495  H22  2M0 76 
2M1 H23 H23 H 0 1 N N N N N N 11.638 -135.074 12.112 5.883   -2.804 -1.479 H23  2M0 77 
2M1 H24 H24 H 0 1 N N N N N N 9.977  -135.340 11.480 4.926   -1.755 -2.551 H24  2M0 78 
2M1 H25 H25 H 0 1 N N N N N N 9.741  -132.169 13.438 2.832   -4.793 -2.387 H25  2M0 79 
2M1 H26 H26 H 0 1 N N N N N N 11.174 -132.681 12.484 3.608   -3.612 -3.470 H26  2M0 80 
2M1 H27 H27 H 0 1 N N N N N N 9.522  -132.910 11.817 4.606   -4.742 -2.524 H27  2M0 81 
2M1 H28 H28 H 0 1 N N N N N N 8.256  -133.857 14.486 3.923   -3.152 0.772  H28  2M0 82 
2M1 H29 H29 H 0 1 N N N N N N 7.975  -134.607 12.879 3.016   -4.524 0.090  H29  2M0 83 
2M1 H30 H30 H 0 1 N N N N N N 8.562  -135.611 14.248 4.790   -4.474 -0.047 H30  2M0 84 
2M1 H31 H31 H 0 1 N N N N N N 11.996 -136.172 14.490 3.874   0.559  -1.186 H31  2M0 85 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
2M1 O43 S42 DOUB N N 1  
2M1 C41 C26 SING N N 2  
2M1 C41 C25 SING N N 3  
2M1 C26 S42 SING N N 4  
2M1 S42 C45 SING N N 5  
2M1 S42 O44 DOUB N N 6  
2M1 C27 C25 SING N N 7  
2M1 C27 C28 SING N N 8  
2M1 C30 C28 SING N N 9  
2M1 C25 N24 SING N N 10 
2M1 C28 C29 SING N N 11 
2M1 N24 C22 SING N N 12 
2M1 O23 C22 DOUB N N 13 
2M1 C22 C17 SING N N 14 
2M1 C17 C18 SING N N 15 
2M1 C17 N16 SING N N 16 
2M1 C18 C19 SING N N 17 
2M1 C19 C21 SING N N 18 
2M1 C19 C20 SING N N 19 
2M1 N16 C15 SING N N 20 
2M1 C15 O31 DOUB N N 21 
2M1 C15 C10 SING N N 22 
2M1 C11 C10 SING N N 23 
2M1 C11 C12 SING N N 24 
2M1 C13 C12 SING N N 25 
2M1 C10 N9  SING N N 26 
2M1 C12 C14 SING N N 27 
2M1 N9  C7  SING N N 28 
2M1 O8  C7  DOUB N N 29 
2M1 C7  O6  SING N N 30 
2M1 O6  C5  SING N N 31 
2M1 C5  C4  SING N N 32 
2M1 C4  C32 DOUB Y N 33 
2M1 C4  C3  SING Y N 34 
2M1 C32 C33 SING Y N 35 
2M1 C3  C2  DOUB Y N 36 
2M1 C33 C1  DOUB Y N 37 
2M1 C2  C1  SING Y N 38 
2M1 C5  H1  SING N N 39 
2M1 C5  H2  SING N N 40 
2M1 C10 H3  SING N N 41 
2M1 C13 H4  SING N N 42 
2M1 C13 H5  SING N N 43 
2M1 C13 H6  SING N N 44 
2M1 C17 H7  SING N N 45 
2M1 C20 H8  SING N N 46 
2M1 C20 H9  SING N N 47 
2M1 C20 H10 SING N N 48 
2M1 C21 H11 SING N N 49 
2M1 C21 H12 SING N N 50 
2M1 C21 H13 SING N N 51 
2M1 C26 H14 SING N N 52 
2M1 C26 H15 SING N N 53 
2M1 C28 H16 SING N N 54 
2M1 C41 H17 SING N N 55 
2M1 C41 H18 SING N N 56 
2M1 C45 H19 SING N N 57 
2M1 C45 H20 SING N N 58 
2M1 C45 H21 SING N N 59 
2M1 C25 H22 SING N N 60 
2M1 C27 H23 SING N N 61 
2M1 C27 H24 SING N N 62 
2M1 C30 H25 SING N N 63 
2M1 C30 H26 SING N N 64 
2M1 C30 H27 SING N N 65 
2M1 C29 H28 SING N N 66 
2M1 C29 H29 SING N N 67 
2M1 C29 H30 SING N N 68 
2M1 N24 H31 SING N N 69 
2M1 C18 H32 SING N N 70 
2M1 C18 H33 SING N N 71 
2M1 C19 H34 SING N N 72 
2M1 N16 H35 SING N N 73 
2M1 C11 H36 SING N N 74 
2M1 C11 H37 SING N N 75 
2M1 C12 H38 SING N N 76 
2M1 C14 H39 SING N N 77 
2M1 C14 H40 SING N N 78 
2M1 C14 H41 SING N N 79 
2M1 N9  H42 SING N N 80 
2M1 C3  H43 SING N N 81 
2M1 C2  H44 SING N N 82 
2M1 C1  H45 SING N N 83 
2M1 C33 H46 SING N N 84 
2M1 C32 H47 SING N N 85 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
2M1 SMILES           ACDLabs              12.01 "O=S(=O)(C)CCC(NC(=O)C(NC(=O)C(NC(=O)OCc1ccccc1)CC(C)C)CC(C)C)CC(C)C"                                                                                                                                               
2M1 InChI            InChI                1.03  "InChI=1S/C28H47N3O6S/c1-19(2)15-23(13-14-38(7,35)36)29-26(32)24(16-20(3)4)30-27(33)25(17-21(5)6)31-28(34)37-18-22-11-9-8-10-12-22/h8-12,19-21,23-25H,13-18H2,1-7H3,(H,29,32)(H,30,33)(H,31,34)/t23-,24+,25+/m1/s1" 
2M1 InChIKey         InChI                1.03  UXVISWMDYFNKOC-DSITVLBTSA-N                                                                                                                                                                                         
2M1 SMILES_CANONICAL CACTVS               3.385 "CC(C)C[C@@H](CC[S](C)(=O)=O)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CC(C)C)NC(=O)OCc1ccccc1"                                                                                                                                
2M1 SMILES           CACTVS               3.385 "CC(C)C[CH](CC[S](C)(=O)=O)NC(=O)[CH](CC(C)C)NC(=O)[CH](CC(C)C)NC(=O)OCc1ccccc1"                                                                                                                                    
2M1 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC(C)C[C@@H](CCS(=O)(=O)C)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CC(C)C)NC(=O)OCc1ccccc1"                                                                                                                                  
2M1 SMILES           "OpenEye OEToolkits" 1.7.6 "CC(C)CC(CCS(=O)(=O)C)NC(=O)C(CC(C)C)NC(=O)C(CC(C)C)NC(=O)OCc1ccccc1"                                                                                                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
2M1 "SYSTEMATIC NAME" ACDLabs              12.01 "N-[(benzyloxy)carbonyl]-L-leucyl-N-[(3S)-5-methyl-1-(methylsulfonyl)hexan-3-yl]-L-leucinamide"                                                                                   
2M1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(phenylmethyl) N-[(2S)-4-methyl-1-[[(2S)-4-methyl-1-[[(3S)-5-methyl-1-methylsulfonyl-hexan-3-yl]amino]-1-oxidanylidene-pentan-2-yl]amino]-1-oxidanylidene-pentan-2-yl]carbamate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
2M1 "Create component" 2013-12-02 RCSB 
2M1 "Initial release"  2014-02-12 RCSB 
2M1 "Modify synonyms"  2021-03-01 PDBE 
2M1 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      2M1 
_pdbx_chem_comp_synonyms.name         PHQ-Leu-Leu-Leu-vinylsulfone 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            2M1 
_pdbx_chem_comp_pcm.modified_residue_id                THR 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C41 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG1 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
