data_UP0
# 
_chem_comp.id                                    UP0 
_chem_comp.name                                  "(1~{Z},3~{R},4~{S},7~{S},8~{Z})-8-ethylidene-4,7-bis(oxidanyl)-5-oxidanylidene-3-propyl-cyclononene-1,2-dicarboxylic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C16 H22 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-02-08 
_chem_comp.pdbx_modified_date                    2023-03-17 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        326.342 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     UP0 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8CI0 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
UP0 C1  C1  C 0 1 N N N 75.484 99.681  85.125 4.503  -0.979 -1.828 C1  UP0 1  
UP0 C2  C2  C 0 1 N N N 76.250 100.508 86.205 3.019  -0.666 -1.630 C2  UP0 2  
UP0 C4  C3  C 0 1 N N R 76.638 102.506 84.620 1.039  -1.021 -0.147 C4  UP0 3  
UP0 O8  O1  O 0 1 N N N 74.599 103.773 84.100 0.309  -3.162 0.735  O8  UP0 4  
UP0 C9  C4  C 0 1 N N N 76.489 104.206 82.771 -0.799 -1.163 1.470  C9  UP0 5  
UP0 C11 C5  C 0 1 N N N 76.056 103.430 81.571 -2.102 -1.686 0.942  C11 UP0 6  
UP0 C15 C6  C 0 1 N N N 78.410 102.514 80.972 -2.154 -0.107 -1.011 C15 UP0 7  
UP0 C16 C7  C 0 1 N N N 79.598 102.683 80.388 -3.168 0.700  -0.825 C16 UP0 8  
UP0 C17 C8  C 0 1 N N N 79.927 103.624 79.240 -4.425 0.191  -0.168 C17 UP0 9  
UP0 C19 C9  C 0 1 N N N 78.890 102.099 83.460 -0.067 1.114  -0.641 C19 UP0 10 
UP0 C21 C10 C 0 1 N N N 78.929 103.072 85.701 1.682  1.182  1.082  C21 UP0 11 
UP0 C24 C11 C 0 1 N N N 80.377 102.127 83.538 -0.282 2.558  -0.427 C24 UP0 12 
UP0 C3  C12 C 0 1 N N N 76.117 102.045 86.025 2.524  -1.334 -0.345 C3  UP0 13 
UP0 C6  C13 C 0 1 N N S 76.033 103.855 84.175 0.511  -1.789 1.074  C6  UP0 14 
UP0 O10 O2  O 0 1 N N N 77.189 105.160 82.601 -0.801 -0.221 2.226  O10 UP0 15 
UP0 C12 C14 C 0 1 N N S 77.122 103.206 80.498 -2.229 -1.554 -0.575 C12 UP0 16 
UP0 O14 O3  O 0 1 N N N 76.369 102.411 79.587 -1.171 -2.285 -1.199 O14 UP0 17 
UP0 C18 C15 C 0 1 N N N 78.323 101.511 82.156 -0.890 0.387  -1.667 C18 UP0 18 
UP0 C20 C16 C 0 1 N N N 78.192 102.512 84.549 0.861  0.466  0.087  C20 UP0 19 
UP0 O22 O4  O 0 1 N N N 79.006 104.264 85.738 2.799  1.560  0.789  O22 UP0 20 
UP0 O23 O5  O 0 1 N N N 79.498 102.310 86.607 1.193  1.417  2.315  O23 UP0 21 
UP0 O25 O6  O 0 1 N N N 81.014 103.084 83.951 -1.121 3.241  -1.230 O25 UP0 22 
UP0 O26 O7  O 0 1 N N N 81.018 101.003 83.144 0.299  3.132  0.473  O26 UP0 23 
UP0 H1  H1  H 0 1 N N N 75.624 98.607  85.317 5.071  -0.600 -0.978 H1  UP0 24 
UP0 H2  H2  H 0 1 N N N 74.412 99.924  85.169 4.640  -2.058 -1.904 H2  UP0 25 
UP0 H3  H3  H 0 1 N N N 75.876 99.929  84.127 4.856  -0.503 -2.743 H3  UP0 26 
UP0 H4  H4  H 0 1 N N N 75.853 100.239 87.195 2.882  0.413  -1.554 H4  UP0 27 
UP0 H5  H5  H 0 1 N N N 77.316 100.243 86.153 2.451  -1.045 -2.479 H5  UP0 28 
UP0 H6  H6  H 0 1 N N N 76.294 101.751 83.897 0.482  -1.321 -1.035 H6  UP0 29 
UP0 H7  H7  H 0 1 N N N 74.249 103.554 84.955 -0.052 -3.696 1.455  H7  UP0 30 
UP0 H8  H8  H 0 1 N N N 75.218 103.970 81.106 -2.192 -2.739 1.210  H8  UP0 31 
UP0 H9  H9  H 0 1 N N N 75.711 102.443 81.914 -2.917 -1.135 1.411  H9  UP0 32 
UP0 H10 H10 H 0 1 N N N 80.413 102.088 80.772 -3.104 1.731  -1.142 H10 UP0 33 
UP0 H11 H11 H 0 1 N N N 80.993 103.533 78.984 -5.153 1.000  -0.099 H11 UP0 34 
UP0 H12 H12 H 0 1 N N N 79.316 103.361 78.364 -4.842 -0.623 -0.762 H12 UP0 35 
UP0 H13 H13 H 0 1 N N N 79.710 104.659 79.541 -4.191 -0.173 0.833  H13 UP0 36 
UP0 H14 H14 H 0 1 N N N 76.704 102.549 86.807 2.661  -2.413 -0.421 H14 UP0 37 
UP0 H15 H15 H 0 1 N N N 75.058 102.326 86.123 3.092  -0.955 0.504  H15 UP0 38 
UP0 H16 H16 H 0 1 N N N 76.345 104.644 84.875 1.222  -1.711 1.896  H16 UP0 39 
UP0 H17 H17 H 0 1 N N N 77.382 104.173 80.042 -3.185 -1.972 -0.889 H17 UP0 40 
UP0 H18 H18 H 0 1 N N N 75.587 102.883 79.326 -1.152 -3.224 -0.967 H18 UP0 41 
UP0 H19 H19 H 0 1 N N N 77.268 101.244 82.317 -0.325 -0.459 -2.058 H19 UP0 42 
UP0 H20 H20 H 0 1 N N N 78.894 100.607 81.897 -1.141 1.066  -2.482 H20 UP0 43 
UP0 H21 H21 H 0 1 N N N 79.945 102.855 87.244 1.768  1.889  2.933  H21 UP0 44 
UP0 H22 H22 H 0 1 N N N 81.942 102.879 83.932 -1.229 4.185  -1.051 H22 UP0 45 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
UP0 C17 C16 SING N N 1  
UP0 O14 C12 SING N N 2  
UP0 C16 C15 DOUB N Z 3  
UP0 C12 C15 SING N N 4  
UP0 C12 C11 SING N N 5  
UP0 C15 C18 SING N N 6  
UP0 C11 C9  SING N N 7  
UP0 C18 C19 SING N N 8  
UP0 O10 C9  DOUB N N 9  
UP0 C9  C6  SING N N 10 
UP0 O26 C24 DOUB N N 11 
UP0 C19 C24 SING N N 12 
UP0 C19 C20 DOUB N Z 13 
UP0 C24 O25 SING N N 14 
UP0 O8  C6  SING N N 15 
UP0 C6  C4  SING N N 16 
UP0 C20 C4  SING N N 17 
UP0 C20 C21 SING N N 18 
UP0 C4  C3  SING N N 19 
UP0 C1  C2  SING N N 20 
UP0 C21 O22 DOUB N N 21 
UP0 C21 O23 SING N N 22 
UP0 C3  C2  SING N N 23 
UP0 C1  H1  SING N N 24 
UP0 C1  H2  SING N N 25 
UP0 C1  H3  SING N N 26 
UP0 C2  H4  SING N N 27 
UP0 C2  H5  SING N N 28 
UP0 C4  H6  SING N N 29 
UP0 O8  H7  SING N N 30 
UP0 C11 H8  SING N N 31 
UP0 C11 H9  SING N N 32 
UP0 C16 H10 SING N N 33 
UP0 C17 H11 SING N N 34 
UP0 C17 H12 SING N N 35 
UP0 C17 H13 SING N N 36 
UP0 C3  H14 SING N N 37 
UP0 C3  H15 SING N N 38 
UP0 C6  H16 SING N N 39 
UP0 C12 H17 SING N N 40 
UP0 O14 H18 SING N N 41 
UP0 C18 H19 SING N N 42 
UP0 C18 H20 SING N N 43 
UP0 O23 H21 SING N N 44 
UP0 O25 H22 SING N N 45 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
UP0 InChI            InChI                1.06  "InChI=1S/C16H22O7/c1-3-5-9-13(16(22)23)10(15(20)21)6-8(4-2)11(17)7-12(18)14(9)19/h4,9,11,14,17,19H,3,5-7H2,1-2H3,(H,20,21)(H,22,23)/b8-4-,13-10-/t9-,11+,14+/m1/s1" 
UP0 InChIKey         InChI                1.06  YFQGJJCDYCWLSI-KRKAZGBPSA-N                                                                                                                                          
UP0 SMILES_CANONICAL CACTVS               3.385 "CCC[C@H]/1[C@H](O)C(=O)C[C@H](O)\C(CC(=C/1C(O)=O)/C(O)=O)=C/C"                                                                                                      
UP0 SMILES           CACTVS               3.385 "CCC[CH]1[CH](O)C(=O)C[CH](O)C(CC(=C1C(O)=O)C(O)=O)=CC"                                                                                                              
UP0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC[C@H]/1[C@@H](C(=O)C[C@@H](/C(=C\C)/C/C(=C1/C(=O)O)/C(=O)O)O)O"                                                                                                  
UP0 SMILES           "OpenEye OEToolkits" 2.0.7 "CCCC1C(C(=O)CC(C(=CC)CC(=C1C(=O)O)C(=O)O)O)O"                                                                                                                       
# 
_pdbx_chem_comp_identifier.comp_id           UP0 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(1~{Z},3~{R},4~{S},7~{S},8~{Z})-8-ethylidene-4,7-bis(oxidanyl)-5-oxidanylidene-3-propyl-cyclononene-1,2-dicarboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
UP0 "Create component" 2023-02-08 PDBE 
UP0 "Initial release"  2023-03-22 RCSB 
# 
