data_VF0
# 
_chem_comp.id                                    VF0 
_chem_comp.name                                  "(2R)-2-azanyl-3-[oxidanyl-[(2R)-2-oxidanyl-3-tetradec-9-enoyloxy-propoxy]phosphoryl]oxy-propanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H38 N O9 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-07-21 
_chem_comp.pdbx_modified_date                    2023-10-20 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        467.491 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VF0 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8K4N 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VF0 C10  C1  C 0 1 N N N 163.036 147.921 138.376 -10.887 -1.232 0.590  C10  VF0 1  
VF0 C13  C2  C 0 1 N N N 165.584 147.891 135.603 -7.122  -1.528 -0.038 C13  VF0 2  
VF0 C15  C3  C 0 1 N N N 165.522 147.462 133.127 -4.643  -1.235 -0.147 C15  VF0 3  
VF0 C17  C4  C 0 1 N N N 163.827 146.758 131.430 -2.164  -0.943 -0.256 C17  VF0 4  
VF0 C21  C5  C 0 1 N N N 166.499 146.536 129.753 1.306   0.495  0.231  C21  VF0 5  
VF0 C22  C6  C 0 1 N N R 168.009 146.748 129.743 2.651   -0.042 -0.262 C22  VF0 6  
VF0 C24  C7  C 0 1 N N N 168.546 146.548 128.333 3.781   0.827  0.296  C24  VF0 7  
VF0 C05  C8  C 0 1 N N N 158.626 146.438 140.354 -15.090 2.787  -0.735 C05  VF0 8  
VF0 C06  C9  C 0 1 N N N 159.547 147.379 139.580 -14.775 1.503  0.036  C06  VF0 9  
VF0 C07  C10 C 0 1 N N N 160.653 147.882 140.504 -13.471 0.900  -0.490 C07  VF0 10 
VF0 C08  C11 C 0 1 N N N 161.370 149.068 139.862 -13.156 -0.384 0.281  C08  VF0 11 
VF0 C09  C12 C 0 1 N N N 162.847 148.747 139.644 -11.872 -0.978 -0.236 C09  VF0 12 
VF0 C11  C13 C 0 1 N N N 164.127 148.550 137.522 -9.601  -1.820 0.072  C11  VF0 13 
VF0 C12  C14 C 0 1 N N N 164.170 147.852 136.168 -8.428  -0.930 0.489  C12  VF0 14 
VF0 C14  C15 C 0 1 N N N 165.739 146.843 134.506 -5.949  -0.638 0.379  C14  VF0 15 
VF0 C16  C16 C 0 1 N N N 164.037 147.478 132.759 -3.470  -0.345 0.270  C16  VF0 16 
VF0 C18  C17 C 0 1 N N N 164.472 147.564 130.303 -1.009  -0.066 0.154  C18  VF0 17 
VF0 C30  C18 C 0 1 N N N 169.155 149.424 125.078 9.021   0.196  0.208  C30  VF0 18 
VF0 C31  C19 C 0 1 N N R 167.810 149.540 124.368 9.894   -0.914 -0.382 C31  VF0 19 
VF0 C33  C20 C 0 1 N N N 166.734 148.841 125.192 11.322  -0.717 0.058  C33  VF0 20 
VF0 N32  N1  N 0 1 N N N 167.888 148.918 123.061 9.822   -0.865 -1.849 N32  VF0 21 
VF0 O19  O1  O 0 1 N N N 163.793 148.094 129.492 -1.210  0.934  0.801  O19  VF0 22 
VF0 O20  O2  O 0 1 N N N 165.863 147.685 130.226 0.243   -0.396 -0.199 O20  VF0 23 
VF0 O23  O3  O 0 1 N N N 168.622 145.824 130.593 2.684   -0.007 -1.690 O23  VF0 24 
VF0 O25  O4  O 0 1 N N N 169.830 147.088 128.247 5.042   0.259  -0.068 O25  VF0 25 
VF0 O27  O5  O 0 1 N N N 170.785 146.991 125.866 6.497   1.087  1.821  O27  VF0 26 
VF0 O28  O6  O 0 1 N N N 171.402 148.760 127.118 6.612   2.347  -0.363 O28  VF0 27 
VF0 O29  O7  O 0 1 N N N 168.986 148.768 126.298 7.651   -0.055 -0.111 O29  VF0 28 
VF0 O34  O8  O 0 1 N N N 166.600 147.592 125.122 12.120  -0.205 -0.692 O34  VF0 29 
VF0 O35  O9  O 0 1 N N N 165.982 149.517 125.940 11.708  -1.111 1.281  O35  VF0 30 
VF0 P26  P1  P 0 1 N N N 170.253 147.898 126.878 6.451   0.913  0.352  P26  VF0 31 
VF0 H101 H1  H 0 0 N N N 162.482 147.029 138.124 -10.997 -1.015 1.643  H101 VF0 32 
VF0 H132 H3  H 0 0 N N N 166.304 147.684 136.409 -6.986  -2.526 0.378  H132 VF0 33 
VF0 H131 H4  H 0 0 N N N 165.781 148.889 135.184 -7.162  -1.589 -1.125 H131 VF0 34 
VF0 H152 H5  H 0 0 N N N 166.072 146.873 132.378 -4.507  -2.234 0.269  H152 VF0 35 
VF0 H151 H6  H 0 0 N N N 165.902 148.494 133.133 -4.684  -1.297 -1.235 H151 VF0 36 
VF0 H171 H7  H 0 0 N N N 162.749 146.655 131.236 -2.028  -1.941 0.159  H171 VF0 37 
VF0 H172 H8  H 0 0 N N N 164.288 145.760 131.477 -2.205  -1.004 -1.344 H172 VF0 38 
VF0 H212 H9  H 0 0 N N N 166.154 146.322 128.731 1.314   0.552  1.320  H212 VF0 39 
VF0 H211 H10 H 0 0 N N N 166.254 145.687 130.408 1.137   1.489  -0.183 H211 VF0 40 
VF0 H221 H11 H 0 0 N N N 168.227 147.777 130.065 2.780   -1.069 0.080  H221 VF0 41 
VF0 H241 H12 H 0 0 N N N 167.886 147.054 127.613 3.704   1.833  -0.117 H241 VF0 42 
VF0 H242 H13 H 0 0 N N N 168.583 145.473 128.103 3.703   0.872  1.382  H242 VF0 43 
VF0 H051 H14 H 0 0 N N N 157.829 146.075 139.689 -14.278 3.501  -0.599 H051 VF0 44 
VF0 H052 H15 H 0 0 N N N 159.207 145.583 140.730 -15.197 2.557  -1.795 H052 VF0 45 
VF0 H1   H16 H 0 1 N N N 158.179 146.978 141.202 -16.019 3.217  -0.361 H1   VF0 46 
VF0 H062 H17 H 0 0 N N N 159.994 146.839 138.732 -14.668 1.733  1.096  H062 VF0 47 
VF0 H061 H18 H 0 0 N N N 158.966 148.234 139.204 -15.587 0.789  -0.101 H061 VF0 48 
VF0 H071 H19 H 0 0 N N N 160.213 148.197 141.461 -13.578 0.670  -1.550 H071 VF0 49 
VF0 H072 H20 H 0 0 N N N 161.376 147.072 140.682 -12.659 1.614  -0.353 H072 VF0 50 
VF0 H081 H21 H 0 0 N N N 161.284 149.944 140.522 -13.049 -0.154 1.341  H081 VF0 51 
VF0 H082 H22 H 0 0 N N N 160.902 149.292 138.892 -13.968 -1.098 0.145  H082 VF0 52 
VF0 H091 H24 H 0 0 N N N 163.647 149.061 140.298 -11.762 -1.195 -1.289 H091 VF0 53 
VF0 H112 H25 H 0 0 N N N 165.099 148.437 138.025 -9.465  -2.819 0.487  H112 VF0 54 
VF0 H111 H26 H 0 0 N N N 163.911 149.619 137.378 -9.641  -1.882 -1.016 H111 VF0 55 
VF0 H122 H27 H 0 0 N N N 163.487 148.363 135.474 -8.387  -0.869 1.576  H122 VF0 56 
VF0 H121 H28 H 0 0 N N N 163.855 146.805 136.288 -8.564  0.068  0.073  H121 VF0 57 
VF0 H141 H29 H 0 0 N N N 164.999 146.045 134.663 -6.085  0.361  -0.036 H141 VF0 58 
VF0 H142 H30 H 0 0 N N N 166.752 146.418 134.555 -5.909  -0.576 1.467  H142 VF0 59 
VF0 H161 H31 H 0 0 N N N 163.694 148.519 132.669 -3.607  0.653  -0.146 H161 VF0 60 
VF0 H162 H32 H 0 0 N N N 163.460 146.969 133.545 -3.430  -0.283 1.357  H162 VF0 61 
VF0 H301 H33 H 0 0 N N N 169.853 148.852 124.449 9.144   0.217  1.291  H301 VF0 62 
VF0 H302 H34 H 0 0 N N N 169.562 150.430 125.257 9.322   1.156  -0.210 H302 VF0 63 
VF0 H311 H35 H 0 0 N N N 167.549 150.604 124.265 9.536   -1.882 -0.032 H311 VF0 64 
VF0 H2   H36 H 0 1 N N N 167.004 148.997 122.600 8.886   -1.059 -2.171 H2   VF0 65 
VF0 H321 H37 H 0 0 N N N 168.590 149.376 122.515 10.149  0.023  -2.197 H321 VF0 66 
VF0 H231 H39 H 0 0 N N N 168.294 145.940 131.477 2.575   0.878  -2.064 H231 VF0 67 
VF0 H3   H40 H 0 1 N N N 172.125 148.485 126.566 6.592   2.309  -1.329 H3   VF0 68 
VF0 H4   H41 H 0 1 N N N 165.370 148.939 126.381 12.634  -0.964 1.518  H4   VF0 69 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VF0 N32 C31  SING N N 1  
VF0 C31 C30  SING N N 2  
VF0 C31 C33  SING N N 3  
VF0 C30 O29  SING N N 4  
VF0 O34 C33  DOUB N N 5  
VF0 C33 O35  SING N N 6  
VF0 O27 P26  DOUB N N 7  
VF0 O29 P26  SING N N 8  
VF0 P26 O28  SING N N 9  
VF0 P26 O25  SING N N 10 
VF0 O25 C24  SING N N 11 
VF0 C24 C22  SING N N 12 
VF0 O19 C18  DOUB N N 13 
VF0 C22 C21  SING N N 14 
VF0 C22 O23  SING N N 15 
VF0 C21 O20  SING N N 16 
VF0 O20 C18  SING N N 17 
VF0 C18 C17  SING N N 18 
VF0 C17 C16  SING N N 19 
VF0 C16 C15  SING N N 20 
VF0 C15 C14  SING N N 21 
VF0 C14 C13  SING N N 22 
VF0 C13 C12  SING N N 23 
VF0 C12 C11  SING N N 24 
VF0 C11 C10  SING N N 25 
VF0 C10 C09  DOUB N Z 26 
VF0 C06 C05  SING N N 27 
VF0 C06 C07  SING N N 28 
VF0 C09 C08  SING N N 29 
VF0 C08 C07  SING N N 30 
VF0 C10 H101 SING N N 31 
VF0 C13 H132 SING N N 32 
VF0 C13 H131 SING N N 33 
VF0 C15 H152 SING N N 34 
VF0 C15 H151 SING N N 35 
VF0 C17 H171 SING N N 36 
VF0 C17 H172 SING N N 37 
VF0 C21 H212 SING N N 38 
VF0 C21 H211 SING N N 39 
VF0 C22 H221 SING N N 40 
VF0 C24 H241 SING N N 41 
VF0 C24 H242 SING N N 42 
VF0 C05 H051 SING N N 43 
VF0 C05 H052 SING N N 44 
VF0 C05 H1   SING N N 45 
VF0 C06 H062 SING N N 46 
VF0 C06 H061 SING N N 47 
VF0 C07 H071 SING N N 48 
VF0 C07 H072 SING N N 49 
VF0 C08 H081 SING N N 50 
VF0 C08 H082 SING N N 51 
VF0 C09 H091 SING N N 52 
VF0 C11 H112 SING N N 53 
VF0 C11 H111 SING N N 54 
VF0 C12 H122 SING N N 55 
VF0 C12 H121 SING N N 56 
VF0 C14 H141 SING N N 57 
VF0 C14 H142 SING N N 58 
VF0 C16 H161 SING N N 59 
VF0 C16 H162 SING N N 60 
VF0 C30 H301 SING N N 61 
VF0 C30 H302 SING N N 62 
VF0 C31 H311 SING N N 63 
VF0 N32 H2   SING N N 64 
VF0 N32 H321 SING N N 65 
VF0 O23 H231 SING N N 66 
VF0 O28 H3   SING N N 67 
VF0 O35 H4   SING N N 68 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VF0 InChI            InChI                1.06  "InChI=1S/C20H38NO9P/c1-2-3-4-5-6-7-8-9-10-11-12-13-19(23)28-14-17(22)15-29-31(26,27)30-16-18(21)20(24)25/h5-6,17-18,22H,2-4,7-16,21H2,1H3,(H,24,25)(H,26,27)/t17-,18-/m1/s1" 
VF0 InChIKey         InChI                1.06  NPKANCOBLRPFQN-QZTJIDSGSA-N                                                                                                                                                   
VF0 SMILES_CANONICAL CACTVS               3.385 "CCCC\C=C/CCCCCCCC(=O)OC[C@@H](O)CO[P](O)(=O)OC[C@@H](N)C(O)=O"                                                                                                               
VF0 SMILES           CACTVS               3.385 "CCCCC=CCCCCCCCC(=O)OC[CH](O)CO[P](O)(=O)OC[CH](N)C(O)=O"                                                                                                                     
VF0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCC=CCCCCCCCC(=O)OC[C@H](COP(=O)(O)OC[C@H](C(=O)O)N)O"                                                                                                                     
VF0 SMILES           "OpenEye OEToolkits" 2.0.7 "CCCCC=CCCCCCCCC(=O)OCC(COP(=O)(O)OCC(C(=O)O)N)O"                                                                                                                             
# 
_pdbx_chem_comp_identifier.comp_id           VF0 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{R})-2-azanyl-3-[oxidanyl-[(2~{R})-2-oxidanyl-3-tetradec-9-enoyloxy-propoxy]phosphoryl]oxy-propanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VF0 "Create component" 2023-07-21 PDBJ 
VF0 "Initial release"  2023-10-25 RCSB 
# 
